mRNA_P-wetherbeei_contig823.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig823.1.1
Unique NamemRNA_P-wetherbeei_contig823.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig823.1.1 vs. uniprot
Match: A0A6H5K3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.390e-14
Identity = 61/162 (37.65%), Postives = 83/162 (51.23%), Query Frame = 1 
Query:  208 TGVSTDVGGGLEFTEHTGDLSPDEEKRLIEELSQARDEMKNMRLRQAMVTHELLGKLSSANAGTDALRAQLEEAVAAGGGPVSCVHAAGGILRPLAAFAPHLAELTREVEALSTANASLAADLASFKDGLVTLVENAAAAFARLAGVKAAAWDERELARLKT 693
            TG+S      LEFT   GDLS ++E RLIEEL  ARDE+KN+++RQAMVTHELLG +  ANA  + L+A L +  A     +      G   +           L  E +  +  NASL  +L      L+ L+E    A    A  KA  W+ R+L R ++
Sbjct:  696 TGISVGFDSSLEFTSVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKAALADMTAQRDARMDMGTLVGMGPKKSGVDPEEFQSLKEEAKLQNKKNASLKTELEETSKALLMLLEELRKACKETARAKAKVWNARDLERARS 857
[Close]
BLAST of mRNA_P-wetherbeei_contig823.1.1 vs. uniprot
Match: D7FHT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.490e-9
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:  208 TGVSTDVGGGLEFTEHTGDLSPDEEKRLIEELSQARDEMKNMRLRQAMVTHELLGKLSSANAGTDALRAQLEEAVAAGGGPVSCVHAAGGILRPLAAFAPHLAELTREVEALSTANASLAADLASFKDGLVTLVE 612
            TG+       LEF    GDLS ++E RLIEEL  ARDE+KN+++RQAMVTHELLG +  ANA  + L+  L +  A     +     AG   +           L  E +     NASL  +L      L+ L+E
Sbjct:  686 TGIRVGFDSSLEFNTVEGDLSKEDEARLIEELDNARDEIKNIKMRQAMVTHELLGNIKVANAEVEMLKVALADMTAQRDARMDMGTLAGMGSKKSGMNPEEFQSLKEEAKLQKKKNASLKTELEETSKALLMLLE 820
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig823.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3R7_9PHAE2.390e-1437.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT3_ECTSI1.490e-937.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig823contigP-wetherbeei_contig823:50..2040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHT3
Model size1216
Max annot lvl2759|Eukaryota
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.44e-10
EggNOG OGs2CNW5@1|root,2QYAX@2759|Eukaryota
Cds size1215
BRITEko00000,ko00001,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.7671995-CDS-P-wetherbeei_contig823:49..7591683187027.7671995-CDS-P-wetherbeei_contig823:49..759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 50..759 -
1683187027.7792377-CDS-P-wetherbeei_contig823:851..10471683187027.7792377-CDS-P-wetherbeei_contig823:851..1047Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 852..1047 -
