mRNA_P-wetherbeei_contig8712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8712.1.1
Unique NamemRNA_P-wetherbeei_contig8712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 3.030e-77
Identity = 116/177 (65.54%), Postives = 135/177 (76.27%), Query Frame = 1
Query:    1 QVQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEKRRRAFWD 531
            +VQYCQG+NYI +LFLLYMPEE AFW LV  MNRP AP+RELFLPGM+ AQEFQ VMDSL  K+  +L  QI    LTP+MYATQWFLT FTQRFPY+ VTRVWD+FLLEDWKV YRVCLALF+  E   A +++E +NL LR++P  VD   +L +A SI LKHRHI KR   F D
Sbjct:  124 EVQYCQGVNYITSLFLLYMPEENAFWMLVATMNRPCAPLRELFLPGMLKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFKSVEGKAAALDLENLNLLLRNMPPNVDAQQILDIAASIPLKHRHIGKRVALFGD 300          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 4.130e-73
Identity = 117/177 (66.10%), Postives = 135/177 (76.27%), Query Frame = 1
Query:    1 QVQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEKRRRAFWD 531
            +VQYCQGINYI +LFLLYMPEE AFW LV  MNRP AP+RELFLPGM+ AQEFQ VMDSL  K+  +L  QI    LTP+MYATQWFLT FTQRFPY+ VTRVWD+FLLEDWKV YRVCLALF+  E   A +++E +NL LR++P  VD   +L +A SI LKHRHI KR   F D
Sbjct:  477 EVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFKSVEGKAAALDLENLNLLLRNMPPNVDAQQILDIAASIPLKHRHIAKRVALFSD 653          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 225 bits (573), Expect = 4.600e-67
Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 1
Query:   19 GINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEKRRRAF 525
            GINYI ALFLLYMPEEEAFW LVCVM+RP AP+RELFLPGM+ A+EF HVMDSL +K+VP+L R +    + P+MYA  WF+T FTQ FPYE  TR WDVFL EDWK+MYRVCLALF+  E  V  +++E  NL +R LP A DG  +L +A  I LKH+HI KR R F
Sbjct:  466 GINYIAALFLLYMPEEEAFWMLVCVMHRPQAPLRELFLPGMLKAREFNHVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFKHVETEVCSLDLEQGNLVMRRLPAAADGKTILDLAMRIPLKHKHIAKRIRQF 634          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A485LF29_9STRA (Aste57867_20420 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF29_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.200e-47
Identity = 79/174 (45.40%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    4 VQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEKRRRAF 525
            V YCQG+ +I ALFL YMPEE+ FW LV  +N+    M +++ PGM  A E   + +     Y+P+L   +   GL P+MYATQWF+T ++  FP+EFVTRVWD+FL E WK++YR+ +AL +++E  + GM+ E +  Y RDLPT+VD   VLA A  I + +R + + R A+
Sbjct:  445 VGYCQGMGFISALFLSYMPEEQTFWHLVACLNQKKYGMADIYRPGMPRAAEIMSIFEQCTKTYLPKLTEHMDAEGLHPTMYATQWFITLYSYSFPFEFVTRVWDIFLHEGWKIVYRIAIALLKVSEKTLTGMKFEKIMEYFRDLPTSVDTAEVLATAIDIPMTNRQLTQMREAY 618          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A7S2KF21_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KF21_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.390e-46
Identity = 82/177 (46.33%), Postives = 111/177 (62.71%), Query Frame = 1
Query:    1 QVQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEKRRRAFWD 531
            +V YCQG+ +I  +FL YMPEE+AFWQLV VMN     +R+LF  GM  AQ+  +V D L  K +P+L +      +  SM+ATQW +T +T  FP++ VTRVWD FL E WKV+YRV LAL + + P +  M  E +  Y R LP  VDG A++ VAF I LK   I++  + + D
Sbjct:  206 EVGYCQGMGFIAGMFLTYMPEEQAFWQLVGVMNEEPCNLRDLFSVGMAGAQQVLYVADKLTRKVLPKLAKHFDRENVHISMFATQWLVTIYTSNFPFDLVTRVWDCFLYEGWKVVYRVMLALLKDSSPKLLKMNFESILSYFRTLPEQVDGLAIMTVAFEIPLKRTFIQQYEKEWKD 382          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A024UR51_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UR51_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.570e-44
