mRNA_P-wetherbeei_contig882.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig882.3.1
Unique NamemRNA_P-wetherbeei_contig882.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig882.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig882contigP-wetherbeei_contig882:4514..6966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2241
Hectar predicted targeting categoryother localisation
Exons2
Cds size2238
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.4096618-CDS-P-wetherbeei_contig882:4515..55961683187061.4096618-CDS-P-wetherbeei_contig882:4515..5596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig882 4516..5596 -
1683187061.4202533-CDS-P-wetherbeei_contig882:5809..69661683187061.4202533-CDS-P-wetherbeei_contig882:5809..6966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig882 5810..6966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig882.3.1prot_P-wetherbeei_contig882.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig882 4516..6966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig882.3.1

>prot_P-wetherbeei_contig882.3.1 ID=prot_P-wetherbeei_contig882.3.1|Name=mRNA_P-wetherbeei_contig882.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=746bp
FQPRAESWLPVRSSSNEASFNGSFSQPHDSYQRQNIATSGGAHPQISECP
IHEASRLCDEQRSHPPSQSQRQEQQHSQQQQQQQQAQQQPQQQQFPPQHQ
QFSIHQSQQPQGQGFWQVANGSPHQPQQQQVSQPPPQPPQQRHFVPEGSW
GHGGASSNTSPSGAPAQFAPIGSRYAVRAIGTPLLLTPTPTVHGPPPHTL
VVIGKGNQSAAHAQELDPGQWQYARGYGSHQPSAQAAGMLTGGLFSALGG
LYVGGASQSYPWWAAAPGLGPKSLQYSAQHPSQQKQQQVAGAGVGRPRQG
GDRGGGGGSRDSSRDRGWQQDGGGGGGAASSGDRGREGGGHGWQGNGNLP
NEGSKQQITETRFAEQASSRGRDGRRDFLAAERSLMKERHEQPRDDAELR
RDEKRQKREHGATAAAVPRSAAPQPEAKIRSWGDANKAKAAASGGRGASF
AVRLPPRPPRAETAAADGGGGRAGAAARSAAAAGAKPLGAATVAAGDGYS
RMVAVAKSAIAAEAKPPPGAAAAPSGGGSDRGAVAAKSAAATDAKKPSTV
AVAAGGDSGRVAPAAVSAASADAEQLPPPLDENEGQQRGEAKRRTDEPAK
SSGASVGASSPPLAREPVEAATTPQSNSGDGGNGSDSGGGSGGKSGGGES
GSDGKTDGGDTGGGGGSSEAATGVFSPLRTNTAFAVTDAAAVAAAAATAN
GGPGTLAAARPMSPVSPPVARVNAALLSLHRNESSEYFSDSETESE
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mRNA from alignment at P-wetherbeei_contig882:4514..6966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig882.3.1 ID=mRNA_P-wetherbeei_contig882.3.1|Name=mRNA_P-wetherbeei_contig882.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2453bp|location=Sequence derived from alignment at P-wetherbeei_contig882:4514..6966- (Phaeothamnion wetherbeei SAG_119_79)
TTCCAGCCTCGTGCGGAGTCGTGGCTTCCCGTCCGCTCCAGCAGCAACGA
AGCTTCATTCAATGGCTCTTTCTCGCAGCCCCATGATTCGTACCAACGCC
AGAACATAGCGACCTCTGGTGGCGCCCATCCCCAAATATCGGAATGTCCC
