mRNA_P-wetherbeei_contig9529.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9529.1.1
Unique NamemRNA_P-wetherbeei_contig9529.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: D8LFM8_ECTSI (Pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM8_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 2.970e-112
Identity = 173/289 (59.86%), Postives = 213/289 (73.70%), Query Frame = 1
Query:    1 QVQLVVNDELSVGPEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDRLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVPVGMVAGTGTRPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERPAWI 867
            +V+ +++ ELS+  E I L++LYEDD IIAVSK AGMVVHPAPG+WNGTFVNAL+ HL++  + G G                N  LR G+VHRLDKGTTGVLLAAK+ +MQAKL+ LFA+RR+ KSY+ VCVGN G         A IDVPIGRHP  RQ+M AVP  +     +R A SVV T AFDG+LSVAEV+IETGRTHQIRVH+QHRRTPV GD++YGN DWNRR+ Q  GL RPLLHA S+ F+HP+TG ++S+ APLP+D+ AVVR IYP+V+ E P W+
Sbjct:  162 EVRFIISPELSLQGEDIPLDILYEDDEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKSGADGNGLGVAEAAFQSVPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAQRRISKSYLAVCVGNPG-------KAATIDVPIGRHPRDRQRMVAVPT-IQPNIRSRRALSVVTTVAFDGKLSVAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNNDWNRRLRQSTGLTRPLLHARSLEFKHPNTGEVVSLAAPLPSDVEAVVRRIYPQVEDEHPEWL 442          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A836CH15_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH15_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.170e-98
Identity = 159/287 (55.40%), Postives = 196/287 (68.29%), Query Frame = 1
Query:    4 VQLVVNDELSVGPEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDRLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVPVGMVAGTGTRPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERPAW 864
            V+ +   EL++GPE I L+V++ED  ++A++K  GMVVHPAPGNWNGTFVNALLHHL +  S                  G +  LR GVVHRLDKGT+GVLLAAK+  MQ +LS+LF +R+VRK+Y+ VC GN G  A        IDVPIGRH  +RQKM AVP  +  G   R A S VR  AFDG LSVAEV IETGRTHQIRVH+QHRRTP+ GD+LYGN DWNRR+ +R G++RPLLHA  + F HP TG  + + APLP D+ ++VR +YP    E P W
Sbjct:  114 VRFLATAELNLGPEDIPLDVIFEDSELLAIAKPPGMVVHPAPGNWNGTFVNALLHHLSKDGSV--------------VSLGESGDLRPGVVHRLDKGTSGVLLAAKTPIMQKQLSQLFHDRKVRKTYLAVCAGNPGDDA--------IDVPIGRHATNRQKMVAVP-DIQPGARARRALSHVRCTAFDGSLSVAEVRIETGRTHQIRVHLQHRRTPIVGDELYGNRDWNRRLQKR-GISRPLLHALRLEFTHPTTGAALRLEAPLPEDMASIVRGVYPVAIEEHPGW 376          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK)

HSP 1 Score: 276 bits (705), Expect = 1.600e-87
Identity = 139/278 (50.00%), Postives = 183/278 (65.83%), Query Frame = 1
Query:   25 ELSVGPEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDRLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVPVGMVAGTGTRPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERP 858
            E++  PE I L++LYED+ +IAV+K  GMVVHPAPG+W+GTF NAL  H+  +                    GG D LR G+VHRLDKGT+GVLLA+K+    AKLS +FA R+++K+Y+ VCVGN G           I+  I RHP +RQKMC +          R A ++V   +FD +LS+A V IETGRTHQIRVH+ HRRTPV GD+LYGNGD NRR  +RFGL RPLLHA+ +  +HP TG  +S+ AP+P D++ V+  IYP+V+ E+P
