mRNA_P-wetherbeei_contig824.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig824.2.1
Unique NamemRNA_P-wetherbeei_contig824.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig824.2.1 vs. uniprot
Match: A0A6H5JDC5_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDC5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.500e-24
Identity = 120/363 (33.06%), Postives = 160/363 (44.08%), Query Frame = 1 
Query:    1 VAEALRRKDAGNSQFYQGRMLAKHTAGRNALSDSCMEYAMGLQELAKADAMIKRLRWLEAQSPQDQPQGGREDGEGDHPAKGNDRSDAM-----DAAATQPDGSTVLNAESDAAAEPTLAEVE-----QTADAVRPALYLNLAATNLLLEEWTPALACCQQVLEVCVPELATAVDAGGAVPLEFVVSSGDGSDS--GXXXXXXXXXXXXXXXXXDRRAAGAANSQNDAAGLSSPLLPPLPSLPLDM----------------------PSN-SDLAAHPLA--------------------AVAAKALYRRSQARRGMGDAAAGREDLRRALRIRPADTAIRRELEEAEAAAAREAAQEALKK 924
            +AEA   KD GN  F++G++LAKHTAG+N L D+C+ YA GL+ L +ADA     R L  ++ Q               A   D SD        +    P   +  N    +   PTL + E     + AD VRP+LYLNLAA NLLL+EWTPA+ACC  VL+ C  +    ++A      E   +  +  D   G                 D   AG+A   +      + L P     P D                       PS  +D  A P A                     VAAK LYRR+ A  G GD AA REDL RALR++P D AI REL++A+   A   A+E+L++
Sbjct:   29 LAEAESCKDRGNVDFHKGKVLAKHTAGKNFLRDACVLYAEGLRVLGEADA-----RLLAQRAQQXXXXXXXXXXXXXXXASAADNSDGSRSLTPSSPVPPPREKSQGNDGQASVLPPTLQDRETISLSKRADTVRPSLYLNLAACNLLLQEWTPAIACCTHVLDECCGDALREIEA------EIGGTGKEARDGVPGVAQGDRRTASAAANDSTDTTRAGSATGTSTGDATDAALAPTGTGAPPDKRQQQQKEGQSGEIYGEHQGTTAPSRGADREAEPRADPPQEESGGRDREAEKTRCREVAAKCLYRRAAALAGGGDVAAAREDLVRALRLKPRDAAISRELKKADKQLAENEARESLRR 380
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig824.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDC5_9PHAE2.500e-2433.06CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig824contigP-wetherbeei_contig824:675..1601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size927
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_001300.1
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.6986115-CDS-P-wetherbeei_contig824:674..16011683187028.6986115-CDS-P-wetherbeei_contig824:674..1601Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig824 675..1601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig824.2.1prot_P-wetherbeei_contig824.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig824 675..1601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig824.2.1

>prot_P-wetherbeei_contig824.2.1 ID=prot_P-wetherbeei_contig824.2.1|Name=mRNA_P-wetherbeei_contig824.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=309bp
VAEALRRKDAGNSQFYQGRMLAKHTAGRNALSDSCMEYAMGLQELAKADA
MIKRLRWLEAQSPQDQPQGGREDGEGDHPAKGNDRSDAMDAAATQPDGST
VLNAESDAAAEPTLAEVEQTADAVRPALYLNLAATNLLLEEWTPALACCQ
QVLEVCVPELATAVDAGGAVPLEFVVSSGDGSDSGGGSGDGDSGGCDGGS
