mRNA_P-wetherbeei_contig826.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig826.4.1
Unique NamemRNA_P-wetherbeei_contig826.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig826.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig826contigP-wetherbeei_contig826:6837..8667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1321
Hectar predicted targeting categoryother localisation
Exons4
Cds size915
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.875314-UTR-P-wetherbeei_contig826:6836..72401683187029.875314-UTR-P-wetherbeei_contig826:6836..7240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig826 6837..7240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.884279-CDS-P-wetherbeei_contig826:7240..75561683187029.884279-CDS-P-wetherbeei_contig826:7240..7556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 7241..7556 +
1683187029.8924487-CDS-P-wetherbeei_contig826:7710..80121683187029.8924487-CDS-P-wetherbeei_contig826:7710..8012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 7711..8012 +
1683187029.900354-CDS-P-wetherbeei_contig826:8242..83101683187029.900354-CDS-P-wetherbeei_contig826:8242..8310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 8243..8310 +
1683187029.9082818-CDS-P-wetherbeei_contig826:8438..86671683187029.9082818-CDS-P-wetherbeei_contig826:8438..8667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig826 8439..8667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig826.4.1prot_P-wetherbeei_contig826.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig826 7241..8667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig826.4.1

>prot_P-wetherbeei_contig826.4.1 ID=prot_P-wetherbeei_contig826.4.1|Name=mRNA_P-wetherbeei_contig826.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=305bp
MCHAWRVLLLILDGGSPLACVHDADAASGDGDSHRHRNQAVTAGSSSGAG
GDRTGGGSGGGGARGDVVGDISNTNLGGAAGTAEATWWAAGSSVGDATSG
TDREGGGDLSAPESWVLLEEDRRPQEGPEKQPGEGGQQLLPSSLALQSEA
GTGTGGGGGGSVIAGNGEDGGDSKEGDGCAAAATADPQGAVPLAWLWKGV
VADLLQDLANVGDVQHAVAICEVLCDWRKRRSDIGDPADPWTPDPAAWAG
ASSGNGGSSAAVASAAAAAAAGGSPDADEERTRRRWLALGLEPGLVREWY
VTYVD
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mRNA from alignment at P-wetherbeei_contig826:6837..8667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig826.4.1 ID=mRNA_P-wetherbeei_contig826.4.1|Name=mRNA_P-wetherbeei_contig826.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1831bp|location=Sequence derived from alignment at P-wetherbeei_contig826:6837..8667+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGTTGACACGGACGCTGACGGGCTTCACGGTCGAAGACGTCTTCGG
CTACGATCCGGCTGTCGTCCGATATCTCGCAGAAGGGTTAGGCTCTTTCT
TCCAATACGCGACTTTTGCGCGCGGCATTGCAGCTTGCTGGCCTGCGGAC
GAAGCTGCTGCATCGGAGTTTTGCGGAGACAATGGCGTATGGTGACAGAT
CTTTCCGGCTCATGAGTTCTCAAGCGATTCCGTCTGCTCCCGCAAATATG
TCACCATCCTTTGCGCCTGCTCTACCGCTGTCTGAACCCGTTGTTCCCGT
