mRNA_P-wetherbeei_contig8219.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8219.2.1
Unique NamemRNA_P-wetherbeei_contig8219.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8219.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8219contigP-wetherbeei_contig8219:1596..2729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size964
Hectar predicted targeting categoryother localisation
Exons2
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187027.0747044-CDS-P-wetherbeei_contig8219:1596..23351683187027.0747044-CDS-P-wetherbeei_contig8219:1596..2335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8219 1597..2335 -
1683187027.0881116-CDS-P-wetherbeei_contig8219:2505..27291683187027.0881116-CDS-P-wetherbeei_contig8219:2505..2729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8219 2506..2729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8219.2.1prot_P-wetherbeei_contig8219.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8219 1597..2729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8219.2.1

>prot_P-wetherbeei_contig8219.2.1 ID=prot_P-wetherbeei_contig8219.2.1|Name=mRNA_P-wetherbeei_contig8219.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
GSASGARTSAFRNRHHSWSEGAARNADGGAAAAAAAAAAAASAQMSRGGG
MSPGDGAPTRKGGLSIYPVLPATGRIRGLLSYILPISDGSSAGGNATAPY
SALPGSPSRSGAAGGGPDFASAFPSPPAADGNQTAPATTGEPADAPRTMA
AAATAAAPSAFGTAASRPLAEGNDAGATAAAGAHVDHHYSGQPPRAVTSD
VWFPYIRPSYWLSESRADDDSQSDGTGDESPGSAGGAGSGSGVAHWPEGQ
RWPPPAPLMTPVPEEGTPGTRRPSPPPPLQHPAQGDFVLAALLSGGTVPA
AMWGENEDPLPGGADVVSRDD
back to top

mRNA from alignment at P-wetherbeei_contig8219:1596..2729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8219.2.1 ID=mRNA_P-wetherbeei_contig8219.2.1|Name=mRNA_P-wetherbeei_contig8219.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig8219:1596..2729- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGCATCTGGTGCCAGGACAAGCGCATTCCGGAACCGGCACCATTC
GTGGTCGGAAGGTGCGGCGAGAAATGCCGACGGCGGCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCTGCCGCCTCTGCGCAAATGAGCCGCGGAGGAGGG
ATGAGTCCTGGCGATGGCGCTCCCACGCGAAAGGGCGGGCTGTCTATATA
TCCGGTGCTGCCGGCGACCGGAAGGTACGTAGACTGGCGGAGACGTCTGC
CGCTCCTCTCTTTCCGTTTTTGGCACGTGATGGCGCCCTTTATCGGCGCC
TGGTGCTGTTCTGTTTTTGACAGTTGCAGCCGCTTGCGGCTTTCTGGATA
TGCCCATAATTCCGTTTTCTCCGGTTGAATCCTTGAATCCGCAGGATTCG
CGGCCTCCTCAGTTATATCCTCCCGATCAGCGACGGCTCCTCCGCCGGGG
GGAATGCCACCGCGCCGTACTCGGCCTTACCGGGCTCCCCTTCGCGCTCG
GGGGCTGCCGGCGGAGGACCGGACTTCGCCTCGGCCTTCCCGAGCCCGCC
GGCAGCCGACGGGAATCAGACGGCGCCAGCGACAACGGGCGAGCCGGCAG
ACGCGCCGAGAACTATGGCGGCTGCGGCAACGGCTGCGGCGCCTTCGGCA
TTCGGGACGGCCGCTTCGAGGCCGTTGGCTGAGGGGAACGACGCCGGGGC
GACGGCGGCGGCGGGGGCGCATGTGGATCATCATTACTCGGGGCAGCCCC
CGCGGGCGGTGACGAGCGATGTGTGGTTCCCCTACATTCGGCCGTCCTAT
TGGCTGTCAGAGTCGCGGGCGGACGACGATTCTCAGAGCGACGGCACGGG
AGACGAGTCGCCCGGCTCCGCTGGCGGCGCCGGCAGTGGGAGCGGGGTAG
CGCATTGGCCGGAGGGGCAGCGGTGGCCGCCGCCGGCGCCGCTGATGACG
CCAGTGCCGGAAGAAGGCACGCCGGGGACGCGGCGGCCGTCGCCCCCGCC
GCCGCTGCAGCATCCGGCGCAGGGTGACTTCGTGCTGGCCGCGCTCCTTT
CGGGCGGCACGGTGCCCGCCGCCATGTGGGGGGAGAACGAAGACCCGCTG
CCGGGAGGAGCTGACGTCGTCTCACGCGACGATC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8219:1596..2729-

>mRNA_P-wetherbeei_contig8219.2.1 ID=mRNA_P-wetherbeei_contig8219.2.1|Name=mRNA_P-wetherbeei_contig8219.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig8219:1596..2729- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGCATCTGGTGCCAGGACAAGCGCATTCCGGAACCGGCACCATTC
GTGGTCGGAAGGTGCGGCGAGAAATGCCGACGGCGGCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGCTGCCGCCTCTGCGCAAATGAGCCGCGGAGGAGGG
ATGAGTCCTGGCGATGGCGCTCCCACGCGAAAGGGCGGGCTGTCTATATA
TCCGGTGCTGCCGGCGACCGGAAGGATTCGCGGCCTCCTCAGTTATATCC
TCCCGATCAGCGACGGCTCCTCCGCCGGGGGGAATGCCACCGCGCCGTAC
TCGGCCTTACCGGGCTCCCCTTCGCGCTCGGGGGCTGCCGGCGGAGGACC
GGACTTCGCCTCGGCCTTCCCGAGCCCGCCGGCAGCCGACGGGAATCAGA
CGGCGCCAGCGACAACGGGCGAGCCGGCAGACGCGCCGAGAACTATGGCG
GCTGCGGCAACGGCTGCGGCGCCTTCGGCATTCGGGACGGCCGCTTCGAG
GCCGTTGGCTGAGGGGAACGACGCCGGGGCGACGGCGGCGGCGGGGGCGC
ATGTGGATCATCATTACTCGGGGCAGCCCCCGCGGGCGGTGACGAGCGAT
GTGTGGTTCCCCTACATTCGGCCGTCCTATTGGCTGTCAGAGTCGCGGGC
GGACGACGATTCTCAGAGCGACGGCACGGGAGACGAGTCGCCCGGCTCCG
CTGGCGGCGCCGGCAGTGGGAGCGGGGTAGCGCATTGGCCGGAGGGGCAG
CGGTGGCCGCCGCCGGCGCCGCTGATGACGCCAGTGCCGGAAGAAGGCAC
GCCGGGGACGCGGCGGCCGTCGCCCCCGCCGCCGCTGCAGCATCCGGCGC
AGGGTGACTTCGTGCTGGCCGCGCTCCTTTCGGGCGGCACGGTGCCCGCC
GCCATGTGGGGGGAGAACGAAGACCCGCTGCCGGGAGGAGCTGACGTCGT
CTCACGCGACGAT
back to top