1683187027.7913353-CDS-P-wetherbeei_contig823:1397..16131683187027.7913353-CDS-P-wetherbeei_contig823:1397..1613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 1398..1613 -
1683187027.8038929-CDS-P-wetherbeei_contig823:1947..20401683187027.8038929-CDS-P-wetherbeei_contig823:1947..2040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 1948..2040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig823.1.1prot_P-wetherbeei_contig823.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig823 50..2040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig823.1.1

>prot_P-wetherbeei_contig823.1.1 ID=prot_P-wetherbeei_contig823.1.1|Name=mRNA_P-wetherbeei_contig823.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=405bp
AGTVLELETGLAERIQELAVAAHRAKQLEGQLSEAAEELHRLRRQRNKLE
SVERKNREMEGELRQLEATTGVSTDVGGGLEFTEHTGDLSPDEEKRLIEE
LSQARDEMKNMRLRQAMVTHELLGKLSSANAGTDALRAQLEEAVAAGGGP
VSCVHAAGGILRPLAAFAPHLAELTREVEALSTANASLAADLASFKDGLV
TLVENAAAAFARLAGVKAAAWDERELARLKTAAGISGGAGGGPRPSGAGG
GAGRPMAAATAAAANTTAGAAGAGASGTAASAGAVSASADSTVPQARSSG
AGRVSSEATDDGRWRSRAGDPEREARLARLRAEKQTKEAMRRRTVAADEA
AAEALRRACDRSADAAAAFLAQRAKEAVAACGAGHDAVYADLLEALRAAR
VAVAR
back to top

mRNA from alignment at P-wetherbeei_contig823:50..2040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig823.1.1 ID=mRNA_P-wetherbeei_contig823.1.1|Name=mRNA_P-wetherbeei_contig823.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1991bp|location=Sequence derived from alignment at P-wetherbeei_contig823:50..2040- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGACGGTGCTCGAGCTGGAGACGGGGCTGGCGGAACGGATACAGGA
GCTCGCCGTGGCGGCGCACCGGGCCAAGCAGCTCGAAGGCCAGGTGAGGC
TTCGTTTCACATTATTGCCTTAGCTTCAGTATTTTCCTTCGCGATTGCTA
CGCTGGCCAGGGTATTGCAACTTTTTTGTTACGGTCTGTAGAAGCGAATG
CGCTGAGATGGATGTATTTGAGGGCGGGAGGCGCGCTCTTTACCTCCCCA
GGGAACGTGTGGAAGGAGTGTGCCGAACGATGCCGTCGTTATCTTTAATA
GGTGCCGTTCTGATTTTACTTCCTTCTCCCGGCTCCCCCTTCCCTCTGTC
TCCTATATCTCATCCGCATTTGCCCGGACGCGTCCACATCCCGTCCGGCC
CCGGCCCGGTCCCTGCCGCGCGTGCAGCTGTCTGAGGCGGCCGAGGAGCT
GCACCGGCTGCGGCGGCAGCGCAACAAGCTAGAGAGCGTCGAGCGCAAGA
ACCGCGAGATGGAGGGCGAGCTGCGGCAGCTCGAGGCCACCACTGGCGTG
TCAACGGATGTCGGCGGCGGGTTGGAGTTCACGGAGCACACGGGCGACCT
CAGCCCGGATGAGGAGAAGCGCCTCATCGAGGAGCTTTCCCAGGTGCGGT
TTGGCGGTTTGACGGCCGGCGGTTTGTGTTTTGGCGGCTCGGTGGCTCGG
TTGTTGGGGGCGGTGTTAATGGCCAGCGGTGACGGCGGTGTGGCTCTGGT
CTGCTACGTCCGCTGCCGCTATGTTTCGAAGCTTTTCCTCTTTATTTCTT
CTGGTGGTCTGCCGCTGTTGCGCAGCCGCTCGGCGACGGTGAGAAGTAGC
CACTTAGGTACAACTGCTATTCCTGACTGCGATGCCGGTGTCATGTCCCT
AGTGATTGTCTTTCGTCCGTCCTCTAACCCCTCTGACTTTCGCATCAGCT
CTGTTGCCGTCGCACACCTCCGCGTTGGCGCACCTCTTAACAGGCGCGGG
ATGAGATGAAAAATATGCGGCTGCGGCAGGCCATGGTGACGCACGAGCTG
