mRNA_P-wetherbeei_contig12959.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12959.1.1
Unique NamemRNA_P-wetherbeei_contig12959.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A3C0TTA6_9PROT (ATP synthase epsilon chain n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTA6_9PROT)

HSP 1 Score: 176 bits (446), Expect = 1.320e-54
Identity = 93/131 (70.99%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDEKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MA +L F+LVSPERLLLS  VDMVV PG EGEFGVL GHAPLV+ LRPGV+SVHDEK+++RIFVRGGFAEV AAGLTVLAEEA DLA ++   L+ RIK+AEED+ADA++D AR +AQA L+GLR ++ SL
Sbjct:    1 MAGKLHFDLVSPERLLLSEDVDMVVAPGVEGEFGVLLGHAPLVTVLRPGVVSVHDEKAVRRIFVRGGFAEVNAAGLTVLAEEAFDLAEVNVEVLNQRIKNAEEDLADAQTDAARTAAQANLEGLRVIRDSL 131
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A3D3UFB1_9PROT (ATP synthase epsilon chain n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UFB1_9PROT)

HSP 1 Score: 171 bits (432), Expect = 1.790e-52
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDEKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MAD+L FELVSPE+LL+SAQVDMVVVPGTEG+FGVL+GHAP+VSTLRPGVI V D+ +  RIFVRGGFAEVT AGLT+LAE+ ++LA LD A L  RI++A EDVADA  DI RA AQA LD LR ++ +L
Sbjct:    1 MADKLAFELVSPEKLLISAQVDMVVVPGTEGDFGVLSGHAPVVSTLRPGVIDVSDDTAEARIFVRGGFAEVTPAGLTILAEDVLNLAELDTAELDQRIQNATEDVADAADDITRAVAQAVLDNLREIRATL 131
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A3B8XJ49_9HYPH (ATP synthase epsilon chain n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3B8XJ49_9HYPH)

HSP 1 Score: 154 bits (388), Expect = 9.170e-46
Identity = 87/129 (67.44%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDE-KSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQ 384
            MA++L+F+LVSPERLLLS QVDMV VPG EG+ G++ GHAP++STLRPGVI V  E +  +R FVRGGFAEVTAAGLTVLAE  + LA LDA  LS  I +AEEDVADAKSD AR  AQ +LD L+AL+
Sbjct:    1 MAEKLSFDLVSPERLLLSEQVDMVTVPGAEGDMGIMGGHAPVMSTLRPGVIGVQVEGQPERRYFVRGGFAEVTAAGLTVLAEHTVPLAELDAEALSREIANAEEDVADAKSDDARQRAQEKLDQLKALR 129
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A2A5ENF3_9HYPH (ATP synthase epsilon chain n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ENF3_9HYPH)

HSP 1 Score: 153 bits (386), Expect = 1.850e-45
Identity = 86/132 (65.15%), Postives = 106/132 (80.30%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHD-EKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MA++L F+LV+PERLLLS + DMV+VPG+EG+FGVLAGHAP++STLR GVI V   E    RIFVRGGFAEVT AGLTVLAEEA+ ++ LDAATL  RI+DA EDV DA +D A++ AQA LD L+ L+ +L
Sbjct:    1 MAEKLKFDLVAPERLLLSTEADMVIVPGSEGDFGVLAGHAPVMSTLRVGVIEVTGAEGGDSRIFVRGGFAEVTPAGLTVLAEEAVPVSELDAATLDGRIQDATEDVNDAATDEAKSKAQAHLDQLQELRAAL 132
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A2E5BQW1_9HYPH (ATP synthase epsilon chain n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BQW1_9HYPH)

HSP 1 Score: 150 bits (380), Expect = 1.510e-44
Identity = 86/132 (65.15%), Postives = 102/132 (77.27%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDE-KSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MA++L F+LV+PERLLLS + DMVVVPGTEG+FGV+ GH+P+++TLR GVI V    +   RIFVRGGFAEVTAAGLTVLAEEA  LA LDAA L  RIK+A EDV DAKSD  R  AQ  LD L+ L+ +L
Sbjct:    1 MAEKLKFDLVAPERLLLSTEADMVVVPGTEGDFGVMPGHSPVMATLRSGVIDVTGTAEGDTRIFVRGGFAEVTAAGLTVLAEEATPLAELDAAALDQRIKNASEDVQDAKSDDVRVKAQGHLDQLKELRDAL 132
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A2E5KQK6_9PROT (ATP synthase epsilon chain n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5KQK6_9PROT)

