mRNA_P-wetherbeei_contig1024.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1024.2.1
Unique NamemRNA_P-wetherbeei_contig1024.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1024.2.1 vs. uniprot
Match: D8LSW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW7_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 4.240e-44
Identity = 82/182 (45.05%), Postives = 120/182 (65.93%), Query Frame = 1 
Query:    1 GKRSTRDWDLVDFDKLEEEWQEGDDEAELKTESQLMFDRLERRKKQYVQASAQPLDPQALAKMGPKAMQRFLASQKDAAGPTMMFVKLRATDAAMSP-------TAEKEDAERVATMYREMALVGGLEVTPYYVQERTLLVSMQKGWEGQEALDFLLSRLEVDKVTWNNQDFYPDRDSDGEL 525
            GKRS +DW  +D ++LE++W++GD++ ELKTE Q  F+ LERR+KQ  QA+A   DP +L  M    +    A QKDA GPTM+F ++R+     +        +  KE+ E+V    +++A +G LEV+ Y +   ++LVS Q+GWEGQ+ LDFLLSR EV KVTWN++DFYP ++ + EL
Sbjct:   24 GKRSAKDWSKMDLNELEKQWEDGDEDEELKTEEQAKFENLERRRKQ-AQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQVRSGGLGETGGSGDNGGSISKEETEKVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQILDFLLSRPEVSKVTWNSRDFYPPKEGEEEL 204
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BLAST of mRNA_P-wetherbeei_contig1024.2.1 vs. uniprot
Match: A0A7S2RHB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.570e-28
Identity = 62/166 (37.35%), Postives = 103/166 (62.05%), Query Frame = 1 
Query:    7 RSTRDWDLVDFDKLEEEWQEGDDEAELKTESQLMFDRLERRKKQYVQASAQPLDPQALAKMGPKAMQRFLASQKDAAGPTMMFVKLRATDAAMSPTAEKEDAERVATMYREMALVGGLEVTPYYVQERTLLVSMQKGWEGQEALDFLLSRLEVDKVTWNNQDFYPD 504
            RS++DW  VDFD LEEEW+ GD+E EL T+ +L+F  ++RR++Q +    + LD + +              Q+  AGPTMMF++LR  +   +    +E+   +  +++++   GGL VT + ++   +L SMQKGW+G +  +FLL++ +V KVTW+NQD+ P+
Sbjct:   21 RSSKDWGKVDFDALEEEWKYGDEEDELITDDELLFREMQRRREQGI--DIKNLDVERVK------------HQQSMAGPTMMFIELRPREGGYA----EEELYNITGIWKDLMYTGGLTVTFFNIENDKVLCSMQKGWDGIQVKEFLLTQSQVAKVTWDNQDYVPE 168
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BLAST of mRNA_P-wetherbeei_contig1024.2.1 vs. uniprot
Match: A0A7S2H4A6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4A6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.060e-14
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:  304 EDAERVATMYREMALVGGLEVTPYYVQERTLLVSMQKGWEGQEALDFLLSRLEVDKVTWNNQDFYPDR 507
            ED   ++  ++E+    G++V  Y ++E +L+VS+QKGW+G+    FLL R+EV KVTW+NQD YP+R
Sbjct:   14 EDIMTLSGQWKELLFTAGVQVQIYSIEENSLIVSLQKGWDGEIVRSFLLERMEVVKVTWDNQDSYPER 81
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BLAST of mRNA_P-wetherbeei_contig1024.2.1 vs. uniprot
Match: A0A482SP59_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP59_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.630e-6
Identity = 41/169 (24.26%), Postives = 82/169 (48.52%), Query Frame = 1 
Query:   13 TRDWDLVDFDKLEEEWQEGDDEAELKTESQLMFDRLERRKKQ------YVQASAQPLDPQALAKMGPKAMQRFLASQKDAAGPTMMFVKLRATDAAMSPTAEKEDAERVATMYREMALVGGLEVTPYYVQERTLLVSMQKGWEGQEALDFLLSRLEVDKVTWNNQDFYP 501
             ++W+ +D++ L+++W+ GDD+ EL+ + + +    E+++ +      +   +A   DP             FL S     G  M+FV L+          +K   E ++  Y  +   GG+  T Y + E+ LL+++ K W+ ++ L FL  + EV+  T N++ + P
Sbjct:   21 NKNWNKIDYNDLDKQWESGDDQEELEHDFEHIRKIQEKKRPKLNMEDGHAIRNAYQQDP-------------FLFS----GGGMMVFVDLKPKQPDGKEW-DKRSTELLSKRYSTLLRSGGVVGTVYNIDEKRLLINVDKSWQTKDMLTFLAKQAEVESFTANSKTYSP 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1024.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSW7_ECTSI4.240e-4445.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RHB1_9STRA5.570e-2837.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2H4A6_9STRA9.060e-1445.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482SP59_9ARCH2.630e-624.26Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1024contigP-wetherbeei_contig1024:2053..3040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI56807
