mRNA_P-wetherbeei_contig823.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig823.4.1
Unique NamemRNA_P-wetherbeei_contig823.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Match: A0A485LPX2_9STRA (Aste57867_23971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPX2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.850e-14
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:  172 TLMAENGALRSSLKRRMHVIDTLRKSYLSDVVAIKLELMRKAGLSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQLEIITRESVKVTAAALEA 504
            T  A+N  LR  ++RR  ++D LR +Y+ DVV IK  L +    SD E AA           +PS D++ +L L+ PA+T LH+RPC +CGG +E+I R+   +  + +EA
Sbjct:   21 TAEADNSVLREQVQRRSQLLDELRTAYMKDVVMIKDRLWKHGITSDMELAA-----------LPSVDLKALLPLFSPAETVLHIRPCGTCGGTVELIRRDDALLLQSQIEA 120
[Close]
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Match: A0A1V9YLT8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLT8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.200e-10
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  196 LRSSLKRRMHVIDTLRKSYLSDVVAIKLELMRK-----AGLSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQLEIITRESVKVTAAALEAAAKL 516
            L+  L RR  +IDT+R +Y  DV+ IK  L  K     A L ++ +A            +PS D+R  L L+ PA T+L V PCESCGG LE++  E+ ++  A  + A  L
Sbjct:   34 LKERLVRRSAIIDTIRHAYYHDVIVIKENLQAKELNPAANLDERVHA------------LPSVDLRDTLPLFAPAQTYLRVHPCESCGGTLELVHGETHELNEARSQCAKAL 133
[Close]
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Match: W4GPW8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPW8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.490e-10
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:  166 VHTLMAENGALRSSLKRRMHVIDTLRKSYLSDVVAIKLELMRKAGLSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQLEII 462
            V T  ++   LR  + RR  ++D LR +Y+ DVV +K  L +    +D E AA           +PSAD +P+L L+ PA++ L VRPC +CGG  ++I
Sbjct:   19 VATAASDAAVLRDQIHRRTQLLDKLRMAYMRDVVVVKDRLWKHGIRTDAELAA-----------LPSADFKPLLPLFSPAESLLRVRPCTTCGGGADLI 106
[Close]
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Match: A0A6G0W5Q9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5Q9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.130e-9
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  196 LRSSLKRRMHVIDTLRKSYLSDVVAIKLELM-RKAGLSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQLEIITRES 474
            L+  L RR  +ID +R +Y  D+V +K  L+ R+AG S  E   T          +PS D+R +L L+ P++T+L V PCE CGG +E++  E+
Sbjct:   42 LKERLNRRTMLIDVVRSAYYRDIVVVKEALLAREAGASVSERVNT----------LPSTDLRDLLPLFAPSETFLRVHPCEKCGGVVELVHGET 125
[Close]
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Match: A0A024TQR9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQR9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.200e-9
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  172 TLMAENGALRSSLKRRMHVIDTLRKSYLSDVVAIKLELMRKAGLSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQLEII 462
            T  ++   LR  + RR  ++D LR +Y+ DVV +K  L +    +D E             A+PSAD++P+L L+ PA++ L +RPC +CGG  ++I
Sbjct:   21 TATSDAAVLRDQIHRRTQLLDELRAAYIRDVVVMKDRLWKHGIRTDAEL-----------HALPSADVKPLLPLFSPAESLLRIRPCATCGGGADLI 106