Sbjct:  133 EMAAEPEDIPLDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGE-------------DYRAAGGGDALRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTYLAVCVGNPG-------QDVKIENLIARHPKNRQKMCVIHETQEGAARARTAVTLVDGLSFDSQLSLARVQIETGRTHQIRVHLAHRRTPVLGDELYGNGDQNRRAVKRFGLQRPLLHAYQLELDHPITGEPLSLKAPVPEDMVRVLAKIYPQVEDEQP 390          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A7S2LLJ7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LLJ7_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.320e-79
Identity = 138/295 (46.78%), Postives = 179/295 (60.68%), Query Frame = 1
Query:   19 NDELSVGPEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGND-RLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVP---------------VGMVAGTGTRPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTER 855
            ++E  + P+ I + VLYED  +I V+KAAG+VVHPA GNW GT VNA+ HHL  ++  G G               G    LR G+VHRLDKGTTGV++ AK+++  + LS  FAER+V+K+YV + VGN G       +  VID PIGRHP++RQKM  VP                   A    R A S V + AFDG+LSV EV IETGRTHQIRVH+Q R  PV GDD+YG  DWNR++ ++ G+ RPLLHAH +  +HP TG  + + AP+P D+  V   I+P    ER
Sbjct:   15 SEEEVIRPQDIPIEVLYEDSDMIVVNKAAGIVVHPAAGNWEGTLVNAVAHHLMYKSEFGSGEFVGGSADDDGKDENGEAVGLRPGIVHRLDKGTTGVIVVAKTKAALSALSSAFAERKVKKTYVTIAVGNPG-------ENVVIDKPIGRHPVYRQKMRVVPDPSKGRQARVAPIFNKNKSAAQMGRRALSFVNSLAFDGKLSVTEVRIETGRTHQIRVHLQDRGCPVYGDDVYGISDWNRKLTKQRGIMRPLLHAHRLEIDHPITGEKMVLCAPMPDDMSKVADIIWPTGRDER 302          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A7S4T6Y3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T6Y3_9STRA)

HSP 1 Score: 249 bits (635), Expect = 9.680e-78
Identity = 140/307 (45.60%), Postives = 182/307 (59.28%), Query Frame = 1
Query:   40 PEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDR-----------------LRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVP----------VGMVAGTGT-------RPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERP 858
            PE I LN++YED+ II ++KAA MVVHPA GNW GT VNAL H+L + +  G G               G+                   LR G+VHRLDKGTTGVL+ AK++   A+LS+ FA+R V+K+Y+ + VGN G        G VID PIGRHP HRQ+M  VP             V+ +G+       R A S V T AFDG+LSV +V IETGRTHQIRVH+Q RRTP+ GDD+YG  DWN+R+++   + RPLLHAH +  +HP TG  I   APL  D++    +I+P+   E+P
Sbjct:   46 PEDIPLNIIYEDEDIIVLNKAADMVVHPAAGNWEGTVVNALAHYLTQVSPFGSGEFVSLEEGGAEIESLGDHEEDEIEVEGTDGEAAATFLRPGIVHRLDKGTTGVLMVAKTKQALAELSKSFADRTVKKTYIAITVGNPG-------RGVVIDKPIGRHPKHRQRMRVVPDHRNNAYGGRKSKVSNSGSMSLSQMGRRALSRVDTLAFDGKLSVVQVNIETGRTHQIRVHLQDRRTPIYGDDVYGLPDWNKRLSKTRNVNRPLLHAHRLEIDHPTTGERIVFTAPLADDMIQTADTIWPDGRLEQP 345          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A7S4JE35_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JE35_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.220e-77
Identity = 145/302 (48.01%), Postives = 179/302 (59.27%), Query Frame = 1
Query:   40 PEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGN-------------DRLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVP-------VGMVAGTGTRP---------ARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERP 858
            P+ I L+VL+ED+ +I ++KAAGMVVHPA GNW+GT VNAL H+L + +S G G               G               + R GVVHRLDKGTTGVL+ AK++   A LS  FA+RR +K+YV V VGN G           ID PIGRHP HRQ+M  VP       +G     G  P         A S V T AFDGRLSVAEV IETGRTHQIRVH+Q RRTPV GDD+YG  DWN+R+A+   + RPLLHA  +  +HP TG  ++  APL  D+  +V  I+P+   ERP
