mRNA_P-wetherbeei_contig8604.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8604.2.1
Unique NamemRNA_P-wetherbeei_contig8604.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8604.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8604contigP-wetherbeei_contig8604:1133..1615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.652281-UTR-P-wetherbeei_contig8604:1132..11681683187049.652281-UTR-P-wetherbeei_contig8604:1132..1168Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8604 1133..1168 -
1683187049.6687303-UTR-P-wetherbeei_contig8604:1570..16151683187049.6687303-UTR-P-wetherbeei_contig8604:1570..1615Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8604 1571..1615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.6608129-CDS-P-wetherbeei_contig8604:1168..15701683187049.6608129-CDS-P-wetherbeei_contig8604:1168..1570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8604 1169..1570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8604.2.1prot_P-wetherbeei_contig8604.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8604 1169..1570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8604.2.1

>prot_P-wetherbeei_contig8604.2.1 ID=prot_P-wetherbeei_contig8604.2.1|Name=mRNA_P-wetherbeei_contig8604.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MSLVAYSESDESGGEGEKKAEAKKEVHAPKASSLPSLNDLFSTPGAPGGL
LPASGSAAKRKAEAVSPASTANAPQAKKTTATPTLMRPPQVNSKLGVNCV
TEEPADWSRRRKSAEAKAKEAGATPAKGQKSKR*
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mRNA from alignment at P-wetherbeei_contig8604:1133..1615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8604.2.1 ID=mRNA_P-wetherbeei_contig8604.2.1|Name=mRNA_P-wetherbeei_contig8604.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig8604:1133..1615- (Phaeothamnion wetherbeei SAG_119_79)
AAGAGTAGCAGCAGCGCGCTTTCTTTACCGCTAGTCTGTGCTACAATGTC
GCTCGTTGCGTACAGCGAGAGCGACGAATCGGGGGGTGAAGGAGAGAAGA
AAGCGGAAGCGAAGAAGGAGGTGCACGCACCGAAAGCGTCCTCACTGCCG
TCTCTGAATGACCTCTTCTCTACGCCAGGAGCACCAGGAGGTTTGCTGCC
AGCATCCGGAAGCGCTGCAAAGAGGAAGGCTGAGGCGGTATCGCCTGCGT
CAACAGCCAACGCGCCTCAAGCGAAGAAAACGACTGCAACGCCGACATTG
ATGAGACCACCGCAGGTAAACTCCAAGCTTGGCGTGAACTGCGTAACGGA
AGAGCCTGCGGACTGGTCGAGACGACGAAAGTCTGCTGAAGCGAAGGCGA
AGGAGGCGGGAGCGACGCCCGCAAAGGGCCAGAAGAGTAAGAGATGATCA
TTGCTCAGACGTAAAAACGAAGGAAAATGCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8604:1133..1615-

>mRNA_P-wetherbeei_contig8604.2.1 ID=mRNA_P-wetherbeei_contig8604.2.1|Name=mRNA_P-wetherbeei_contig8604.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig8604:1133..1615- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTCGTTGCGTACAGCGAGAGCGACGAATCGGGGGGTGAAGGAGA
GAAGAAAGCGGAAGCGAAGAAGGAGGTGCACGCACCGAAAGCGTCCTCAC
TGCCGTCTCTGAATGACCTCTTCTCTACGCCAGGAGCACCAGGAGGTTTG
CTGCCAGCATCCGGAAGCGCTGCAAAGAGGAAGGCTGAGGCGGTATCGCC
TGCGTCAACAGCCAACGCGCCTCAAGCGAAGAAAACGACTGCAACGCCGA
CATTGATGAGACCACCGCAGGTAAACTCCAAGCTTGGCGTGAACTGCGTA
ACGGAAGAGCCTGCGGACTGGTCGAGACGACGAAAGTCTGCTGAAGCGAA
GGCGAAGGAGGCGGGAGCGACGCCCGCAAAGGGCCAGAAGAGTAAGAGAT
GA
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