[Close]
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Match: A0A3R6ZEC9_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZEC9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.490e-7
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:  166 VHTLMAENGALRSSLKRRMHVIDTLRKSYLSDVVAIKLELMRKAGLSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQLE 456
            V T  ++   LR  + RR  ++D LR +Y+ DVV +K  L +    +D E AA           +PSAD +P+L L+ PA+++L VRPC   G  L+
Sbjct:   19 VATAASDAAVLRDQIHRRTQLLDKLRMAYMRDVVVVKDRLWKHGIRTDAELAA-----------LPSADFKPLLPLFSPAESFLRVRPCTVRGVYLQ 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig823.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A485LPX2_9STRA6.850e-1438.74Aste57867_23971 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YLT8_9STRA4.200e-1037.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4GPW8_9STRA5.490e-1037.37Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0W5Q9_9STRA6.130e-938.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TQR9_9STRA8.200e-935.05Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A3R6ZEC9_9STRA2.490e-736.08Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig823contigP-wetherbeei_contig823:5491..7245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHT3
Model size782
Max annot lvl2759|Eukaryota
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons5
Evalue5.48e-30
EggNOG OGs2CNW5@1|root,2QYAX@2759|Eukaryota
Cds size780
BRITEko00000,ko00001,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.922856-CDS-P-wetherbeei_contig823:5490..56071683187027.922856-CDS-P-wetherbeei_contig823:5490..5607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 5491..5607 -
1683187027.932765-CDS-P-wetherbeei_contig823:5942..61211683187027.932765-CDS-P-wetherbeei_contig823:5942..6121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 5943..6121 -
1683187027.9432309-CDS-P-wetherbeei_contig823:6394..65661683187027.9432309-CDS-P-wetherbeei_contig823:6394..6566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 6395..6566 -
1683187027.9575932-CDS-P-wetherbeei_contig823:6853..70821683187027.9575932-CDS-P-wetherbeei_contig823:6853..7082Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 6854..7082 -
1683187027.966747-CDS-P-wetherbeei_contig823:7162..72451683187027.966747-CDS-P-wetherbeei_contig823:7162..7245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 7163..7245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig823.4.1prot_P-wetherbeei_contig823.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig823 5491..7245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig823.4.1

>prot_P-wetherbeei_contig823.4.1 ID=prot_P-wetherbeei_contig823.4.1|Name=mRNA_P-wetherbeei_contig823.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MEDDANEYEDAKEVVDDGSEGSITAAERACYDDESLVDEDRDKELFVDST
PSPRDVHTLMAENGALRSSLKRRMHVIDTLRKSYLSDVVAIKLELMRKAG
LSDKEYAATGGPPAEVRDAVPSADMRPVLFLYGPADTWLHVRPCESCGGQ
LEIITRESVKVTAAALEAAAKLGYDLRAELRLGQQREKEQQERFAEEKRF
LLGAADKARRAGEAAVAHAEMSKQRMAAACASKLAAKDAELQEIPRLRAA
LAAAAASSQD
back to top