Sbjct:  221 PQDIPLDVLFEDEHMIVLNKAAGMVVHPAAGNWDGTVVNALAHYLAKVSSHGAGDFVLPEGGTTAEEEDGALGAVLVEGTDGEAQKFRPGVVHRLDKGTTGVLVVAKTREALAALSESFAQRRAKKAYVTVTVGNPG-------KRVTIDRPIGRHPTHRQRMRVVPEPSRKDLIGRRPAPGAPPRTPSQAGRRALSFVDTLAFDGRLSVAEVRIETGRTHQIRVHLQDRRTPVYGDDVYGLPDWNKRLAKTHSVERPLLHAAKLEIDHPVTGERLTFRAPLAQDMAKIVDGIWPQGREERP 515          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A4D9DAN8_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAN8_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.730e-77
Identity = 152/337 (45.10%), Postives = 186/337 (55.19%), Query Frame = 1
Query:    7 QLVVNDELS-VGPEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDRLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVPVGMVAGTGTRP-------------------------------------------------ARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVD-TERPAW 864
            Q   N+ L+ V  E I L+VLYED+ +IAV+KA GMVVHPAPGN NGTFVNALL H+ R+    GG                    R GVVHRLDKGT+GVLLAAK+    A LS  FAERRV K+Y+ + +GN          GAVIDVPIGRHP  RQ+M        + T + P                                                 ARS V+T AFDGRLSV EV IETGRTHQIRVH+QHRR PV GD+LYGN  WN R  +R+G+ RP+LHA  +  +HP TG  + ++AP+P D+L+V   I+P+V   E   W
Sbjct:  145 QCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARR----GGEIEEVVGSEG----------RPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSS------QGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASNAQDAVLNYDGYSEDYQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEW 461          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A7S1Z3B5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3B5_9STRA)

HSP 1 Score: 248 bits (632), Expect = 2.820e-75
Identity = 139/307 (45.28%), Postives = 182/307 (59.28%), Query Frame = 1
Query:   40 PEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDR-----------------LRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVP----------VGMVAGTGT-------RPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERP 858
            PE I LN++YED+ II ++KAA MVVHPA GNW GT VNAL H+L + +  G G               G+                   LR G+VHRLDKGTTGVL+ AK++   A+LS+ FA+R V+K+Y+ + VGN G        G VID PIGRHP HRQ+M  VP             V+ +G+       R A S V T AFDG+LSV +V IETGRTHQIRVH+Q RRTP+ GDD+YG  DWN+R+++   + RPLLHAH +  +HP TG  +   APL  D++    +I+P+   E+P
Sbjct:  215 PEDIPLNIIYEDEDIIVLNKAADMVVHPAAGNWEGTVVNALAHYLTQVSPFGSGEFVSLEEGGAEIESLGDHEEDEIEVEGTDGEAAATFLRPGIVHRLDKGTTGVLMVAKTKQALAELSKSFADRTVKKTYIAITVGNPG-------RGVVIDKPIGRHPKHRQRMRVVPDHRNNAYGGRKSKVSNSGSMSLSQMGRRALSRVDTLAFDGKLSVVQVNIETGRTHQIRVHLQDRRTPIYGDDVYGLPDWNKRLSKTRNVNRPLLHAHRLEIDHPTTGERMVFTAPLADDMIQTADTIWPDGRLEQP 514          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: B7GAM3_PHATC (Pseudouridine synthase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAM3_PHATC)

HSP 1 Score: 234 bits (596), Expect = 3.530e-72
Identity = 121/272 (44.49%), Postives = 168/272 (61.76%), Query Frame = 1
Query:   43 EPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGNDRLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVPVGMVAGTGTRPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERP 858
            + + L++++ED+ +I ++KAA MVVHPA GNW+GT VNAL ++L  ++ +                       R G+VHRLDKGTTGVL+ AK+    A LS  FA R+V+K+Y+ + VGN G          VID PIGRHP+HRQ+M  VP      +  R A S V T AFDG+LS+ +V IETGRTHQIRVH+Q R TP+ GDD+YG  DWN+++++   + RPLLHA+ +   HP TG  +   A L  D+  +  +IYP+ + E P
