mRNA_P-wetherbeei_contig8712.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8712.2.1
Unique NamemRNA_P-wetherbeei_contig8712.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A4D9D1W3_9STRA (PlsC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1W3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.830e-21
Identity = 71/189 (37.57%), Postives = 101/189 (53.44%), Query Frame = 1
Query:    1 GVVAHAARSGNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQS-------GPSRADMAVVVRNRLQASLEDIPVTAG----------APLTWCGRLANVGAV-LATYVLTWRWGAAASSVGLRALGLTPAAAAMAFAAYVVAMTMIIRVGYCK 513
            G    A  SG +VA++PEGTRSKTGQL  FKKG F++Q +    + PVV+QG FEL PP   F   GQV + YLP I         G ++ +++  VR ++  ++ED+   A           APLTW  R  NV ++ L  +V+   W    S    R  G++ AA A AF +Y + +T  + + YCK
Sbjct:  285 GRATRACASGTAVALSPEGTRSKTGQLMRFKKGPFYVQAESRASIAPVVIQGTFELWPPKYFFTCPGQVCMNYLPPIDPDSLPAKVGKNKEELSRFVRRQMFDAIEDLTAEASSGGKGRNPSAAPLTWFQRALNVVSICLFWWVVRIVWLLVTSVSDAR--GVSRAALAGAFLSYTITVTASLYILYCK 471          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: D8LSD1_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.260e-18
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   37 VAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGP--SRADMAVVVRNRLQASLE--DIPVTAGAPLTWCGRLANVGAVLATYVLTWR 390
            VA+APEGTRSKTGQL PFKKGAFH+QEQL WPV+PV + GA+EL P        G+VV++Y   I++    SR  ++  +R  +  +L+  D+P  AGA L    R A++ A   TY+   R
Sbjct:  236 VAMAPEGTRSKTGQLGPFKKGAFHMQEQLQWPVIPVTIHGAYELFPLKWNVNQCGKVVVKYHRPIEAAEIKSREGLSQRLRQEILEALDQDDVP-EAGAALDPSRRAASLAATAFTYLAAAR 356          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: K8Z342_NANGC (1-acyl-sn-glycerol-3-phosphate acyltransferase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z342_NANGC)

HSP 1 Score: 85.1 bits (209), Expect = 3.190e-18
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 GVVAHAARSGNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQS-------GPSRADMAVVVRNRLQASLEDIPVTA 315
            G    A  SG +VA++PEGTRSKTGQL  FKKG F++Q +    + PVV+QG FEL PP   F   GQV ++YLP I         G ++ +++  VR ++  ++ED+ V A
Sbjct:    1 GRATRACASGTAVALSPEGTRSKTGQLMRFKKGPFYVQAESRASIAPVVIQGTFELWPPKYFFTCPGQVCMKYLPPIDPDSLPAKVGKNKEELSRFVRRQMFDAIEDLTVEA 112          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A662XYM7_9STRA (PlsC domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYM7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-16
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   28 GNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGPS---RADMAVVVRNRLQASLEDIPVTAGAPLTWCGRLANVGAVLATYVLTWR 390
            GNSV ++PEGTRSK G LQ FKKG F+L+E     V+P +V GA+EL PP   F + G  ++RYLP  +S P      +   + R  L+A  ED+P   G P++    L NV  +   + +T++
Sbjct:  226 GNSVCISPEGTRSKDGLLQEFKKGPFYLREDTKKNVVPAIVFGAYELWPPGRMFSIPGHTLVRYLPQYESNPKLNRNQNRLALRRIYLKAFTEDVPDHIGTPVSSNFVLKNVFYLYVIWAITYK 349          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A1V9ZV14_9STRA (PlsC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV14_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.980e-16
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   28 GNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGPSRADMAVVVRNRLQASLEDIPVTAGA 321
            G SVA++PEGTRSKTG LQ FKKG F+LQ     P+ P +V GA+EL PP   F L G+ ++RYLP     PS++      RN  + +L  I + AGA
Sbjct:  165 GRSVAISPEGTRSKTGLLQDFKKGPFYLQSDAGAPITPAIVIGAYELWPPARIFTLPGKCLVRYLPQYYVDPSKS------RNANRLALRRIYLEAGA 256          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: K3WMJ8_GLOUD (PlsC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMJ8_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 4.100e-16
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   28 GNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGPSR---ADMAVVVRNRLQASLEDIPVTAGAPLTWCGRLANVGAVLATYVLTWR 390
            GNSV ++PEGTRSK G LQ FKKG F+L+E     V+P +V GA+EL PP     L G+ ++RYLP   + PS+    +   + R  L+A  ED+P   G      G L NV  +   + +T++
Sbjct:  258 GNSVCISPEGTRSKDGLLQEFKKGPFYLREDTKKNVVPAIVYGAYELWPPGRLITLPGKALVRYLPEYVADPSKNRNLNRLALRRIYLKAFAEDVPEDIGTAADANGILRNVVGIYLIWAVTFK 381          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A835YU14_9STRA (PlsC domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU14_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.420e-15
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   22 RSGNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAA-----FPLSGQVVLRYLPAIQSG 240
            R G S+AV+PEGTRS+TGQL+PFKKGAFHL +QL WP+LP+ + GAF L PP AA     +   G V +RY   I+ G
Sbjct:  136 RVGYSLAVSPEGTRSRTGQLRPFKKGAFHLAQQLRWPMLPLTIHGAFALWPPRAARAGALYARPGTVGVRYHALIRVG 213          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A6A4EQS8_9STRA (PlsC domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EQS8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-15
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   28 GNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGPS---RADMAVVVRNRLQASLEDIPVTAGAPLTWCGRLANVGAVLATYVLTWR---WGAAASSVGLRALGLT 438
            GNSV ++PEGTRSK G LQ FKKG F+L+E     V+P +V GA+EL PP   F + G  ++RYLP  +S P+     +   + R  L+A  EDIP   G  ++    + NV      + +T++   W  AA S    AL +T
Sbjct:  257 GNSVCISPEGTRSKDGLLQEFKKGPFYLREDTKKNVVPSIVFGAYELWPPGRLFSIPGHTLVRYLPEYKSDPNLNRNQNRLALRRIYLKAFTEDIPDYIGTRVSTNFIVKNVFYHYLAWAITYKVTAWAFAAISFVCYALNIT 399          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A484DWP7_BRELC (PlsC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWP7_BRELC)