ATCCATGAAGCGAGTCGACTGTGCGACGAGCAGCGAAGCCACCCACCTTC
GCAATCGCAGCGGCAGGAGCAGCAGCATTCTCAGCAGCAGCAGCAGCAGC
AGCAAGCGCAGCAGCAGCCGCAGCAGCAACAGTTCCCGCCGCAGCATCAG
CAGTTTTCGATTCACCAATCACAGCAACCGCAGGGACAGGGGTTTTGGCA
GGTGGCCAACGGCAGTCCGCATCAGCCGCAGCAACAGCAGGTGTCGCAGC
CGCCGCCGCAGCCGCCACAGCAGCGACACTTTGTTCCTGAGGGTTCTTGG
GGCCACGGCGGGGCCAGCAGCAACACCTCTCCTTCTGGTGCCCCCGCGCA
GTTCGCACCGATCGGGTCGCGCTACGCCGTAAGAGCTATCGGGACGCCCC
TGCTGCTCACGCCGACGCCGACGGTACATGGGCCGCCGCCGCACACACTT
GTGGTAATTGGCAAGGGGAATCAGTCGGCGGCGCACGCGCAGGAGCTGGA
TCCGGGCCAATGGCAGTACGCGAGAGGATATGGCAGCCACCAACCATCGG
CGCAGGCGGCAGGGATGTTGACAGGGGGGCTGTTTTCGGCGTTGGGGGGC
CTATATGTCGGCGGTGCGAGCCAAAGCTACCCGTGGTGGGCGGCGGCGCC
GGGTTTGGGGCCGAAATCGCTGCAGTACTCTGCGCAGCACCCGAGTCAGC
AGAAGCAGCAGCAGGTGGCCGGGGCTGGGGTTGGCCGGCCGCGGCAGGGC
GGGGACCGCGGCGGCGGTGGCGGCAGCCGCGACAGCAGCAGGGACCGCGG
CTGGCAGCAAGATGGTGGAGGCGGTGGCGGCGCGGCCAGCAGCGGCGATC
GTGGGCGAGAAGGGGGCGGCCATGGCTGGCAAGGGAACGGCAACCTTCCG
AACGAAGGCTCCAAGCAGCAGATCACCGAGACGCGCTTCGCGGAGCAGGC
CTCGTCAAGAGGGCGGGATGGAAGGCGAGACTTCTTGGCGGCCGAGAGGT
CTCTCATGTTGGTCGATTCTTTCTTTTCCATGTCACCGGCGACCATGTTT
TTCAGCGCCTCCACCCTCTTTTCTTTGATCTAACCCTCGCCGTCGCTCTA
CATGTCGCCTGAGAAATGCGGCCGTCTATGGTTCTGCTACTTCTGTTTGT
CGCCGTCTTTTTGCTAATGTATTTTTCTGCTCTTATGCTTTCTGTGCTTG
ACCAAATTTTCCGTTTGCAGGAAGGAGCGGCACGAGCAGCCTCGCGACGA
CGCCGAGCTGAGGCGGGACGAGAAGCGCCAGAAGCGCGAGCACGGCGCCA
CGGCCGCTGCCGTGCCGCGTTCCGCCGCGCCGCAGCCCGAGGCGAAGATT
CGGAGCTGGGGCGATGCCAACAAGGCCAAGGCGGCCGCAAGCGGCGGGCG
GGGGGCAAGTTTTGCGGTGCGGCTGCCCCCGCGGCCGCCTAGGGCCGAGA
CGGCTGCTGCCGACGGTGGTGGGGGCCGCGCTGGGGCTGCAGCCAGGTCT
GCTGCTGCGGCGGGAGCCAAACCGCTCGGCGCCGCTACTGTTGCTGCCGG
CGATGGCTACAGCCGCATGGTGGCTGTAGCCAAGTCTGCGATTGCGGCCG
AAGCCAAACCGCCGCCTGGTGCCGCTGCTGCCCCCTCCGGCGGTGGCAGC
GACCGTGGCGCGGTTGCAGCCAAGTCCGCTGCTGCGACAGATGCCAAAAA
GCCCAGCACTGTCGCGGTTGCCGCCGGAGGTGACAGCGGCCGCGTTGCGC
CAGCAGCAGTGTCTGCTGCTTCGGCGGATGCCGAGCAGCTACCGCCCCCC
TTGGACGAGAACGAGGGCCAGCAGCGGGGAGAGGCAAAGCGCCGGACTGA
CGAGCCGGCAAAGTCTTCTGGAGCGTCAGTTGGGGCCTCCAGCCCGCCGT
TGGCCCGAGAGCCAGTGGAGGCAGCAACGACACCGCAGAGCAACAGCGGT
GACGGCGGCAACGGCAGCGATAGTGGTGGCGGCAGCGGCGGCAAGAGTGG
CGGCGGTGAGAGTGGCAGCGATGGCAAGACTGACGGTGGCGATACTGGCG
GCGGTGGTGGCAGCAGTGAGGCTGCAACAGGCGTCTTTTCGCCGCTCCGC
ACTAACACCGCCTTTGCCGTGACCGATGCAGCAGCGGTGGCGGCGGCAGC
CGCTACCGCGAACGGCGGCCCGGGCACCCTCGCTGCAGCTAGGCCAATGT
CGCCCGTCAGCCCCCCGGTGGCGCGAGTGAATGCGGCTCTCCTGTCACTC
CACCGGAATGAGTCGTCGGAGTACTTCTCGGACTCGGAGACAGAGTCGGA
GGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig882:4514..6966-