CTGGGCAAGCTCTCCAGCGCCAACGCCGGGACAGATGCCCTCCGGGCCCA
ACTCGAGGAGGCCGTGGCGGCTGGTGGCGGGCCGGTGAGTTGCGTGCACG
CTGCTGGTGGGATTCTTCGCCCACTTGCAGCATTTGCTCGTTTAATCTTT
AAGAACACGGAACCTTCACGGAACCGGAACCAGAGACTGATGATTGAGCC
TTTTCTCCCCATTTCCCGCAGGCCGGCAAAGCGCATCTCGCGGAGCTGAC
GCGGGAGGTCGAAGCGCTGTCAACTGCTAACGCGTCGCTCGCGGCGGACC
TCGCCTCGTTTAAGGACGGCCTCGTCACCCTCGTCGAGAACGCGGCCGCC
GCCTTCGCACGGCTGGCGGGCGTTAAGGCGGCGGCGTGGGACGAGCGCGA
GCTGGCCCGGCTCAAGACTGCGGCGGGCATCTCCGGCGGCGCCGGCGGCG
GGCCGCGACCGTCCGGGGCGGGCGGTGGTGCGGGCCGGCCGATGGCGGCG
GCAACGGCTGCTGCCGCCAATACCACTGCTGGTGCTGCCGGTGCCGGCGC
CAGCGGAACTGCAGCTTCTGCTGGCGCGGTTTCAGCCTCTGCCGATTCGA
CGGTACCTCAGGCGCGTTCTTCGGGCGCTGGTAGGGTTTCGTCGGAGGCC
ACCGACGACGGGCGGTGGCGCTCCCGGGCGGGAGACCCCGAAAGGGAGGC
CCGCCTGGCGCGCCTGCGCGCCGAAAAACAGACGAAGGAGGCTATGCGGC
GGCGGACCGTCGCCGCGGACGAGGCGGCCGCCGAGGCGCTCCGGCGGGCG
TGCGATAGGTCGGCCGACGCAGCGGCGGCGTTTCTAGCGCAGCGCGCGAA
GGAGGCGGTGGCGGCGTGCGGCGCGGGTCACGACGCCGTCTACGCGGACC
TGCTGGAGGCGCTGCGGGCGGCGCGAGTGGCGGTGGCACGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig823:50..2040-

>mRNA_P-wetherbeei_contig823.1.1 ID=mRNA_P-wetherbeei_contig823.1.1|Name=mRNA_P-wetherbeei_contig823.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1215bp|location=Sequence derived from alignment at P-wetherbeei_contig823:50..2040- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGACGGTGCTCGAGCTGGAGACGGGGCTGGCGGAACGGATACAGGA
GCTCGCCGTGGCGGCGCACCGGGCCAAGCAGCTCGAAGGCCAGCTGTCTG
AGGCGGCCGAGGAGCTGCACCGGCTGCGGCGGCAGCGCAACAAGCTAGAG
AGCGTCGAGCGCAAGAACCGCGAGATGGAGGGCGAGCTGCGGCAGCTCGA
GGCCACCACTGGCGTGTCAACGGATGTCGGCGGCGGGTTGGAGTTCACGG
AGCACACGGGCGACCTCAGCCCGGATGAGGAGAAGCGCCTCATCGAGGAG
CTTTCCCAGGCGCGGGATGAGATGAAAAATATGCGGCTGCGGCAGGCCAT
GGTGACGCACGAGCTGCTGGGCAAGCTCTCCAGCGCCAACGCCGGGACAG
ATGCCCTCCGGGCCCAACTCGAGGAGGCCGTGGCGGCTGGTGGCGGGCCG
GTGAGTTGCGTGCACGCTGCTGGTGGGATTCTTCGCCCACTTGCAGCATT
TGCTCCGCATCTCGCGGAGCTGACGCGGGAGGTCGAAGCGCTGTCAACTG
CTAACGCGTCGCTCGCGGCGGACCTCGCCTCGTTTAAGGACGGCCTCGTC
ACCCTCGTCGAGAACGCGGCCGCCGCCTTCGCACGGCTGGCGGGCGTTAA
GGCGGCGGCGTGGGACGAGCGCGAGCTGGCCCGGCTCAAGACTGCGGCGG
GCATCTCCGGCGGCGCCGGCGGCGGGCCGCGACCGTCCGGGGCGGGCGGT
GGTGCGGGCCGGCCGATGGCGGCGGCAACGGCTGCTGCCGCCAATACCAC
TGCTGGTGCTGCCGGTGCCGGCGCCAGCGGAACTGCAGCTTCTGCTGGCG
CGGTTTCAGCCTCTGCCGATTCGACGGTACCTCAGGCGCGTTCTTCGGGC
GCTGGTAGGGTTTCGTCGGAGGCCACCGACGACGGGCGGTGGCGCTCCCG
GGCGGGAGACCCCGAAAGGGAGGCCCGCCTGGCGCGCCTGCGCGCCGAAA
AACAGACGAAGGAGGCTATGCGGCGGCGGACCGTCGCCGCGGACGAGGCG
GCCGCCGAGGCGCTCCGGCGGGCGTGCGATAGGTCGGCCGACGCAGCGGC
GGCGTTTCTAGCGCAGCGCGCGAAGGAGGCGGTGGCGGCGTGCGGCGCGG
GTCACGACGCCGTCTACGCGGACCTGCTGGAGGCGCTGCGGGCGGCGCGA
GTGGCGGTGGCACGC
back to top