Model size528
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.74e-07
EggNOG OGs2E3G1@1|root,2SAIN@2759|Eukaryota,3QG67@4776|Peronosporales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001680.1
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.580856-CDS-P-wetherbeei_contig1024:2052..21901683185860.580856-CDS-P-wetherbeei_contig1024:2052..2190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1024 2053..2190 +
1683185860.5890965-CDS-P-wetherbeei_contig1024:2345..26211683185860.5890965-CDS-P-wetherbeei_contig1024:2345..2621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1024 2346..2621 +
1683185860.5993576-CDS-P-wetherbeei_contig1024:2926..30401683185860.5993576-CDS-P-wetherbeei_contig1024:2926..3040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1024 2927..3040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1024.2.1prot_P-wetherbeei_contig1024.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1024 2053..3040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1024.2.1

>prot_P-wetherbeei_contig1024.2.1 ID=prot_P-wetherbeei_contig1024.2.1|Name=mRNA_P-wetherbeei_contig1024.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
GKRSTRDWDLVDFDKLEEEWQEGDDEAELKTESQLMFDRLERRKKQYVQA
SAQPLDPQALAKMGPKAMQRFLASQKDAAGPTMMFVKLRATDAAMSPTAE
KEDAERVATMYREMALVGGLEVTPYYVQERTLLVSMQKGWEGQEALDFLL
SRLEVDKVTWNNQDFYPDRDSDGEL*
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mRNA from alignment at P-wetherbeei_contig1024:2053..3040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1024.2.1 ID=mRNA_P-wetherbeei_contig1024.2.1|Name=mRNA_P-wetherbeei_contig1024.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=988bp|location=Sequence derived from alignment at P-wetherbeei_contig1024:2053..3040+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCGGAGCACTCGAGACTGGGACTTGGTCGATTTCGACAAGCTCGA
GGAAGAATGGCAGGAAGGCGACGACGAGGCGGAACTCAAGACGGAATCTC
AGCTGATGTTTGACCGGCTGGAAAGGCGAAAGAAGCAGGTAGGAGAATTG
CAGTCTTGTTCTGCTGGTACGATGGAAGGTAGGGTCCAACGTTTACCTTC
AAACCAGGGGAAGGCTACCAATCTATTCTCAGAAATGTTAGAACATTTAA
AGCTTACCCCCAAAGCTCTTTAGGGTGGCCCTCGGTTCCAAAGTATGTTC
AGGCTTCGGCGCAGCCGTTGGATCCCCAGGCGCTCGCCAAAATGGGACCG
AAGGCAATGCAGCGCTTCCTGGCCTCCCAAAAGGACGCCGCGGGCCCCAC
CATGATGTTCGTCAAGCTGCGAGCGACCGATGCCGCCATGTCGCCGACCG
CCGAGAAGGAAGACGCGGAGCGGGTCGCCACGATGTACCGGGAGATGGCC
CTCGTCGGAGGCCTCGAAGTGACTCCATATTACGTGCAGGAGCGCACTCT
GCTGGTGTCCATGCAAAAGGTGAGAGGAGTGGTCCGTGGAGCCAGTTGAC
GGCGCCGGACGGGTGACGGCTTGAATGAGGGGATTTGTCACCGCGACGTT
CCTGAAGGAGCTCATACGAGCACGGAGTCATCTGCATTTGTCAATACAGT
ACTGGCTGGTGCTATTCTGGCCAGCATAGAATATAAGCGATTGCGAAAAT
TTGCCCGAAAAGCACTGTCGATTGCGCTTTCAATCCTTCTCCTAGTCGTG
ACTCCTCCGCCCTCTTTGCGATTTCATCACCTCATTCCTCGCCGCCTTTG
CTGACCCCCGCCCCACTCGGTCAGGGATGGGAAGGTCAGGAGGCGCTGGA
TTTTTTGCTCAGTCGCCTCGAAGTGGACAAGGTCACGTGGAACAATCAGG
ATTTCTATCCAGATCGCGACAGCGATGGCGAGCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1024:2053..3040+

>mRNA_P-wetherbeei_contig1024.2.1 ID=mRNA_P-wetherbeei_contig1024.2.1|Name=mRNA_P-wetherbeei_contig1024.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig1024:2053..3040+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCGGAGCACTCGAGACTGGGACTTGGTCGATTTCGACAAGCTCGA
GGAAGAATGGCAGGAAGGCGACGACGAGGCGGAACTCAAGACGGAATCTC
AGCTGATGTTTGACCGGCTGGAAAGGCGAAAGAAGCAGTATGTTCAGGCT
TCGGCGCAGCCGTTGGATCCCCAGGCGCTCGCCAAAATGGGACCGAAGGC
AATGCAGCGCTTCCTGGCCTCCCAAAAGGACGCCGCGGGCCCCACCATGA
TGTTCGTCAAGCTGCGAGCGACCGATGCCGCCATGTCGCCGACCGCCGAG
AAGGAAGACGCGGAGCGGGTCGCCACGATGTACCGGGAGATGGCCCTCGT
CGGAGGCCTCGAAGTGACTCCATATTACGTGCAGGAGCGCACTCTGCTGG
TGTCCATGCAAAAGGGATGGGAAGGTCAGGAGGCGCTGGATTTTTTGCTC
AGTCGCCTCGAAGTGGACAAGGTCACGTGGAACAATCAGGATTTCTATCC
AGATCGCGACAGCGATGGCGAGCTCTGA
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