mRNA_P-wetherbeei_contig8239.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8239.1.1
Unique NamemRNA_P-wetherbeei_contig8239.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A2P4YHC9_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHC9_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.400e-67
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKHLALGV+ LGCEDAL HLLNFVWPNIFE SPHV++AVFEA+EG  VALG   +LQYVLQGLFHPARRVRE YWK+YNSLY+   D LT AYPA++DDG N+Y RTYLE+ I
Sbjct:   46 MDRDLVHRQTACTTVKHLALGVAGLGCEDALVHLLNFVWPNIFETSPHVINAVFEAVEGCRVALGPHVILQYVLQGLFHPARRVREVYWKIYNSLYMYAQDGLTPAYPALDDDGVNSYNRTYLELCI 172
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: D7FI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI13_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 2.970e-67
Identity = 103/127 (81.10%), Postives = 114/127 (89.76%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKHL+LGV+ LGCEDAL HLLNFVWPNIFE SPHV++AVFEAIEG++VALG  R+LQYVLQGLFHPARRVRE YWKLYNSLYI GAD LT AYP + DDG N YRRT+LE+F+
Sbjct:  433 MDRDLVHRQTACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 559
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A7S2XY64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY64_9STRA)

HSP 1 Score: 209 bits (532), Expect = 6.650e-65
Identity = 96/127 (75.59%), Postives = 112/127 (88.19%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTA TTVKH+ALGV+ LGCEDAL HLLNFVWPNIFE SPHV++AV EA+EG  VALG  ++LQYV+QGL+HPARRVR+ YWK+YN+LY+ GAD LT AYP +EDDG NTYRRT+LE+FI
Sbjct:  218 MDRDLVHRQTASTTVKHIALGVAGLGCEDALTHLLNFVWPNIFENSPHVINAVMEAVEGCMVALGPTKILQYVMQGLYHPARRVRDVYWKIYNTLYMFGADALTPAYPRLEDDGLNTYRRTHLELFI 344
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A1Z9QC94_9BACT (TOG domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT)

HSP 1 Score: 218 bits (555), Expect = 2.460e-63
Identity = 100/127 (78.74%), Postives = 115/127 (90.55%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKHLALGV+ LGCEDA++HLLNFVWPNIFE SPHV+ AVFEAIEG+ VALG  ++LQYVLQGL+HPARRVR+ YWKLYN++YI GAD LT AYP +EDDG NTYRRT+LE+F+
Sbjct: 1147 MDRDLVHRQTACTTVKHLALGVAGLGCEDAVSHLLNFVWPNIFETSPHVIAAVFEAIEGMIVALGPIKILQYVLQGLYHPARRVRDVYWKLYNTIYIYGADALTCAYPRLEDDGVNTYRRTHLELFV 1273
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A6V1S7R5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S7R5_HETAK)

HSP 1 Score: 214 bits (544), Expect = 2.130e-62
Identity = 98/127 (77.17%), Postives = 113/127 (88.98%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQT+CTTVKHLALGV+ LGCEDAL HLLN+VWPNIFEVSPH+++A FEAI G  VALG  RVLQYVLQG++HPARRVR+ YWK+YNSLYI GAD LT AYP +ED+G NTYRRT+LE+F+
Sbjct:  769 MDRDLVHRQTSCTTVKHLALGVAGLGCEDALTHLLNYVWPNIFEVSPHMINACFEAIGGCAVALGPTRVLQYVLQGMYHPARRVRDVYWKIYNSLYIYGADALTPAYPRLEDEGANTYRRTHLELFV 895
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A5D6XVH6_9STRA (SF3b1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVH6_9STRA)

