mRNA_P-wetherbeei_contig8230.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8230.2.1
Unique NamemRNA_P-wetherbeei_contig8230.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8230.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8230contigP-wetherbeei_contig8230:1512..2108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size598
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.143643-UTR-P-wetherbeei_contig8230:1511..17931683187028.143643-UTR-P-wetherbeei_contig8230:1511..1793Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8230 1512..1793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.1526985-CDS-P-wetherbeei_contig8230:1793..21081683187028.1526985-CDS-P-wetherbeei_contig8230:1793..2108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8230 1794..2108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8230.2.1prot_P-wetherbeei_contig8230.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8230 1794..2108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8230.2.1

>prot_P-wetherbeei_contig8230.2.1 ID=prot_P-wetherbeei_contig8230.2.1|Name=mRNA_P-wetherbeei_contig8230.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
FEVAAEHLQGELVELVGKFSFFPSCFSVSLYLFILTVSVRLRFCDGCFSN
FRSWQHKVVDLSGVLSGGMRRAEGDENQIEGCLYIERKELLGSPVQAARG
IRFA*
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mRNA from alignment at P-wetherbeei_contig8230:1512..2108-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8230.2.1 ID=mRNA_P-wetherbeei_contig8230.2.1|Name=mRNA_P-wetherbeei_contig8230.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=597bp|location=Sequence derived from alignment at P-wetherbeei_contig8230:1512..2108- (Phaeothamnion wetherbeei SAG_119_79)
TTCGAGGTGGCGGCGGAACACCTGCAGGGAGAGCTCGTCGAACTGGTGGG
GAAATTTTCCTTTTTTCCCTCCTGCTTTTCTGTTTCCCTATATTTGTTCA
TCCTTACTGTTTCGGTTCGCTTACGGTTCTGCGATGGTTGTTTTAGTAAC
TTTCGCAGCTGGCAGCATAAAGTAGTTGATCTGAGCGGGGTTCTGTCGGG
GGGGATGCGCCGTGCTGAAGGAGATGAAAATCAGATCGAAGGATGCCTGT
ATATTGAGCGGAAGGAGCTGCTCGGTTCGCCGGTGCAAGCGGCACGAGGC
ATACGATTCGCGTAGCTGAAGGGCGCATCACTGCCATGGGCGGGTGACGT
TCGCTCTGCTAGGGAAAGAGGAAGAAACGCGGCCCGCCTTTGCATTATAT
TGCGCCTTCGTGACGAATGGCTGCTCGTCTCATCGCCTGGGCAGGCAGAT
TGGGCGGATGCGGCTCCTCGATCTTTGGAAGAGTGCCCCCTCTTGTGCCT
TTGCCTGCCTTTCGGGCCCTTTCCCCTTCCTCCCTTTTCTGCTTCTTCTT
TCTTTCGTTCCCGTTGACTTCACTTCCGGTTCCCCGTCCCTCCCCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8230:1512..2108-

>mRNA_P-wetherbeei_contig8230.2.1 ID=mRNA_P-wetherbeei_contig8230.2.1|Name=mRNA_P-wetherbeei_contig8230.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig8230:1512..2108- (Phaeothamnion wetherbeei SAG_119_79)
TTCGAGGTGGCGGCGGAACACCTGCAGGGAGAGCTCGTCGAACTGGTGGG
GAAATTTTCCTTTTTTCCCTCCTGCTTTTCTGTTTCCCTATATTTGTTCA
TCCTTACTGTTTCGGTTCGCTTACGGTTCTGCGATGGTTGTTTTAGTAAC
TTTCGCAGCTGGCAGCATAAAGTAGTTGATCTGAGCGGGGTTCTGTCGGG
GGGGATGCGCCGTGCTGAAGGAGATGAAAATCAGATCGAAGGATGCCTGT
ATATTGAGCGGAAGGAGCTGCTCGGTTCGCCGGTGCAAGCGGCACGAGGC
ATACGATTCGCGTAG
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