Sbjct:   69 QDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSES--------------------ISFRPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPG-------KHVVIDKPIGRHPLHRQRMRVVPDPHQKNSTGRRALSYVDTLAFDGKLSLVQVRIETGRTHQIRVHLQDRHTPIYGDDIYGLADWNKKLSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLADDMKRITTTIYPDSEKEIP 313          
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Match: A0A448ZFJ4_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFJ4_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.180e-69
Identity = 124/287 (43.21%), Postives = 167/287 (58.19%), Query Frame = 1
Query:   49 IALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTFVNALLHHLDRQNSAGGGSXXXXXXXXXXXXXGGND---RLRAGVVHRLDKGTTGVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVIDVPIGRHPIHRQKMCAVPVG--------------------MVAGTGTRPARSVVRTAAFDGRLSVAEVAIETGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMSFEHPDTGRLISIMAPLPADLLAVVRSIYPE 840
            I L ++YED+ ++ ++K AGMVVHPA GNW+GT VNAL ++L   +  G G                +D    LR G+VHRLDKGTTG+L+ +K+     KLS  FA R+V+K+Y+ V VGN G           ID PIGRHPIHRQKM  VP                        +    R A S V    FDG+LS+ +V IETGRTHQIRVH+Q R TP+ GDD+YG  DWN+R+ +  G+ RPLLHAH +   HP TG  +  +AP+  D++++ + I+P+
Sbjct:  144 IPLKIIYEDEHMVVINKDAGMVVHPAAGNWDGTVVNALAYYLANDSPYGTGDFVDGDGKSTLIGNDDDDDILSLRPGIVHRLDKGTTGILIVSKTVEALTKLSEAFASRKVKKTYLAVTVGNPG-------KRVKIDKPIGRHPIHRQKMRVVPDPHRKNSSGISPKDRLRFKNSFQSSSQSGRRALSFVDALQFDGKLSLVQVRIETGRTHQIRVHLQDRHTPIYGDDVYGISDWNKRLQKVHGIERPLLHAHRLEISHPITGEHMVFIAPMSEDMVSIAKGIWPD 423          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9529.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM8_ECTSI2.970e-11259.86Pseudouridine synthase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836CH15_9STRA1.170e-9855.40Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7S3XXK7_HETAK1.600e-8750.00Pseudouridine synthase n=1 Tax=Heterosigma akashiw... [more]
A0A7S2LLJ7_9STRA1.320e-7946.78Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4T6Y3_9STRA9.680e-7845.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4JE35_9STRA1.220e-7748.01Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A4D9DAN8_9STRA2.730e-7745.10PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S1Z3B5_9STRA2.820e-7545.28Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7GAM3_PHATC3.530e-7244.49Pseudouridine synthase (Fragment) n=1 Tax=Phaeodac... [more]
A0A448ZFJ4_9STRA1.180e-6943.21PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9529contigP-wetherbeei_contig9529:65..1012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFM8
PFAMsPseudoU_synth_2,S4
Model size867
Max annot lvl2759|Eukaryota
KEGG koko:K06180
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.87e-113
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Ec32 ortholog descriptionPseudouridine synthase, RluD
Ec32 orthologEc-04_001540.1
EC5.4.99.23
Descriptionpseudouridine synthase activity
Cds size867
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187097.582136-CDS-P-wetherbeei_contig9529:64..3171683187097.582136-CDS-P-wetherbeei_contig9529:64..317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9529 65..317 +