mRNA from alignment at P-wetherbeei_contig823:5491..7245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig823.4.1 ID=mRNA_P-wetherbeei_contig823.4.1|Name=mRNA_P-wetherbeei_contig823.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-wetherbeei_contig823:5491..7245- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATGACGCCAACGAATACGAGGATGCGAAGGAAGTCGTCGACGA
CGGCAGTGAAGGGTCAATTACGGCGGCAGAAAGGTGAGTCTCAACAGTAG
GGTTGATGCGAAGCAAATACGCGGGATACATAAACTTGACACCGTCAAAC
GTTATTGTGACAGGGCCTGCTACGACGATGAGTCGCTGGTCGACGAGGAT
CGAGACAAAGAACTGTTTGTGGATTCGACACCGTCGCCGAGGGACGTTCA
TACTCTCATGGCAGAGAACGGCGCGCTACGCAGCAGTCTAAAGCGTCGAA
TGCACGTCATTGATACCTTGCGAAAATCTTATTTGAGCGATGTCGTCGCG
ATCAAACTGGAGCTGATGAGAAAAGCTGGGCTATCCGACAAGGTAAGAAC
GAGGCGACCCCTTTGGACTCTTTTTTTAAAGGAAGTCAAAAAGCATTTGC
TACCCTCCTTTCACGAGTCTTCATCCAAAGTAGTTGTTGTCCAAGGTCCC
TTTGCACTGCCCTCACCCTTGCACAGGGCGGAAACCCTTGTGCCGTCATC
TTTGTTCGTAGCCCGCACGATCCCACGTTATCTCTCAAACCCTCTTTTTC
TCTGGTCGACTAACTTCCCCACTTTATTAATCCTTCTGCTGTGGTCTGTC
GCCGCATCCTTCCATCCGTTCCACCGCAGGAATATGCCGCCACCGGCGGT
CCGCCTGCCGAGGTCCGAGACGCCGTCCCATCGGCCGATATGCGTCCGGT
TCTGTTCCTTTACGGACCCGCCGACACGTGGCTGCACGTTCGACCCTGCG
AGTCGTGCGGCGGGCAGCTCGAAATCATAACTCGTGAGAGCGTCAAGGTG
AGTTGCTGCCGCCGGAGCATTTCTCAGGAATTTTCCTGCAACGATTCCCG
GGACCTCGTTCCGTTTTTGTCGTTTCTCTAGGATCGGTTTCGTTGCCTGG
GATGGAGGTCTTCTTCTTGTCACTTCAGCAGCTTCTTGACCGAGATTCTG
CCCCATTTTCAGACCCACTCGTTCCGCACATTCCGGCCGCCCTTTTCTGT
CCACCGCCACCGTGGCCGCTGGCGCCGTCGCCACCAACTACAGGTGGCCA
AGCTCAAGGCAGAAATGGCGGCAGCCGCCGCGGCCCTCGAGGCCGCCGCA
AAGCTCGGCTACGACCTGCGGGCAGAACTGCGGCTCGGGCAGCAGCGCGA
GAAGGAGCAACAGGAGCGGTTCGCCGAGGAAAAACGTTTCCTGTTGGGGG
CCGCTGACAAGGCACGGCGGGCGGGCGAGGCGGCCGTTGCCCACGCTGAG
ATGGTAAGGCGCCCTTTGAGTGCGGAGTGGCGGGAAGATTGGGGAAAGCG
GCGGTGGTGGAGGGGGGTTGTTCGCGGAAGGCAGTCTCTTTGGGCTGCGT
GGGAGAACGTTGTTTGGCACAGACGCCAAATGACATGAGGAAGAAGGATT
CAATAGGGCAGTCTTCTTGGCGCTCTTCCTTTTCGGCAATCATTTCGTGA
GCTTTGCTTCAATTCCGTGCATCGCTTCGCGGTCCCCCTGCTGTGTATGC
TTCGTATGGCAACCTCCGAAAAATAGCAAAGATTTTCCGACTGCTCTGCC
CATTTCCTTGAACCCTGCTTCTCTGCATCTTTCCGCAGTCCAAGCAGCGG
ATGGCGGCAGCCTGCGCCTCCAAGCTCGCCGCGAAAGATGCCGAGCTCCA
AGAAATCCCCCGGCTCCGTGCCGCACTCGCCGCCGCCGCTGCCAGCAGCC
AGGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig823:5491..7245-

>mRNA_P-wetherbeei_contig823.4.1 ID=mRNA_P-wetherbeei_contig823.4.1|Name=mRNA_P-wetherbeei_contig823.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig823:5491..7245- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATGACGCCAACGAATACGAGGATGCGAAGGAAGTCGTCGACGA
CGGCAGTGAAGGGTCAATTACGGCGGCAGAAAGGGCCTGCTACGACGATG
AGTCGCTGGTCGACGAGGATCGAGACAAAGAACTGTTTGTGGATTCGACA
CCGTCGCCGAGGGACGTTCATACTCTCATGGCAGAGAACGGCGCGCTACG
CAGCAGTCTAAAGCGTCGAATGCACGTCATTGATACCTTGCGAAAATCTT
ATTTGAGCGATGTCGTCGCGATCAAACTGGAGCTGATGAGAAAAGCTGGG
CTATCCGACAAGGAATATGCCGCCACCGGCGGTCCGCCTGCCGAGGTCCG
AGACGCCGTCCCATCGGCCGATATGCGTCCGGTTCTGTTCCTTTACGGAC
CCGCCGACACGTGGCTGCACGTTCGACCCTGCGAGTCGTGCGGCGGGCAG
CTCGAAATCATAACTCGTGAGAGCGTCAAGGTGACCGCCGCGGCCCTCGA
GGCCGCCGCAAAGCTCGGCTACGACCTGCGGGCAGAACTGCGGCTCGGGC
AGCAGCGCGAGAAGGAGCAACAGGAGCGGTTCGCCGAGGAAAAACGTTTC
CTGTTGGGGGCCGCTGACAAGGCACGGCGGGCGGGCGAGGCGGCCGTTGC
CCACGCTGAGATGTCCAAGCAGCGGATGGCGGCAGCCTGCGCCTCCAAGC
TCGCCGCGAAAGATGCCGAGCTCCAAGAAATCCCCCGGCTCCGTGCCGCA
CTCGCCGCCGCCGCTGCCAGCAGCCAGGAC
back to top