mRNA_P-wetherbeei_contig9331.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9331.1.1
Unique NamemRNA_P-wetherbeei_contig9331.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A7S2SBL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBL1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.240e-9
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:  405 ECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE----GGAGG 554
            E  RLR +N +L  EL AFDLDFFEEIEDLKYKY++AV+KLRQ+E    GG GG
Sbjct:  683 ELTRLRDENAKLKQELSAFDLDFFEEIEDLKYKYAEAVKKLRQFEAASDGGGGG 736
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A7S3XY01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY01_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-8
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:  399 EAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYEGG 545
            E E  RLR +N +L  ELQAFDLDFFEEIEDLK+KY++A RKL+ Y+ G
Sbjct:  225 EEENARLREENAKLARELQAFDLDFFEEIEDLKFKYAEAQRKLQAYQNG 273
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: K3WSN7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSN7_GLOUD)

HSP 1 Score: 62.0 bits (149), Expect = 6.370e-8
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE 539
            ELEA  E L  +N +L  EL AFD +FFEEIEDLKYKY+QAVR+ +Q E
Sbjct:  148 ELEAHIEALEEENAKLQNELAAFDEEFFEEIEDLKYKYAQAVREKQQLE 196
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A7S2SL49_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SL49_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.400e-8
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQ 533
            +L  E +RL R+N+RL  EL AFDLDFFEEIEDLKYKY QAV++ RQ
Sbjct: 2309 DLITENQRLERENQRLLNELNAFDLDFFEEIEDLKYKYQQAVQENRQ 2355
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A0P1A9G6_PLAHL (Centrosomeassociated protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9G6_PLAHL)

HSP 1 Score: 63.2 bits (152), Expect = 1.690e-7
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE 539
            ELEA+   L  +N +L  EL AFD DFFEEIEDLKYKY+QAVR  RQ E
Sbjct: 2265 ELEAQVHELEDENTKLTNELSAFDEDFFEEIEDLKYKYTQAVRDKRQLE 2313
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A329RIS4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RIS4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.040e-7
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYEGGAGGXXXXXPSAAGAGPSAAENR 611
            ELEA+   L  +N +L  EL AFD DFFEEIEDLKYKY+QAVR  RQ E           SA G  P++A +R
Sbjct: 2269 ELEAQVLELEDENTKLTNELAAFDEDFFEEIEDLKYKYTQAVRDKRQLE------KRFARSADGISPASAPSR 2335
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A3F2RLU5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLU5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.830e-7
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE----GGAGG 554
            EL+A+   L  +N +L  EL AFD DFFEEIEDLKYKY+QAVR  RQ E    GG GG
Sbjct: 1269 ELQAQVLELEDENTKLTNELAAFDEDFFEEIEDLKYKYAQAVRDKRQLEKRLAGGPGG 1326
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A3R7G134_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G134_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.040e-7
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE----GGAGG 554
            EL+A+   L  +N +L  EL AFD DFFEEIEDLKYKY+QAVR  RQ E    GG GG
Sbjct: 2031 ELQAQVLELEDENTKLTNELAAFDEDFFEEIEDLKYKYAQAVRDKRQLEKRLTGGLGG 2088
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A662WHV4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHV4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.080e-7
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:  393 ELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE----GGAGG 554
            ELE +   L  +N +L  EL AFD DFFEEIEDLKYKY+QAVR  RQ E    GG GG
Sbjct: 2312 ELETQVFELEDENTKLTNELAAFDEDFFEEIEDLKYKYAQAVRDKRQLEKRLAGGTGG 2369
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BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Match: A0A7S2F5N7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5N7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.450e-7
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 3 
Query:  411 ERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQAVRKLRQYE 539
            E L+++N RL GEL  FD+ FF+EIEDLKYKY+QA+RKL+ Y+
Sbjct:  188 EALQKENVRLKGELSHFDVSFFDEIEDLKYKYAQALRKLKYYD 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9331.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SBL1_9STRA2.240e-966.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3XY01_HETAK1.680e-865.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3WSN7_GLOUD6.370e-863.27Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2SL49_9STRA9.400e-868.09Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A0P1A9G6_PLAHL1.690e-765.31Centrosomeassociated protein n=1 Tax=Plasmopara ha... [more]
A0A329RIS4_9STRA3.040e-752.05Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3F2RLU5_9STRA3.830e-760.34Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3R7G134_9STRA4.040e-760.34Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A662WHV4_9STRA4.080e-760.34Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S2F5N7_9STRA6.450e-762.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9331contigP-wetherbeei_contig9331:2..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T007981
Model size827
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.3e-09
EggNOG OGs29FR3@1|root,2RNWW@2759|Eukaryota,1MJGG@121069|Pythiales
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187088.4433808-UTR-P-wetherbeei_contig9331:1..2161683187088.4433808-UTR-P-wetherbeei_contig9331:1..216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9331 2..216 +
1683187088.4763665-UTR-P-wetherbeei_contig9331:1159..13001683187088.4763665-UTR-P-wetherbeei_contig9331:1159..1300Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9331 1160..1300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187088.4521663-CDS-P-wetherbeei_contig9331:216..4691683187088.4521663-CDS-P-wetherbeei_contig9331:216..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9331 217..469 +
1683187088.4604383-CDS-P-wetherbeei_contig9331:713..7271683187088.4604383-CDS-P-wetherbeei_contig9331:713..727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9331 714..727 +
1683187088.4684691-CDS-P-wetherbeei_contig9331:955..11591683187088.4684691-CDS-P-wetherbeei_contig9331:955..1159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9331 956..1159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9331.1.1prot_P-wetherbeei_contig9331.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9331 217..1159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9331.1.1

