mRNA_P-wetherbeei_contig9535.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9535.1.1
Unique NamemRNA_P-wetherbeei_contig9535.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A844ZEI8_9SPHN (DUF4019 domain-containing protein n=1 Tax=Parapontixanthobacter aurantiacus TaxID=1463599 RepID=A0A844ZEI8_9SPHN)

HSP 1 Score: 77.0 bits (188), Expect = 1.960e-14
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   88 AARKWLTEIDRGQVEKAWAETSQLFQK--TAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFARE-SYTETAILCQEGN-WKIVGYFMR 393
            +AR WL  +D G  E++W E    F++  TA + A Q+   R+  G  + R   ++++ +SLPG PAG+Y V++F+T FA +    ET ++  EG  W +VGYF+R
Sbjct:  154 SARDWLALVDAGNWEESWQEAGAFFRQSVTAAEWAAQVRPVREPIGAVQSRELANQQIAESLPGAPAGTYLVLQFDTDFANKPDSVETVVMADEGGEWGVVGYFVR 259          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: UPI001CA4F43D (helix-turn-helix transcriptional regulator n=1 Tax=Sphingomonas sp. RHCKR7 TaxID=2862497 RepID=UPI001CA4F43D)

HSP 1 Score: 72.8 bits (177), Expect = 7.530e-13
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   76 EASEAARKWLTEIDRGQVEKAWAETSQLFQK--TAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFA-RESYTETAILCQE-GNWKIVGYFMR 393
            EAS AAR+W+  +D GQ + +W   +++F++  T+     +    R   G    R  +S   T +LPG+PAG Y V++F+TRFA +    ET +L +E G+W++ GYF+R
Sbjct:  150 EASSAARRWVEMLDAGQWDASWQAAAEVFKRSITSTQWQAKSQSVRTPLGHVSLRVLQSAVKTTTLPGVPAGDYEVLQFQTRFATKPDGLETVVLSKEDGSWRVSGYFIR 259          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A290T9M0_9GAMM (Uncharacterized protein n=4 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A290T9M0_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-10
Identity = 34/107 (31.78%), Postives = 57/107 (53.27%), Query Frame = 1
Query:   85 EAARKWLTEIDRGQVEKAWAETSQLFQKTAPDGARQLGLSRDETGLPR--DRTEKSKRVTQSLPGLPAGSYTVVEFETRFA--RESYTETAILCQEGNWKIVGYFMR 393
            ++A  WL  ID G  + +W +TS  F+    +   QL L +  T L +   R+        SLPG+P G+Y V++F T++   RES    ++   +G W+ +GYF++
Sbjct:   24 QSANNWLELIDSGDYQASWQDTSDRFKNQVSEAQWQLALEQVRTPLGKVVKRSPLDSTRHTSLPGMPDGTYQVMQFSTQYENKRESIETLSMTLIDGKWQAIGYFIK 130          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A511URU6_9GAMM (Uncharacterized protein n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511URU6_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-10
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 1
Query:    7 RFLIVFMLLNGCTAPPHDDFDAIEASEAARKWLTEIDRGQVEKAWAETSQLFQK--TAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFARE-SYTETAILCQEGN-WKIVGYFMR 393
            +F+I  +LL    +P         A  A   WL  ID GQ E+AW  +S L Q   +A   AR +GL+R + G+   R         S+PG P G Y    F+TRF  +   TET     +G+ WK+ GY+++
Sbjct:    6 KFVITTLLL--VLSPVAHSTTQAAAEAAVLAWLENIDSGQYEQAWENSSTLLQVPLSASMLARTVGLARRDFGVVESRRRTRVVRETSMPGAPFGDYMEFTFQTRFENKPQITETITPHLDGDTWKVSGYYVQ 136          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A2G6FAV5_9DELT (Uncharacterized protein n=1 Tax=Desulfobulbus propionicus TaxID=894 RepID=A0A2G6FAV5_9DELT)