1683187097.5967617-CDS-P-wetherbeei_contig9529:398..10121683187097.5967617-CDS-P-wetherbeei_contig9529:398..1012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9529 399..1012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9529.1.1prot_P-wetherbeei_contig9529.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9529 65..1012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9529.1.1

>prot_P-wetherbeei_contig9529.1.1 ID=prot_P-wetherbeei_contig9529.1.1|Name=mRNA_P-wetherbeei_contig9529.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
QVQLVVNDELSVGPEPIALNVLYEDDSIIAVSKAAGMVVHPAPGNWNGTF
VNALLHHLDRQNSAGGGSGGGGISGGFSGGSGGNDRLRAGVVHRLDKGTT
GVLLAAKSQSMQAKLSRLFAERRVRKSYVVVCVGNSGGGADAGPDGAVID
VPIGRHPIHRQKMCAVPVGMVAGTGTRPARSVVRTAAFDGRLSVAEVAIE
TGRTHQIRVHMQHRRTPVAGDDLYGNGDWNRRVAQRFGLARPLLHAHSMS
FEHPDTGRLISIMAPLPADLLAVVRSIYPEVDTERPAWI
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mRNA from alignment at P-wetherbeei_contig9529:65..1012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9529.1.1 ID=mRNA_P-wetherbeei_contig9529.1.1|Name=mRNA_P-wetherbeei_contig9529.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=948bp|location=Sequence derived from alignment at P-wetherbeei_contig9529:65..1012+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCAACTTGTCGTGAACGACGAGCTGTCGGTGGGGCCCGAGCCCAT CGCGCTGAACGTCTTGTACGAGGACGACAGCATCATCGCCGTGTCGAAAG CGGCCGGCATGGTCGTCCACCCGGCGCCCGGAAACTGGAACGGCACCTTT GTCAATGCCCTGCTGCACCACCTCGACCGACAAAACAGCGCCGGCGGCGG CAGCGGAGGTGGCGGCATTAGCGGCGGCTTCAGTGGCGGCAGCGGCGGCA ACGGTAGTGGGAGCAGCGGCGGCACCAGAAGCAAAAGCGGAAGCGTTACC GGAAACGGACGGATCCAGGACATCGGGGGCAGAGACCGGCTCCGCGCGGG CGTCGTCCACCGGCTAGACAAGGGTACGACCGGCGTGCTCCTGGCCGCAA AGAGCCAGTCCATGCAGGCCAAGCTGAGCCGGCTCTTCGCCGAGCGTCGC GTCCGCAAGTCGTATGTTGTCGTCTGCGTCGGCAACAGTGGTGGCGGTGC CGACGCCGGCCCTGACGGCGCTGTCATCGACGTACCGATCGGGCGGCACC CCATCCACCGCCAGAAGATGTGCGCGGTGCCGGTGGGCATGGTCGCGGGC ACCGGCACGCGTCCGGCGCGCTCGGTCGTCCGGACAGCGGCGTTCGACGG CCGGCTGAGCGTGGCCGAGGTGGCCATCGAGACCGGGCGGACGCACCAGA TCCGCGTGCACATGCAGCACCGCCGAACGCCCGTCGCGGGGGACGACCTG TACGGGAACGGCGACTGGAACCGCCGCGTTGCACAGCGCTTTGGGCTGGC GCGGCCCCTGCTGCACGCCCATTCCATGTCCTTCGAGCACCCGGATACGG GGCGGCTTATTTCCATCATGGCGCCGCTGCCGGCGGACCTGCTGGCGGTC GTGCGCAGCATCTACCCGGAGGTGGACACCGAGCGGCCGGCATGGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9529:65..1012+

>mRNA_P-wetherbeei_contig9529.1.1 ID=mRNA_P-wetherbeei_contig9529.1.1|Name=mRNA_P-wetherbeei_contig9529.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig9529:65..1012+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCAACTTGTCGTGAACGACGAGCTGTCGGTGGGGCCCGAGCCCAT
CGCGCTGAACGTCTTGTACGAGGACGACAGCATCATCGCCGTGTCGAAAG
CGGCCGGCATGGTCGTCCACCCGGCGCCCGGAAACTGGAACGGCACCTTT
GTCAATGCCCTGCTGCACCACCTCGACCGACAAAACAGCGCCGGCGGCGG
CAGCGGAGGTGGCGGCATTAGCGGCGGCTTCAGTGGCGGCAGCGGCGGCA
ACGACCGGCTCCGCGCGGGCGTCGTCCACCGGCTAGACAAGGGTACGACC
GGCGTGCTCCTGGCCGCAAAGAGCCAGTCCATGCAGGCCAAGCTGAGCCG
GCTCTTCGCCGAGCGTCGCGTCCGCAAGTCGTATGTTGTCGTCTGCGTCG
GCAACAGTGGTGGCGGTGCCGACGCCGGCCCTGACGGCGCTGTCATCGAC
GTACCGATCGGGCGGCACCCCATCCACCGCCAGAAGATGTGCGCGGTGCC
GGTGGGCATGGTCGCGGGCACCGGCACGCGTCCGGCGCGCTCGGTCGTCC
GGACAGCGGCGTTCGACGGCCGGCTGAGCGTGGCCGAGGTGGCCATCGAG
ACCGGGCGGACGCACCAGATCCGCGTGCACATGCAGCACCGCCGAACGCC
CGTCGCGGGGGACGACCTGTACGGGAACGGCGACTGGAACCGCCGCGTTG
CACAGCGCTTTGGGCTGGCGCGGCCCCTGCTGCACGCCCATTCCATGTCC
TTCGAGCACCCGGATACGGGGCGGCTTATTTCCATCATGGCGCCGCTGCC
GGCGGACCTGCTGGCGGTCGTGCGCAGCATCTACCCGGAGGTGGACACCG
AGCGGCCGGCATGGATC
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