HSP 1 Score: 150 bits (380), Expect = 1.560e-44
Identity = 81/122 (66.39%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDE-KSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQL 363
            MAD+L  ELVSPERLL+SA+ DMVVVPG+EG+FGVLA HAP++S++RPGVI VHDE K  +RIF+ GGFAEVTA GLTVLAEEAI  A +D   L  R+KDAEED+ DA++D A   AQA++
Sbjct:    1 MADKLALELVSPERLLVSAEADMVVVPGSEGDFGVLASHAPVISSVRPGVIEVHDEGKETERIFITGGFAEVTAQGLTVLAEEAIPAAEMDRGDLEQRLKDAEEDLEDAETDEAAHKAQAKI 122
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A3A0ES18_9PROT (ATP synthase epsilon chain n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0ES18_9PROT)

HSP 1 Score: 148 bits (374), Expect = 1.270e-43
Identity = 78/131 (59.54%), Postives = 101/131 (77.10%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDEKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MAD++ FELVSPERLL+S Q DMVVVPGT GEFGV+AGH PLVST+RPG++ VHD  S+ +++VRGGFAEV A  LTVLAEEA+ LA L AA +   +++  ED+ADAK   A+A AQA+ D  + ++ +L
Sbjct:    1 MADKIRFELVSPERLLMSTQADMVVVPGTAGEFGVMAGHVPLVSTIRPGIVEVHDGGSVAKLYVRGGFAEVAADVLTVLAEEAVALADLTAAEVEQTLRNLSEDIADAKDPEAKAKAQAEHDRWKLIREAL 131
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: X5M863_9HYPH (ATP synthase epsilon chain n=2 Tax=Parvibaculaceae TaxID=2813035 RepID=X5M863_9HYPH)

HSP 1 Score: 147 bits (372), Expect = 2.410e-43
Identity = 78/131 (59.54%), Postives = 101/131 (77.10%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDEKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MAD+L FELVSPERLL+SA  DMV VPG EG+FGV+AGHAP ++TLRPGV+ V D +   R+FVRGGFAEV A GLT+LAE ++ L  LD+A L   I++A+EDV DA SD AR+ A+ +L+ L+ L+ +L
Sbjct:    1 MADKLHFELVSPERLLMSADADMVTVPGAEGDFGVMAGHAPFMTTLRPGVVDVQDGREETRLFVRGGFAEVNAEGLTLLAEHSVPLDELDSAALDQEIQNAQEDVDDAASDAARSRAEVKLNHLKQLRDAL 131
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A2D8XJ54_9HYPH (ATP synthase epsilon chain n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D8XJ54_9HYPH)

HSP 1 Score: 147 bits (371), Expect = 3.530e-43
Identity = 82/132 (62.12%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHD-EKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MA++L F+LV+PERLL+S + +MV+VPG EG+FGVLAGHAP++STLR GV+ V   +    RIFVRGGFAEVT AGLTVLAEEA+ L+ LDAA L  RIK+  EDV DA +D A+A AQA LD L+ L+ +L
Sbjct:    1 MAEKLKFDLVAPERLLMSTEAEMVIVPGAEGDFGVLAGHAPVMSTLRVGVLDVSGTDGQDMRIFVRGGFAEVTPAGLTVLAEEAVPLSELDAAALDQRIKNVGEDVQDASTDEAKAKAQAHLDQLQELRAAL 132
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BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Match: A0A2A4S2B0_9HYPH (ATP synthase epsilon chain n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4S2B0_9HYPH)