Identity = 74/167 (44.31%), Postives = 107/167 (64.07%), Query Frame = 1
Query:    4 VQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHI 504
            V YCQG+ +I ALFL YMPEE+ FW +V  +N+    M +++ PGM    E   + +     YVP+L   +   GL P+MYATQWF+T ++  FP+EFVTRVWD++L E WK++YRV +AL +++E  + G + E +  + RDLPT+VD   VLA A  I +  R +
Sbjct:  198 VGYCQGMGFISALFLSYMPEEQTFWHVVACLNQKKYGMADIYRPGMPRVMEIMWIFEQSMKLYVPKLTDHLAAEGLHPTMYATQWFVTLYSYSFPFEFVTRVWDIYLHEGWKIVYRVAVALLKVSEKVLLGAKFEKIMEFFRDLPTSVDTTEVLAAALEIPMTTRQL 364          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A024FZL6_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024FZL6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.660e-44
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    4 VQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEKRRRAF 525
            V YCQG+ ++ A+FL Y+PEE++FW LV  +N     +  ++ PGM    E   V + L   Y+PR+   +   GL P+ Y +QWF+T FT  FP+ FVTRVWD+FLLE WK++YRV LAL ++++  +  ++ E +  + RDLPT V  + VLAVAFSI +K   +E+ R  +
Sbjct:  183 VGYCQGMAFLSAMFLSYIPEEQSFWHLVACLNHKRYDLANIYRPGMPKVGELVFVFERLMALYIPRVAVHLREEGLHPTTYLSQWFITLFTYSFPFNFVTRVWDIFLLEGWKIIYRVALALIKISQKQLLSIQFESIMEFFRDLPTTVQIEEVLAVAFSIPIKRHQLERIREEY 356          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.970e-44
Identity = 77/168 (45.83%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    1 QVQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHI 504
            +V YCQG+ ++ A+FL YMPE++AFW LV  +N     + +L+ P M    E   V + L  + +P+L   +   GL P+MY TQWFLT FT  FP+EFVTRVWD FL E WKV+YRV LAL ++++  +   + E +  Y RDLP  VD D VL VAF + +K   I
Sbjct:  148 EVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDTFLHEGWKVIYRVALALMKISQKTLLSSKFEIIMEYFRDLPNKVDTDEVLTVAFRMPIKRAQI 315          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A7S4HJ54_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJ54_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.420e-44
Identity = 77/169 (45.56%), Postives = 103/169 (60.95%), Query Frame = 1
Query:    4 VQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIEK 510
            V YCQG+N+I A+FL +M EEEAFW LV VMN     MR LF  GM  A    HV + L  +++P+L   +    +  +MY TQW LT +   FP++ VTRVWD FL E WK+++RV LA+   A P +  +  E +  Y R+LP  +DGDA L  +  I L+ RHIEK
Sbjct:   74 VGYCQGMNFIAAMFLTFMSEEEAFWLLVHVMNEEPCRMRGLFGEGMAHAHRVLHVAEGLIRQFLPKLAGHLERENVHVTMYVTQWLLTLYASSFPFDLVTRVWDCFLAEGWKIVFRVMLAILDRASPDLMRLRFEEILGYFRELPGKIDGDATLDASLKIPLRRRHIEK 242          
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Match: A0A3F2RLQ9_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLQ9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 8.170e-44
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 1
Query:    1 QVQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAAQEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFVTRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVDGDAVLAVAFSIRLKHRHIE 507
            +V YCQG+ ++ A+FL YMPE++AFW LV  +N     + +L+ P M    E   V + L  + +P+L   +   GL P+MY TQWFLT FT  FP+EFVTRVWD FL E WK+++RV LAL + ++  +   + E +  Y R+LP  VD + VLAVAF + +K   IE
Sbjct:  210 EVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKIIFRVALALLKTSQKTLLSSKFEAIMEYFRELPNRVDAEEVLAVAFRVSIKREQIE 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5V3_ECTSI3.030e-7765.54GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5L2H2_9PHAE4.130e-7366.10Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835YV67_9STRA4.600e-6763.31Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A485LF29_9STRA2.200e-4745.40Aste57867_20420 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2KF21_9STRA3.390e-4646.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A024UR51_9STRA1.570e-4444.31Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