DGDRRAAGAANSQNDAAGLSSPLLPPLPSLPLDMPSNSDLAAHPLAAVAA
KALYRRSQARRGMGDAAAGREDLRRALRIRPADTAIRRELEEAEAAAARE
AAQEALKK*
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mRNA from alignment at P-wetherbeei_contig824:675..1601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig824.2.1 ID=mRNA_P-wetherbeei_contig824.2.1|Name=mRNA_P-wetherbeei_contig824.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig824:675..1601+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCGAGGCGTTGCGCCGCAAGGACGCTGGAAACTCTCAGTTCTACCA
GGGCCGGATGCTTGCCAAGCACACAGCTGGGAGGAACGCGCTGTCGGATT
CGTGCATGGAATACGCGATGGGATTGCAGGAACTCGCAAAGGCGGATGCC
ATGATAAAGCGTCTCCGTTGGTTGGAAGCGCAATCGCCGCAGGATCAACC
GCAAGGAGGCAGAGAGGATGGAGAAGGCGACCATCCAGCGAAAGGCAACG
ACCGCAGCGACGCGATGGACGCAGCGGCAACACAACCCGACGGCTCGACC
GTACTGAACGCCGAATCCGACGCCGCGGCGGAGCCCACCCTTGCCGAGGT
GGAGCAGACTGCCGATGCCGTCCGCCCGGCGCTCTACCTGAACCTAGCGG
CGACAAACCTGCTCCTGGAGGAGTGGACACCAGCGCTGGCGTGCTGCCAG
CAGGTACTCGAAGTTTGCGTCCCGGAGCTGGCGACCGCCGTTGACGCGGG
CGGCGCCGTCCCTCTTGAATTTGTTGTCAGCAGCGGCGACGGCAGCGACA
GCGGTGGCGGCAGCGGCGACGGCGACAGCGGCGGCTGCGACGGCGGCAGC
GATGGTGACAGGCGCGCTGCAGGCGCTGCCAATAGCCAGAATGACGCCGC
AGGCTTGTCGTCACCGCTATTGCCGCCTTTGCCATCGCTGCCACTAGACA
TGCCCAGCAACAGCGACCTCGCCGCCCACCCGCTCGCCGCTGTGGCCGCC
AAAGCGCTTTACCGGCGCAGCCAGGCTCGCCGCGGGATGGGCGACGCCGC
CGCCGGCCGCGAGGACCTCCGGCGGGCGCTACGGATCCGGCCGGCGGACA
CTGCCATCCGCCGCGAACTCGAGGAGGCGGAGGCTGCCGCCGCCCGCGAG
GCGGCGCAAGAGGCACTGAAGAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig824:675..1601+

>mRNA_P-wetherbeei_contig824.2.1 ID=mRNA_P-wetherbeei_contig824.2.1|Name=mRNA_P-wetherbeei_contig824.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig824:675..1601+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCGAGGCGTTGCGCCGCAAGGACGCTGGAAACTCTCAGTTCTACCA
GGGCCGGATGCTTGCCAAGCACACAGCTGGGAGGAACGCGCTGTCGGATT
CGTGCATGGAATACGCGATGGGATTGCAGGAACTCGCAAAGGCGGATGCC
ATGATAAAGCGTCTCCGTTGGTTGGAAGCGCAATCGCCGCAGGATCAACC
GCAAGGAGGCAGAGAGGATGGAGAAGGCGACCATCCAGCGAAAGGCAACG
ACCGCAGCGACGCGATGGACGCAGCGGCAACACAACCCGACGGCTCGACC
GTACTGAACGCCGAATCCGACGCCGCGGCGGAGCCCACCCTTGCCGAGGT
GGAGCAGACTGCCGATGCCGTCCGCCCGGCGCTCTACCTGAACCTAGCGG
CGACAAACCTGCTCCTGGAGGAGTGGACACCAGCGCTGGCGTGCTGCCAG
CAGGTACTCGAAGTTTGCGTCCCGGAGCTGGCGACCGCCGTTGACGCGGG
CGGCGCCGTCCCTCTTGAATTTGTTGTCAGCAGCGGCGACGGCAGCGACA
GCGGTGGCGGCAGCGGCGACGGCGACAGCGGCGGCTGCGACGGCGGCAGC
GATGGTGACAGGCGCGCTGCAGGCGCTGCCAATAGCCAGAATGACGCCGC
AGGCTTGTCGTCACCGCTATTGCCGCCTTTGCCATCGCTGCCACTAGACA
TGCCCAGCAACAGCGACCTCGCCGCCCACCCGCTCGCCGCTGTGGCCGCC
AAAGCGCTTTACCGGCGCAGCCAGGCTCGCCGCGGGATGGGCGACGCCGC
CGCCGGCCGCGAGGACCTCCGGCGGGCGCTACGGATCCGGCCGGCGGACA
CTGCCATCCGCCGCGAACTCGAGGAGGCGGAGGCTGCCGCCGCCCGCGAG
GCGGCGCAAGAGGCACTGAAGAAGTGA
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