HSP 1 Score: 82.0 bits (201), Expect = 3.730e-15
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   28 GNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGPS---RADMAVVVRNRLQASLEDIPVTAGAPLTWCGRLANVGAVLATYVLTWR 390
            GNSV ++PEGTRSK G LQ FKKG F+L+E+    V+P +V GAFEL PP   F + G  ++RYLP  +S PS     +   + R  L+A  +DIP   G  ++    L N+     ++ +T++
Sbjct:  259 GNSVCISPEGTRSKDGLLQEFKKGPFYLREETKKNVVPSIVFGAFELWPPGRLFSIPGHTLVRYLPEYKSDPSLNRNQNRLALRRIYLKAFTQDIPDFIGTRVSTSYILKNMFYHYLSWAITFK 382          
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Match: A0A067BW40_SAPPC (PlsC domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW40_SAPPC)

HSP 1 Score: 82.0 bits (201), Expect = 3.900e-15
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   28 GNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVVQGAFELCPPCAAFPLSGQVVLRYLPAIQSGPSRADMAVVVRNRLQASLEDIPVTAGA 321
            G SVA++PEGTRSK+G LQ FKKG F+LQ     P+ P +V GA+EL PP   F L G+ ++RYLP     P+++      RN  + +L  I + AGA
Sbjct:  273 GRSVAISPEGTRSKSGLLQDFKKGPFYLQSDAGAPITPAIVIGAYELWPPARIFTLPGKCLVRYLPQYHVDPAKS------RNANRLALRRIYLEAGA 364          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8712.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9D1W3_9STRA5.830e-2137.57PlsC domain-containing protein n=2 Tax=Monodopsida... [more]
D8LSD1_ECTSI2.260e-1846.721-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
K8Z342_NANGC3.190e-1842.861-acyl-sn-glycerol-3-phosphate acyltransferase (Fr... [more]
A0A662XYM7_9STRA1.340e-1640.32PlsC domain-containing protein n=1 Tax=Nothophytop... [more]
A0A1V9ZV14_9STRA2.980e-1647.96PlsC domain-containing protein n=1 Tax=Thraustothe... [more]
K3WMJ8_GLOUD4.100e-1640.32PlsC domain-containing protein n=1 Tax=Globisporan... [more]
A0A835YU14_9STRA1.420e-1556.41PlsC domain-containing protein n=2 Tax=Tribonema m... [more]
A0A6A4EQS8_9STRA3.700e-1539.16PlsC domain-containing protein n=3 Tax=Phytophthor... [more]
A0A484DWP7_BRELC3.730e-1540.32PlsC domain-containing protein n=1 Tax=Bremia lact... [more]
A0A067BW40_SAPPC3.900e-1545.92PlsC domain-containing protein n=3 Tax=Saprolegnia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8712contigP-wetherbeei_contig8712:1934..2722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSD1
PFAMsAcyltransferase,DNA_pol_A_exo1,PPR_2
Model size513
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.7e-19
EggNOG OGsCOG0204@1|root,KOG2848@2759|Eukaryota
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-21_003240.1
EC2.3.1.51
Description1-acylglycerol-3-phosphate O-acyltransferase activity
Cds size513
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187055.7239938-CDS-P-wetherbeei_contig8712:1933..22421683187055.7239938-CDS-P-wetherbeei_contig8712:1933..2242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8712 1934..2242 -
1683187055.7362416-CDS-P-wetherbeei_contig8712:2518..27221683187055.7362416-CDS-P-wetherbeei_contig8712:2518..2722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8712 2519..2722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8712.2.1prot_P-wetherbeei_contig8712.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8712 1934..2722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8712.2.1