A0A024FZL6_9STRA1.660e-4443.10Rab-GAP TBC domain-containing protein n=2 Tax=Albu... [more]
A0A8J5IBD6_9STRA3.970e-4445.83Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A7S4HJ54_9STRA6.420e-4445.56Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A3F2RLQ9_9STRA8.170e-4444.38Rab-GAP TBC domain-containing protein n=3 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8712contigP-wetherbeei_contig8712:285..815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5V3
PFAMsRabGAP-TBC
Model size531
Max annot lvl2759|Eukaryota
KEGG koko:K19944,ko:K20133
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.96e-78
EggNOG OGsCOG5210@1|root,KOG1102@2759|Eukaryota
Descriptionregulation of vesicle fusion
Cds size531
COG categoryK
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187055.685173-CDS-P-wetherbeei_contig8712:284..8151683187055.685173-CDS-P-wetherbeei_contig8712:284..815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8712 285..815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8712.1.1prot_P-wetherbeei_contig8712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8712 285..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8712.1.1

>prot_P-wetherbeei_contig8712.1.1 ID=prot_P-wetherbeei_contig8712.1.1|Name=mRNA_P-wetherbeei_contig8712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
QVQYCQGINYICALFLLYMPEEEAFWQLVCVMNRPAAPMRELFLPGMVAA
QEFQHVMDSLADKYVPRLCRQIGGFGLTPSMYATQWFLTGFTQRFPYEFV
TRVWDVFLLEDWKVMYRVCLALFRMAEPAVAGMEIEPMNLYLRDLPTAVD
GDAVLAVAFSIRLKHRHIEKRRRAFWD
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mRNA from alignment at P-wetherbeei_contig8712:285..815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8712.1.1 ID=mRNA_P-wetherbeei_contig8712.1.1|Name=mRNA_P-wetherbeei_contig8712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig8712:285..815+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCAGTACTGCCAGGGGATCAACTACATCTGCGCGCTCTTCCTGCT GTACATGCCCGAGGAGGAGGCCTTCTGGCAGCTCGTCTGCGTCATGAACC GTCCCGCCGCGCCCATGCGCGAGCTCTTTTTGCCCGGCATGGTCGCGGCC CAGGAGTTCCAGCACGTCATGGACTCGCTGGCCGACAAGTACGTGCCGCG CCTCTGCCGGCAGATCGGCGGTTTCGGGCTGACGCCCTCCATGTACGCGA CGCAGTGGTTCCTGACAGGCTTCACGCAGCGCTTCCCCTACGAGTTTGTG ACGCGCGTGTGGGACGTCTTCCTGTTGGAGGACTGGAAGGTCATGTACCG CGTCTGCCTAGCGCTCTTTCGCATGGCGGAGCCCGCCGTCGCCGGCATGG AGATTGAGCCGATGAACCTCTACCTTCGGGACCTCCCGACGGCCGTAGAC GGCGATGCTGTGCTCGCCGTGGCCTTTTCGATCCGGCTTAAGCACCGTCA TATCGAGAAGCGCCGCCGCGCCTTCTGGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8712:285..815+

>mRNA_P-wetherbeei_contig8712.1.1 ID=mRNA_P-wetherbeei_contig8712.1.1|Name=mRNA_P-wetherbeei_contig8712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig8712:285..815+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCAGTACTGCCAGGGGATCAACTACATCTGCGCGCTCTTCCTGCT
GTACATGCCCGAGGAGGAGGCCTTCTGGCAGCTCGTCTGCGTCATGAACC
GTCCCGCCGCGCCCATGCGCGAGCTCTTTTTGCCCGGCATGGTCGCGGCC
CAGGAGTTCCAGCACGTCATGGACTCGCTGGCCGACAAGTACGTGCCGCG
CCTCTGCCGGCAGATCGGCGGTTTCGGGCTGACGCCCTCCATGTACGCGA
CGCAGTGGTTCCTGACAGGCTTCACGCAGCGCTTCCCCTACGAGTTTGTG
ACGCGCGTGTGGGACGTCTTCCTGTTGGAGGACTGGAAGGTCATGTACCG
CGTCTGCCTAGCGCTCTTTCGCATGGCGGAGCCCGCCGTCGCCGGCATGG
AGATTGAGCCGATGAACCTCTACCTTCGGGACCTCCCGACGGCCGTAGAC
GGCGATGCTGTGCTCGCCGTGGCCTTTTCGATCCGGCTTAAGCACCGTCA
TATCGAGAAGCGCCGCCGCGCCTTCTGGGAT
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