GGCCTCATTGTCGCTTCCCCTCCAGGTACGTCTTGCGGGGCTCGCCGGTA
GGTGAGCTGTGCGCCCACAACGCTGCCGTGGCGCTGGCCTGCGGCCGCGT
CAGCATGTGTCACGCCTGGCGCGTTTTGCTGCTCATTTTGGACGGCGGCT
CGCCCCTGGCGTGCGTTCACGACGCCGACGCCGCCTCAGGTGACGGAGAC
TCCCACCGCCATCGCAACCAGGCGGTGACTGCCGGAAGCAGCAGTGGAGC
GGGTGGCGACCGCACCGGCGGCGGCAGCGGGGGCGGCGGCGCCAGGGGCG
ATGTAGTGGGAGACATCAGCAATACTAACCTCGGTGGCGCTGCTGGAACA
GCCGAAGCGACCTGGTGGGCTGCGGGGTCGAGTGTTGGCGATGCAACGTC
GGGAACCGATCGGGAAGGAGGTAGGCTCCTTCCTCTTGGAATGGCCACTC
GCAGAGGCTCACTATTTTCTACGGGCTGGCTGCGGCATCGGTTCTCTGCA
TGCTGCTTATTGCCCCCGGATTCTTAGATCGACCCCTTGCTTGAGTTGCC
GCCTGATTGCTGCGTTTCCTGTAGGCGGCGATTTGTCGGCGCCGGAGTCG
TGGGTGCTCCTGGAAGAGGACCGGCGGCCGCAAGAAGGCCCTGAAAAGCA
GCCCGGCGAGGGCGGGCAACAACTGCTACCGTCATCGTTGGCGTTGCAGA
GTGAAGCGGGAACTGGAACGGGCGGAGGTGGCGGCGGCAGTGTAATCGCC
GGCAATGGGGAGGATGGCGGCGACAGCAAGGAGGGCGACGGCTGCGCTGC
TGCGGCGACAGCTGATCCTCAGGGCGCGGTTCCGCTTGCATGGCTGTGGA
AAGGCGTCGTGGCGGACTTGCTGCAGGTTAGGCGAGGCATTGCAGACTTG
GGGAGGAAGGGACGGAATGGCCCATTTTGTTGTCTTGTGAAAGCTCTCTT
CCTGTGCTACCGCGTTGTACGCTGAGGTACGTTGAGTTCTCTGCCGGTAC
AGCTTTGATTTTGAGCACTTCGATCTATGGCGTTTGACAATTTCCAATTG
TCTTTTCATCGTCATTTCTTCCTCTCCGCCACCTCCGCTGCCGACTCTTT
TTGTAGGATTTGGCAAACGTTGGCGATGTGCAGCATGCCGTCGCCATCTG
CGAGGTCCTCTGCGACTGGCGAAAGTGAGCGTGGCCTTCAAAAACTACAA
TCTAGCTCCGTTTCCTTTTTCCTTTCCTTCAGCATTCTCTGACTTTCCGT
TGTTTCTTTGGTGTTTCCACCTTCCCCGCGCCGGGTACGCAATAAATTGC
AGGCGGCGAAGCGACATTGGCGATCCCGCTGACCCCTGGACTCCCGATCC
CGCTGCTTGGGCCGGGGCCAGCAGCGGAAACGGTGGCAGCAGCGCTGCTG
TCGCCAGCGCCGCCGCCGCTGCCGCCGCGGGAGGGTCTCCCGACGCCGAC
GAGGAGCGGACGCGGCGGCGGTGGTTGGCCCTGGGGCTGGAGCCGGGGCT
GGTGCGTGAGTGGTACGTGACGTACGTTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig826:6837..8667+

>mRNA_P-wetherbeei_contig826.4.1 ID=mRNA_P-wetherbeei_contig826.4.1|Name=mRNA_P-wetherbeei_contig826.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig826:6837..8667+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTCACGCCTGGCGCGTTTTGCTGCTCATTTTGGACGGCGGCTCGCC
CCTGGCGTGCGTTCACGACGCCGACGCCGCCTCAGGTGACGGAGACTCCC
ACCGCCATCGCAACCAGGCGGTGACTGCCGGAAGCAGCAGTGGAGCGGGT
GGCGACCGCACCGGCGGCGGCAGCGGGGGCGGCGGCGCCAGGGGCGATGT
AGTGGGAGACATCAGCAATACTAACCTCGGTGGCGCTGCTGGAACAGCCG
AAGCGACCTGGTGGGCTGCGGGGTCGAGTGTTGGCGATGCAACGTCGGGA
ACCGATCGGGAAGGAGGCGGCGATTTGTCGGCGCCGGAGTCGTGGGTGCT
CCTGGAAGAGGACCGGCGGCCGCAAGAAGGCCCTGAAAAGCAGCCCGGCG
AGGGCGGGCAACAACTGCTACCGTCATCGTTGGCGTTGCAGAGTGAAGCG
GGAACTGGAACGGGCGGAGGTGGCGGCGGCAGTGTAATCGCCGGCAATGG
GGAGGATGGCGGCGACAGCAAGGAGGGCGACGGCTGCGCTGCTGCGGCGA
CAGCTGATCCTCAGGGCGCGGTTCCGCTTGCATGGCTGTGGAAAGGCGTC
GTGGCGGACTTGCTGCAGGATTTGGCAAACGTTGGCGATGTGCAGCATGC
CGTCGCCATCTGCGAGGTCCTCTGCGACTGGCGAAAGCGGCGAAGCGACA
TTGGCGATCCCGCTGACCCCTGGACTCCCGATCCCGCTGCTTGGGCCGGG
GCCAGCAGCGGAAACGGTGGCAGCAGCGCTGCTGTCGCCAGCGCCGCCGC
CGCTGCCGCCGCGGGAGGGTCTCCCGACGCCGACGAGGAGCGGACGCGGC
GGCGGTGGTTGGCCCTGGGGCTGGAGCCGGGGCTGGTGCGTGAGTGGTAC
GTGACGTACGTTGAC
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