>prot_P-wetherbeei_contig9331.1.1 ID=prot_P-wetherbeei_contig9331.1.1|Name=mRNA_P-wetherbeei_contig9331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MGPVVLRLLLFQPPSAAPALFYWPHRADLAASRGSTGGSEHGGYGGSYSG
RGTSGRGTAELEAECERLRRDNERLNGELQAFDLDFFEEIEDLKYKYSQA
VRKLRQYEGGAGGGGGSGPSAAGAGPSAAENRGGGDRGGAGRGGRGLVGS
GRFPRD*
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mRNA from alignment at P-wetherbeei_contig9331:2..1300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9331.1.1 ID=mRNA_P-wetherbeei_contig9331.1.1|Name=mRNA_P-wetherbeei_contig9331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1299bp|location=Sequence derived from alignment at P-wetherbeei_contig9331:2..1300+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAGGTGAGTTTGAAGGCTTTGGATTCGGTGCAATTAAGCTGCCTCGTG
TAAACTTCTGTTGTATCTGCGCTTTGTTTAATAGAAATGGTTGGTGAAGA
CTCTGCCGCTTTTGTTGCCTTCGTTTCAAGGCAGGAGATATCTTTCTCTT
CGCGATAGAAACGATGGTTTTTGCTGTTCACGGTAGCCGGCAGCTTTTCA
TGGGCATTTCACGCAATGGGACCTGTGGTGTTGCGCTTGCTGCTCTTTCA
GCCCCCTTCCGCTGCGCCGGCCCTGTTCTACTGGCCACACAGAGCGGATC
TCGCGGCAAGCCGCGGCTCGACCGGCGGTTCTGAGCACGGTGGCTACGGC
GGCAGCTACAGTGGCAGGGGCACGAGCGGGCGAGGGACGGCGGAGCTGGA
GGCGGAGTGCGAGCGGTTGCGGCGCGATAACGAGCGACTTAACGGCGAAC
TGCAGGCCTTCGATCTCGGTGAGTGTTCGTGCTGCCATGCCTGTGGTCTC
CTCCCTATTGCTGGCGGCGGCTTACTTTCGATTTCCGCGGCCCTGCTTTC
TGCTGACGGAGCTCTTGCCCGGGGCTTTTTCCCCGCGTGCCGCTTGTTCT
GTGACTGACCCGGATTTCGTCCGACTCCCCAAACTCGCACACTTCCGGCG
TGTTCCTTCTCGCCGCTCCATCTCCTGATCTCGGGATGGTTACGGGCGCT
GGCGGCAAACAGACTTCTTCGAAGAGGTGAGCACAGCTACTGAGCAGTTA
CTTTGGCAGGCTTTCTCGCTGGAGAGTTTCGACTGTGGGAAGTATGCCGC
TGCTTTTCTGTGTCAGCTGACCGCAGCTTTCCGGTCCAGGCCTCCTCATT
CATGGAAAACAAACTAATGTGCATCACGAATTCACAAACGCACGGCTGTT
TCCGTTCCCGTCGTCCATGTCCTGGACGGAACCGTTCTGTTCCGTCGGCT
CCAGATTGAGGACCTCAAGTACAAGTACAGTCAGGCCGTCCGAAAACTGC
GCCAGTACGAAGGCGGCGCCGGCGGCGGTGGCGGCAGCGGTCCATCGGCT
GCCGGCGCCGGTCCCTCCGCTGCCGAAAATCGCGGCGGAGGTGACCGCGG
TGGGGCGGGACGTGGTGGCCGTGGTCTGGTGGGCAGCGGGCGCTTCCCAA
GGGATTAATTAACCCGCCGCGGTCAAATGGCGGCGGCTGCAGCTACGTGG
CTGCTGATATGTGCACAAAAACCGACGTCAAAGGGATGAAAGGGTGACTT
AGACCCCAAGTTGCCGCTTCACATGAAAAATAGAGACGATGTTGTTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9331:2..1300+

>mRNA_P-wetherbeei_contig9331.1.1 ID=mRNA_P-wetherbeei_contig9331.1.1|Name=mRNA_P-wetherbeei_contig9331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig9331:2..1300+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACCTGTGGTGTTGCGCTTGCTGCTCTTTCAGCCCCCTTCCGCTGC
GCCGGCCCTGTTCTACTGGCCACACAGAGCGGATCTCGCGGCAAGCCGCG
GCTCGACCGGCGGTTCTGAGCACGGTGGCTACGGCGGCAGCTACAGTGGC
AGGGGCACGAGCGGGCGAGGGACGGCGGAGCTGGAGGCGGAGTGCGAGCG
GTTGCGGCGCGATAACGAGCGACTTAACGGCGAACTGCAGGCCTTCGATC
TCGACTTCTTCGAAGAGATTGAGGACCTCAAGTACAAGTACAGTCAGGCC
GTCCGAAAACTGCGCCAGTACGAAGGCGGCGCCGGCGGCGGTGGCGGCAG
CGGTCCATCGGCTGCCGGCGCCGGTCCCTCCGCTGCCGAAAATCGCGGCG
GAGGTGACCGCGGTGGGGCGGGACGTGGTGGCCGTGGTCTGGTGGGCAGC
GGGCGCTTCCCAAGGGATTAA
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