HSP 1 Score: 214 bits (544), Expect = 7.530e-62
Identity = 103/127 (81.10%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKHLALGV+ LGCEDAL HLLNFVWPNIFE SPHV++AVFEAIEG  VALG   VLQYVLQGLFHPARRVRE YWK+YNSLY+   D LT AYPAIEDDG N YRRTYLE+ +
Sbjct: 1144 MDRDLVHRQTACTTVKHLALGVAGLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGCRVALGPHVVLQYVLQGLFHPARRVREVYWKIYNSLYMYAQDALTPAYPAIEDDGINAYRRTYLELCL 1270
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A835Z3L3_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L3_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.630e-61
Identity = 102/127 (80.31%), Postives = 108/127 (85.04%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKH+ALGV+ LGCEDAL HLLNFVWPNIFE S HV++AV EAIEG TVALG ARV  YV QGL+HPARRVRE YWKLYN LYI GAD LT AYP I+DD RN YRRT LEVFI
Sbjct: 1202 MDRDLVHRQTACTTVKHIALGVAGLGCEDALVHLLNFVWPNIFETSAHVINAVMEAIEGCTVALGPARVFMYVAQGLYHPARRVREVYWKLYNMLYIYGADALTPAYPVIQDDARNRYRRTDLEVFI 1328
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: M4BK12_HYAAE (INTEIN_C_TER domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=M4BK12_HYAAE)

HSP 1 Score: 211 bits (537), Expect = 6.810e-61
Identity = 100/127 (78.74%), Postives = 109/127 (85.83%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKHLALGV+ LGCEDAL HLLNFVWPNIFE SPHV++AVFEA+EG  VALG   +LQYVLQGLFHPARRVRE YWK+YNSLY+   D LT AYP +EDDG NTY RTYLE+ I
Sbjct: 1283 MDRDLVHRQTACTTVKHLALGVTGLGCEDALVHLLNFVWPNIFETSPHVINAVFEAVEGCRVALGPHVILQYVLQGLFHPARRVREVYWKIYNSLYMYAQDGLTPAYPVLEDDGVNTYNRTYLELVI 1409
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: A0A2G9IC96_9LAMI (Uncharacterized protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9IC96_9LAMI)

HSP 1 Score: 191 bits (484), Expect = 1.670e-60
Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDD-GRNTYRRTYLEVFI 381
            MDRDLVHRQTA + VKH+ALGV+ LGCEDAL HLLN+VWPNIFE SPHV++AV EAIEG+ VALG A VL Y LQGLFHPAR+VRE YWK+YNSLYI   D L AAYP +EDD G N Y R  L +F+
Sbjct:    1 MDRDLVHRQTAASAVKHMALGVAGLGCEDALIHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPVLEDDEGNNVYGRPELHIFV 128
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BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Match: G5A4J4_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G5A4J4_PHYSP)

HSP 1 Score: 207 bits (528), Expect = 3.010e-60
Identity = 100/127 (78.74%), Postives = 108/127 (85.04%), Query Frame = 1 
Query:    1 MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVMHAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGADMLTAAYPAIEDDGRNTYRRTYLEVFI 381
            MDRDLVHRQTACTTVKHLALGV  LGCEDAL HLLNFVWPNIFE SPHV++AVFEA+EG  VALG   VLQYVLQGLFHPARRVRE YWK+YNSLY+   D LT AYP +EDDG N+Y RTYLE+ I
Sbjct:  739 MDRDLVHRQTACTTVKHLALGVVGLGCEDALLHLLNFVWPNIFETSPHVINAVFEAVEGCRVALGPHVVLQYVLQGLFHPARRVREVYWKIYNSLYMYAQDGLTPAYPMLEDDGVNSYNRTYLELCI 865
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8239.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4YHC9_9STRA2.400e-6777.95Splicing factor 3B subunit 1 n=1 Tax=Phytophthora ... [more]
D7FI13_ECTSI2.970e-6781.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XY64_9STRA6.650e-6575.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z9QC94_9BACT2.460e-6378.74TOG domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A6V1S7R5_HETAK2.130e-6277.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6XVH6_9STRA7.530e-6281.10SF3b1 domain-containing protein n=1 Tax=Pythium br... [more]
A0A835Z3L3_9STRA3.630e-6180.31Splicing factor 3B subunit 1 n=1 Tax=Tribonema min... [more]
M4BK12_HYAAE6.810e-6178.74INTEIN_C_TER domain-containing protein n=3 Tax=Per... [more]
A0A2G9IC96_9LAMI1.670e-6071.09Uncharacterized protein n=1 Tax=Handroanthus impet... [more]
G5A4J4_PHYSP3.010e-6078.74Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8239contigP-wetherbeei_contig8239:2019..2689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FI13
Preferred nameSF3B1
PFAMsSF3b1
Model size384
Max annot lvl2759|Eukaryota
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons2
Evalue4.87e-68
EggNOG OGsCOG5181@1|root,KOG0213@2759|Eukaryota
Descriptionspliceosomal complex assembly
Cds size384
COG categoryA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.5817657-CDS-P-wetherbeei_contig8239:2018..22701683187028.5817657-CDS-P-wetherbeei_contig8239:2018..2270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8239 2019..2270 -
1683187028.594554-CDS-P-wetherbeei_contig8239:2557..26891683187028.594554-CDS-P-wetherbeei_contig8239:2557..2689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8239 2558..2689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8239.1.1prot_P-wetherbeei_contig8239.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8239 2019..2689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8239.1.1