>mRNA_P-wetherbeei_contig882.3.1 ID=mRNA_P-wetherbeei_contig882.3.1|Name=mRNA_P-wetherbeei_contig882.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2238bp|location=Sequence derived from alignment at P-wetherbeei_contig882:4514..6966- (Phaeothamnion wetherbeei SAG_119_79)
TTCCAGCCTCGTGCGGAGTCGTGGCTTCCCGTCCGCTCCAGCAGCAACGA
AGCTTCATTCAATGGCTCTTTCTCGCAGCCCCATGATTCGTACCAACGCC
AGAACATAGCGACCTCTGGTGGCGCCCATCCCCAAATATCGGAATGTCCC
ATCCATGAAGCGAGTCGACTGTGCGACGAGCAGCGAAGCCACCCACCTTC
GCAATCGCAGCGGCAGGAGCAGCAGCATTCTCAGCAGCAGCAGCAGCAGC
AGCAAGCGCAGCAGCAGCCGCAGCAGCAACAGTTCCCGCCGCAGCATCAG
CAGTTTTCGATTCACCAATCACAGCAACCGCAGGGACAGGGGTTTTGGCA
GGTGGCCAACGGCAGTCCGCATCAGCCGCAGCAACAGCAGGTGTCGCAGC
CGCCGCCGCAGCCGCCACAGCAGCGACACTTTGTTCCTGAGGGTTCTTGG
GGCCACGGCGGGGCCAGCAGCAACACCTCTCCTTCTGGTGCCCCCGCGCA
GTTCGCACCGATCGGGTCGCGCTACGCCGTAAGAGCTATCGGGACGCCCC
TGCTGCTCACGCCGACGCCGACGGTACATGGGCCGCCGCCGCACACACTT
GTGGTAATTGGCAAGGGGAATCAGTCGGCGGCGCACGCGCAGGAGCTGGA
TCCGGGCCAATGGCAGTACGCGAGAGGATATGGCAGCCACCAACCATCGG
CGCAGGCGGCAGGGATGTTGACAGGGGGGCTGTTTTCGGCGTTGGGGGGC
CTATATGTCGGCGGTGCGAGCCAAAGCTACCCGTGGTGGGCGGCGGCGCC
GGGTTTGGGGCCGAAATCGCTGCAGTACTCTGCGCAGCACCCGAGTCAGC
AGAAGCAGCAGCAGGTGGCCGGGGCTGGGGTTGGCCGGCCGCGGCAGGGC
GGGGACCGCGGCGGCGGTGGCGGCAGCCGCGACAGCAGCAGGGACCGCGG
CTGGCAGCAAGATGGTGGAGGCGGTGGCGGCGCGGCCAGCAGCGGCGATC
GTGGGCGAGAAGGGGGCGGCCATGGCTGGCAAGGGAACGGCAACCTTCCG
AACGAAGGCTCCAAGCAGCAGATCACCGAGACGCGCTTCGCGGAGCAGGC
CTCGTCAAGAGGGCGGGATGGAAGGCGAGACTTCTTGGCGGCCGAGAGGT
CTCTCATGAAGGAGCGGCACGAGCAGCCTCGCGACGACGCCGAGCTGAGG
CGGGACGAGAAGCGCCAGAAGCGCGAGCACGGCGCCACGGCCGCTGCCGT
GCCGCGTTCCGCCGCGCCGCAGCCCGAGGCGAAGATTCGGAGCTGGGGCG
ATGCCAACAAGGCCAAGGCGGCCGCAAGCGGCGGGCGGGGGGCAAGTTTT
GCGGTGCGGCTGCCCCCGCGGCCGCCTAGGGCCGAGACGGCTGCTGCCGA
CGGTGGTGGGGGCCGCGCTGGGGCTGCAGCCAGGTCTGCTGCTGCGGCGG
GAGCCAAACCGCTCGGCGCCGCTACTGTTGCTGCCGGCGATGGCTACAGC
CGCATGGTGGCTGTAGCCAAGTCTGCGATTGCGGCCGAAGCCAAACCGCC
GCCTGGTGCCGCTGCTGCCCCCTCCGGCGGTGGCAGCGACCGTGGCGCGG
TTGCAGCCAAGTCCGCTGCTGCGACAGATGCCAAAAAGCCCAGCACTGTC
GCGGTTGCCGCCGGAGGTGACAGCGGCCGCGTTGCGCCAGCAGCAGTGTC
TGCTGCTTCGGCGGATGCCGAGCAGCTACCGCCCCCCTTGGACGAGAACG
AGGGCCAGCAGCGGGGAGAGGCAAAGCGCCGGACTGACGAGCCGGCAAAG
TCTTCTGGAGCGTCAGTTGGGGCCTCCAGCCCGCCGTTGGCCCGAGAGCC
AGTGGAGGCAGCAACGACACCGCAGAGCAACAGCGGTGACGGCGGCAACG
GCAGCGATAGTGGTGGCGGCAGCGGCGGCAAGAGTGGCGGCGGTGAGAGT
GGCAGCGATGGCAAGACTGACGGTGGCGATACTGGCGGCGGTGGTGGCAG
CAGTGAGGCTGCAACAGGCGTCTTTTCGCCGCTCCGCACTAACACCGCCT
TTGCCGTGACCGATGCAGCAGCGGTGGCGGCGGCAGCCGCTACCGCGAAC
GGCGGCCCGGGCACCCTCGCTGCAGCTAGGCCAATGTCGCCCGTCAGCCC
CCCGGTGGCGCGAGTGAATGCGGCTCTCCTGTCACTCCACCGGAATGAGT
CGTCGGAGTACTTCTCGGACTCGGAGACAGAGTCGGAG
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