HSP 1 Score: 64.3 bits (155), Expect = 3.500e-10
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   91 ARKWLTEIDRGQVEKAWAETSQLFQKTAPDGARQLGLS--RDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFA-RESYTETAILCQE--GNWKIVGYFMR 393
            A+ WL  ID G+  K+W   S +F+        +  LS  R   G    R    ++   SLPG+P GSY V++F T+F  +E+  ET  + +E  G WK  GYF++
Sbjct:   72 AKNWLAIIDNGEYAKSWDGASNIFKNALTSDMWEESLSAIRKPLGQLISRKMLKQQYHSSLPGVPPGSYFVIQFSTKFENKENVVETITMAKEKDGTWKSAGYFIK 177          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A2E4PD43_FLASP (LuxR family transcriptional regulator n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A2E4PD43_FLASP)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-9
Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 1
Query:   16 IVFMLLNGCTAPPHDDFDAIEASEA------------ARKWLTEIDRGQVEKAWAETSQLF--QKTAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFA-RESYTETAILCQE-GNWKIVGYFMR 393
            + F+ +NG   P      A +AS              A+KWL  +D+    ++W E   +F  Q +A   A  +   R   G    R+        SLPG+PAG Y V+EF+T FA +    ET IL +E   WK+ GYF+R
Sbjct:  119 VAFLSVNGVEEPRASSALASQASAXXXXXXXXXXXXQAQKWLMLVDQQNWSESWREAGTIFRSQISADGWASAIVPVRKPLGAVISRSLAKATKATSLPGVPAGEYEVLEFQTNFAAKRGAIETVILAKEQAGWKVDGYFIR 260          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: UPI001BAF23A6 (helix-turn-helix transcriptional regulator n=1 Tax=Sphingopyxis granuli TaxID=267128 RepID=UPI001BAF23A6)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-9
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   28 LLNGCTAPPHDDFDAIEASEAARKWLTEIDRGQVEKAWAETSQLF--QKTAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFA-RESYTETAILCQE-GNWKIVGYFMR 393
            L +  +AP      A  A++A R WLT ID+    ++W +   +F  Q +A   A  +   R   G    R+      T SLPG+PAG Y V+EF+T FA +    ET ++ +E   W++ GYF+R
Sbjct:  136 LASQTSAPSSAPATAASANQA-RNWLTLIDQQNWSESWGKAGTIFRSQISADGWASAIVPVRKPLGTVISRSLAKVTKTTSLPGVPAGEYEVLEFQTNFAAKRGAIETVVMVKEQAGWRVDGYFIR 260          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A2D6T4D6_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T4D6_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 3.440e-9
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 1
Query:   88 AARKWLTEIDRGQVEKAWAETSQLFQKTA--PDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFARESYT-ETAILCQE--GNWKIVGYFMR 393
            AA++WL  IDRG   + W   +   Q      D  + L   R   G    R  +S +   SLPG+P GSY V++++T FA++    ET    +E  G W++ GY++R
Sbjct:   31 AAKQWLALIDRGNYGEGWERAATYLQGIVMKDDLIKALKAVRTPLGAVISRRLRSAQTATSLPGMPDGSYVVIQYDTVFAKKKKAVETITPMRESGGAWRVAGYYIR 137          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: A0A4R1TXX6_9SPHN (Regulatory LuxR family protein n=1 Tax=Sphingomonas sp. PP-CC-3G-468 TaxID=2135656 RepID=A0A4R1TXX6_9SPHN)

HSP 1 Score: 61.6 bits (148), Expect = 1.000e-8
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   76 EASEAARKWLTEIDRGQVEKAWAETSQLF--QKTAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFA-RESYTETAILCQEGN-WKIVGYFMR 393
            +AS AARKW   +D G+ + +W   +  F  Q T       +   R   G    RT +S   +++LPG+ AG Y V++F+T FA +    ET +L +E   W++ GYF+R
Sbjct:  150 DASIAARKWAGLLDDGKWDASWQSAATTFRAQLTLAQWTTTIRSVRQPLGGAASRTLQSAAQSKTLPGVLAGDYQVLQFQTSFATKPDAIETVVLSREQKGWRVSGYFIR 259          
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Match: UPI0018CC5398 (DUF4019 domain-containing protein n=1 Tax=Herbaspirillum sp. RV1423 TaxID=1443993 RepID=UPI0018CC5398)