>prot_P-wetherbeei_contig8712.2.1 ID=prot_P-wetherbeei_contig8712.2.1|Name=mRNA_P-wetherbeei_contig8712.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
GVVAHAARSGNSVAVAPEGTRSKTGQLQPFKKGAFHLQEQLAWPVLPVVV
QGAFELCPPCAAFPLSGQVVLRYLPAIQSGPSRADMAVVVRNRLQASLED
IPVTAGAPLTWCGRLANVGAVLATYVLTWRWGAAASSVGLRALGLTPAAA
AMAFAAYVVAMTMIIRVGYCK
back to top

mRNA from alignment at P-wetherbeei_contig8712:1934..2722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8712.2.1 ID=mRNA_P-wetherbeei_contig8712.2.1|Name=mRNA_P-wetherbeei_contig8712.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig8712:1934..2722- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGTCGCCCATGCCGCGCGCAGCGGCAACTCGGTGGCGGTGGCGCC CGAGGGGACACGGAGCAAGACGGGGCAGCTGCAGCCGTTCAAGAAGGGCG CATTCCACCTGCAAGAACAGCTGGCGTGGCCCGTGCTGCCGGTGGTAGTT CAGGGCGCCTTTGAGCTGTGCCCGCCGTGCGCCGCCTTTCCGCTCTCCGG CCAGGTGAGTATTGACCAGAGCAGGAAAGGGAAAAGGAAAGACCTGAGCG GATCTGAACGAATTGTTTTCTTGACAGCAGCGCAGCCGTCGTTGCGGCGC CGGCAACTTTGGGACCATTCTGTTTTCCCTTTGCAGGTGCTTTCCTCTGC GCATTCCCGTTGGCTACCCTCTAACGTTCTTTTTAGTTTTTCTTTGTTCG CCGTGCCAGGCACGACCTTAAATCGCTGCAGTCTCTAGACCTCCGCGATA CGCCGGCCCACGTTTCTCATTTGCTGGCAGGTGGTGCTTCGCTACCTCCC GGCCATCCAATCGGGCCCCTCCCGCGCCGACATGGCGGTGGTGGTGCGCA ACCGCCTGCAGGCCTCCCTTGAGGACATCCCCGTCACCGCTGGCGCTCCC CTGACGTGGTGCGGCCGCCTCGCCAACGTCGGCGCCGTCCTCGCGACCTA CGTGCTCACCTGGCGCTGGGGTGCCGCTGCGTCGTCGGTCGGGCTGCGGG CGCTGGGGCTCACGCCGGCCGCGGCGGCAATGGCGTTCGCGGCGTACGTG GTCGCCATGACCATGATCATCCGCGTCGGATACTGCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8712:1934..2722-

>mRNA_P-wetherbeei_contig8712.2.1 ID=mRNA_P-wetherbeei_contig8712.2.1|Name=mRNA_P-wetherbeei_contig8712.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig8712:1934..2722- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGTCGCCCATGCCGCGCGCAGCGGCAACTCGGTGGCGGTGGCGCC
CGAGGGGACACGGAGCAAGACGGGGCAGCTGCAGCCGTTCAAGAAGGGCG
CATTCCACCTGCAAGAACAGCTGGCGTGGCCCGTGCTGCCGGTGGTAGTT
CAGGGCGCCTTTGAGCTGTGCCCGCCGTGCGCCGCCTTTCCGCTCTCCGG
CCAGGTGGTGCTTCGCTACCTCCCGGCCATCCAATCGGGCCCCTCCCGCG
CCGACATGGCGGTGGTGGTGCGCAACCGCCTGCAGGCCTCCCTTGAGGAC
ATCCCCGTCACCGCTGGCGCTCCCCTGACGTGGTGCGGCCGCCTCGCCAA
CGTCGGCGCCGTCCTCGCGACCTACGTGCTCACCTGGCGCTGGGGTGCCG
CTGCGTCGTCGGTCGGGCTGCGGGCGCTGGGGCTCACGCCGGCCGCGGCG
GCAATGGCGTTCGCGGCGTACGTGGTCGCCATGACCATGATCATCCGCGT
CGGATACTGCAAG
back to top