mRNA_P-wetherbeei_contig862.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig862.2.1
Unique NamemRNA_P-wetherbeei_contig862.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig862.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig862contigP-wetherbeei_contig862:6448..7097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size535
Hectar predicted targeting categoryother localisation
Exons2
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187050.4946442-CDS-P-wetherbeei_contig862:6449..66951683187050.4946442-CDS-P-wetherbeei_contig862:6449..6695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig862 6450..6695 -
1683187050.5094178-CDS-P-wetherbeei_contig862:6812..70971683187050.5094178-CDS-P-wetherbeei_contig862:6812..7097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig862 6813..7097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig862.2.1prot_P-wetherbeei_contig862.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig862 6450..7097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig862.2.1

>prot_P-wetherbeei_contig862.2.1 ID=prot_P-wetherbeei_contig862.2.1|Name=mRNA_P-wetherbeei_contig862.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
DGSAATAIAPAARGRLPSDWTDSPSEASPSREAGLSRSWADAAVVAGLTD
AVASMKAAPGDAGLQERGLRIVAGTPPASDRALRGLVAMGIVDIVVSAFA
IHPTEPGVTVAAADTIVALCRSGMRARERLGSSGACKAIVRAMLRLNSNS
WVQQACCMAVAALFRAPPQTTRAVAAL
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mRNA from alignment at P-wetherbeei_contig862:6448..7097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig862.2.1 ID=mRNA_P-wetherbeei_contig862.2.1|Name=mRNA_P-wetherbeei_contig862.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=650bp|location=Sequence derived from alignment at P-wetherbeei_contig862:6448..7097- (Phaeothamnion wetherbeei SAG_119_79)
GACGGTTCCGCTGCCACCGCCATCGCTCCAGCCGCACGGGGACGCCTGCC
GTCCGACTGGACCGACTCCCCGTCGGAAGCGTCTCCGTCCCGAGAGGCGG
GGCTATCGCGGTCTTGGGCGGACGCGGCCGTCGTGGCGGGCCTGACGGAC
GCGGTGGCGTCCATGAAGGCGGCGCCGGGCGACGCGGGCCTGCAGGAGCG
GGGCCTGCGGATCGTCGCCGGCACGCCGCCGGCCAGCGACAGGGCGCTGC
GGGGCCTCGTCGCCATGGGCATCGTCGACATTGTGGTGAGCGCATGAAAT
TGAATCGGTCGTGCAGCGGAAGCCTTGATTGCCAAGAACGTCTTCTCGAG
ATTTTTCGGCTAACGTTTTGCTTGATTTTCTTCGGCCATTTCGGCATTCC
AGGTGAGCGCCTTTGCCATCCACCCGACCGAGCCGGGAGTCACCGTCGCC
GCCGCGGACACCATTGTGGCCCTCTGCCGCTCCGGCATGCGGGCGCGGGA
GCGGCTCGGGAGCAGCGGCGCCTGCAAGGCCATCGTTCGTGCCATGCTGC
GGCTGAACAGTAACAGCTGGGTGCAGCAGGCATGCTGCATGGCTGTGGCG
GCGCTCTTTCGGGCGCCGCCGCAGACGACCCGGGCGGTGGCGGCGCTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig862:6448..7097-

>mRNA_P-wetherbeei_contig862.2.1 ID=mRNA_P-wetherbeei_contig862.2.1|Name=mRNA_P-wetherbeei_contig862.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig862:6448..7097- (Phaeothamnion wetherbeei SAG_119_79)
GACGGTTCCGCTGCCACCGCCATCGCTCCAGCCGCACGGGGACGCCTGCC
GTCCGACTGGACCGACTCCCCGTCGGAAGCGTCTCCGTCCCGAGAGGCGG
GGCTATCGCGGTCTTGGGCGGACGCGGCCGTCGTGGCGGGCCTGACGGAC
GCGGTGGCGTCCATGAAGGCGGCGCCGGGCGACGCGGGCCTGCAGGAGCG
GGGCCTGCGGATCGTCGCCGGCACGCCGCCGGCCAGCGACAGGGCGCTGC
GGGGCCTCGTCGCCATGGGCATCGTCGACATTGTGGTGAGCGCCTTTGCC
ATCCACCCGACCGAGCCGGGAGTCACCGTCGCCGCCGCGGACACCATTGT
GGCCCTCTGCCGCTCCGGCATGCGGGCGCGGGAGCGGCTCGGGAGCAGCG
GCGCCTGCAAGGCCATCGTTCGTGCCATGCTGCGGCTGAACAGTAACAGC
TGGGTGCAGCAGGCATGCTGCATGGCTGTGGCGGCGCTCTTTCGGGCGCC
GCCGCAGACGACCCGGGCGGTGGCGGCGCTG
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