HSP 1 Score: 52.0 bits (123), Expect = 1.220e-5
Identity = 35/102 (34.31%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   91 ARKWLTEIDRGQVEKAWAETSQLFQK--TAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVVEFETRFARESYT--ETAILCQEGNWKIVGY 384
            A +WL+  D  Q ++ W  +  + QK  +  D A+ LG  R E G  + R         + PGLPAG Y  V F +RFAR + T  + ++    G W  VGY
Sbjct:   38 ASQWLSLSDVNQSDRMWDGSGPIMQKNISKQDWAKYLGNLRGELGPLQGREWAQVARVVNPPGLPAGEYMNVMFNSRFARAATTVEKISLTLAGGKWVPVGY 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9535.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A844ZEI8_9SPHN1.960e-1437.74DUF4019 domain-containing protein n=1 Tax=Parapont... [more]
UPI001CA4F43D7.530e-1337.27helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A290T9M0_9GAMM1.370e-1031.78Uncharacterized protein n=4 Tax=Pseudoalteromonas ... [more]
A0A511URU6_9GAMM2.200e-1033.83Uncharacterized protein n=1 Tax=Halovibrio variabi... [more]
A0A2G6FAV5_9DELT3.500e-1034.91Uncharacterized protein n=1 Tax=Desulfobulbus prop... [more]
A0A2E4PD43_FLASP1.040e-932.39LuxR family transcriptional regulator n=1 Tax=Flav... [more]
UPI001BAF23A61.040e-934.13helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A2D6T4D6_9PROT3.440e-933.64Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A4R1TXX6_9SPHN1.000e-834.55Regulatory LuxR family protein n=1 Tax=Sphingomona... [more]
UPI0018CC53981.220e-534.31DUF4019 domain-containing protein n=1 Tax=Herbaspi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9535contigP-wetherbeei_contig9535:1475..1867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1296990.H845_3285
PFAMsDUF4019,GerE
Model size393
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.25e-15
EggNOG OGsCOG2771@1|root,COG2771@2|Bacteria,1NAK1@1224|Proteobacteria,2U7AK@28211|Alphaproteobacteria
DescriptionProtein of unknown function (DUF4019)
Cds size393
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187097.8408458-CDS-P-wetherbeei_contig9535:1474..18671683187097.8408458-CDS-P-wetherbeei_contig9535:1474..1867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9535 1475..1867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9535.1.1prot_P-wetherbeei_contig9535.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9535 1475..1867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9535.1.1

>prot_P-wetherbeei_contig9535.1.1 ID=prot_P-wetherbeei_contig9535.1.1|Name=mRNA_P-wetherbeei_contig9535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MKRFLIVFMLLNGCTAPPHDDFDAIEASEAARKWLTEIDRGQVEKAWAET
SQLFQKTAPDGARQLGLSRDETGLPRDRTEKSKRVTQSLPGLPAGSYTVV
EFETRFARESYTETAILCQEGNWKIVGYFMR
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mRNA from alignment at P-wetherbeei_contig9535:1475..1867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9535.1.1 ID=mRNA_P-wetherbeei_contig9535.1.1|Name=mRNA_P-wetherbeei_contig9535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig9535:1475..1867+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGATTTTTGATCGTTTTTATGCTACTCAATGGATGCACAGCTCC TCCTCACGATGATTTTGATGCTATTGAAGCTTCCGAAGCCGCACGGAAGT GGTTGACGGAAATCGACCGCGGCCAGGTCGAGAAGGCCTGGGCAGAGACC TCACAACTCTTTCAGAAGACGGCCCCAGATGGAGCCCGCCAGCTCGGGCT AAGTCGCGATGAAACGGGCCTGCCGCGAGACCGCACAGAAAAGAGCAAGC GCGTGACGCAAAGCCTGCCAGGGCTGCCAGCCGGCTCTTACACCGTGGTC GAATTCGAGACTCGTTTTGCCCGAGAGAGCTACACCGAGACGGCAATCCT TTGCCAGGAGGGCAATTGGAAAATTGTGGGCTACTTTATGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9535:1475..1867+

>mRNA_P-wetherbeei_contig9535.1.1 ID=mRNA_P-wetherbeei_contig9535.1.1|Name=mRNA_P-wetherbeei_contig9535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig9535:1475..1867+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGATTTTTGATCGTTTTTATGCTACTCAATGGATGCACAGCTCC
TCCTCACGATGATTTTGATGCTATTGAAGCTTCCGAAGCCGCACGGAAGT
GGTTGACGGAAATCGACCGCGGCCAGGTCGAGAAGGCCTGGGCAGAGACC
TCACAACTCTTTCAGAAGACGGCCCCAGATGGAGCCCGCCAGCTCGGGCT
AAGTCGCGATGAAACGGGCCTGCCGCGAGACCGCACAGAAAAGAGCAAGC
GCGTGACGCAAAGCCTGCCAGGGCTGCCAGCCGGCTCTTACACCGTGGTC
GAATTCGAGACTCGTTTTGCCCGAGAGAGCTACACCGAGACGGCAATCCT
TTGCCAGGAGGGCAATTGGAAAATTGTGGGCTACTTTATGCGG
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