HSP 1 Score: 147 bits (370), Expect = 4.710e-43
Identity = 85/131 (64.89%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    1 MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGVISVHDEKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKDAEEDVADAKSDIARASAQAQLDGLRALQGSL 393
            MA++LTF+LVSPER LLSA VD V VPGTEG FGV  GH PL+STLRPGV+ V  + + +R FVRGGFAEVTA GLT+LAE AIDL  LDAA L   IKDA+EDVADAK+D  R  A   L  L  L+ SL
Sbjct:    1 MAEKLTFDLVSPERKLLSADVDFVTVPGTEGTFGVGPGHVPLMSTLRPGVLDVEGDNA-KRFFVRGGFAEVTAEGLTILAERAIDLDDLDAAALDQEIKDAQEDVADAKNDDVRDLAAEHLASLEELRTSL 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TTA6_9PROT1.320e-5470.99ATP synthase epsilon chain n=1 Tax=Alphaproteobact... [more]
A0A3D3UFB1_9PROT1.790e-5270.23ATP synthase epsilon chain n=1 Tax=Alphaproteobact... [more]
A0A3B8XJ49_9HYPH9.170e-4667.44ATP synthase epsilon chain n=1 Tax=Rhodobiaceae ba... [more]
A0A2A5ENF3_9HYPH1.850e-4565.15ATP synthase epsilon chain n=1 Tax=Rhodobiaceae ba... [more]
A0A2E5BQW1_9HYPH1.510e-4465.15ATP synthase epsilon chain n=1 Tax=Rhodobiaceae ba... [more]
A0A2E5KQK6_9PROT1.560e-4466.39ATP synthase epsilon chain n=1 Tax=Alphaproteobact... [more]
A0A3A0ES18_9PROT1.270e-4359.54ATP synthase epsilon chain n=1 Tax=Proteobacteria ... [more]
X5M863_9HYPH2.410e-4359.54ATP synthase epsilon chain n=2 Tax=Parvibaculaceae... [more]
A0A2D8XJ54_9HYPH3.530e-4362.12ATP synthase epsilon chain n=2 Tax=Hyphomicrobiale... [more]
A0A2A4S2B0_9HYPH4.710e-4364.89ATP synthase epsilon chain n=1 Tax=Rhodobiaceae ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12959contigP-wetherbeei_contig12959:267..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000002_gene466
Preferred nameatpC
PFAMsATP-synt_DE_N
Model size396
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02113,ko:K02114
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Exons1
Evalue7.08e-45
EggNOG OGsCOG0355@1|root,COG0355@2|Bacteria,1RHE4@1224|Proteobacteria,2UBXX@28211|Alphaproteobacteria,4BQZW@82117|unclassified Alphaproteobacteria
DescriptionProduces ATP from ADP in the presence of a proton gradient across the membrane
Cds size396
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185967.993352-CDS-P-wetherbeei_contig12959:266..6621683185967.993352-CDS-P-wetherbeei_contig12959:266..662Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12959 267..662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12959.1.1prot_P-wetherbeei_contig12959.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12959 267..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12959.1.1

>prot_P-wetherbeei_contig12959.1.1 ID=prot_P-wetherbeei_contig12959.1.1|Name=mRNA_P-wetherbeei_contig12959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MADRLTFELVSPERLLLSAQVDMVVVPGTEGEFGVLAGHAPLVSTLRPGV
ISVHDEKSIQRIFVRGGFAEVTAAGLTVLAEEAIDLATLDAATLSARIKD
AEEDVADAKSDIARASAQAQLDGLRALQGSL*
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mRNA from alignment at P-wetherbeei_contig12959:267..662+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12959.1.1 ID=mRNA_P-wetherbeei_contig12959.1.1|Name=mRNA_P-wetherbeei_contig12959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig12959:267..662+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACAGACTGACCTTTGAACTGGTGTCACCCGAACGCCTGCTGCT
GTCCGCGCAGGTGGACATGGTGGTTGTGCCCGGAACCGAAGGCGAATTCG
GCGTGCTGGCCGGACATGCGCCGCTGGTCTCGACCCTGCGTCCCGGAGTG
ATTTCGGTGCATGACGAAAAAAGCATACAACGCATTTTCGTGCGCGGCGG
TTTTGCCGAAGTTACCGCAGCCGGGCTGACCGTGCTTGCGGAAGAAGCCA
TTGATCTGGCGACCCTCGACGCGGCTACGCTCAGCGCGCGTATAAAAGAC
GCCGAAGAAGATGTGGCCGACGCCAAATCCGACATTGCCCGTGCCAGCGC
CCAGGCGCAACTGGACGGCCTGCGCGCATTGCAAGGCAGCCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12959:267..662+

>mRNA_P-wetherbeei_contig12959.1.1 ID=mRNA_P-wetherbeei_contig12959.1.1|Name=mRNA_P-wetherbeei_contig12959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig12959:267..662+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACAGACTGACCTTTGAACTGGTGTCACCCGAACGCCTGCTGCT
GTCCGCGCAGGTGGACATGGTGGTTGTGCCCGGAACCGAAGGCGAATTCG
GCGTGCTGGCCGGACATGCGCCGCTGGTCTCGACCCTGCGTCCCGGAGTG
ATTTCGGTGCATGACGAAAAAAGCATACAACGCATTTTCGTGCGCGGCGG
TTTTGCCGAAGTTACCGCAGCCGGGCTGACCGTGCTTGCGGAAGAAGCCA
TTGATCTGGCGACCCTCGACGCGGCTACGCTCAGCGCGCGTATAAAAGAC
GCCGAAGAAGATGTGGCCGACGCCAAATCCGACATTGCCCGTGCCAGCGC
CCAGGCGCAACTGGACGGCCTGCGCGCATTGCAAGGCAGCCTGTAG
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