>prot_P-wetherbeei_contig8239.1.1 ID=prot_P-wetherbeei_contig8239.1.1|Name=mRNA_P-wetherbeei_contig8239.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MDRDLVHRQTACTTVKHLALGVSALGCEDALAHLLNFVWPNIFEVSPHVM
HAVFEAIEGLTVALGHARVLQYVLQGLFHPARRVRETYWKLYNSLYISGA
DMLTAAYPAIEDDGRNTYRRTYLEVFI*
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mRNA from alignment at P-wetherbeei_contig8239:2019..2689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8239.1.1 ID=mRNA_P-wetherbeei_contig8239.1.1|Name=mRNA_P-wetherbeei_contig8239.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=671bp|location=Sequence derived from alignment at P-wetherbeei_contig8239:2019..2689- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGAGATTTGGTGCACCGGCAGACGGCGTGCACGACGGTCAAGCA
CCTCGCGCTCGGCGTGTCGGCGCTCGGCTGCGAGGACGCGCTCGCGCACC
TCCTCAATTTCGTCTGGCCCAACATCTTCGAGGTGAGAGAAGCATCGGCG
TCCATTGGCACTTGATGTTTTCGCTGCTGCGGTTACTTGCTTCCTGGCTG
CTCCTGTTTACTATTGCTTATGAAGCTTGGCATGCGCACCCCCCTCGCTC
CCTGGCTCTCTGTGGTCTATATTGGTTGAATTCGGTTTGATTCGAGACTG
TTCTGCTTATCACACTCCCAAGCGAACAAATAATAACTTACACTTCTTTC
TTCTCGTTCCCTCCGCCGTTTTGTTCCTCCTTTTCCGTTCCATGCTTCCG
TCTTCTCTTCGAAATGCAGGTGTCACCGCACGTGATGCACGCGGTGTTCG
AGGCGATCGAGGGGCTGACAGTGGCGCTCGGCCACGCCCGCGTGCTGCAG
TACGTGCTGCAGGGTTTGTTCCACCCGGCGCGCCGCGTGCGCGAGACGTA
CTGGAAGCTCTACAACTCGCTCTACATCTCGGGAGCCGACATGCTGACAG
CAGCGTACCCGGCGATTGAGGACGACGGCCGCAACACCTACCGCCGCACT
TACCTCGAGGTTTTCATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8239:2019..2689-

>mRNA_P-wetherbeei_contig8239.1.1 ID=mRNA_P-wetherbeei_contig8239.1.1|Name=mRNA_P-wetherbeei_contig8239.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig8239:2019..2689- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGAGATTTGGTGCACCGGCAGACGGCGTGCACGACGGTCAAGCA
CCTCGCGCTCGGCGTGTCGGCGCTCGGCTGCGAGGACGCGCTCGCGCACC
TCCTCAATTTCGTCTGGCCCAACATCTTCGAGGTGTCACCGCACGTGATG
CACGCGGTGTTCGAGGCGATCGAGGGGCTGACAGTGGCGCTCGGCCACGC
CCGCGTGCTGCAGTACGTGCTGCAGGGTTTGTTCCACCCGGCGCGCCGCG
TGCGCGAGACGTACTGGAAGCTCTACAACTCGCTCTACATCTCGGGAGCC
GACATGCTGACAGCAGCGTACCCGGCGATTGAGGACGACGGCCGCAACAC
CTACCGCCGCACTTACCTCGAGGTTTTCATCTGA
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