mRNA_P-wetherbeei_contig8217.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8217.1.1
Unique NamemRNA_P-wetherbeei_contig8217.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8217.1.1 vs. uniprot
Match: A0A2P4YAW0_9STRA (Lipid binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAW0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.300e-5
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    7 MKRLGDLKKEKEDLALEVEREEELLTNTLQKKLN 108
            ++RL D+K EKE LALEVEREEELLTN LQKKLN
Sbjct:   70 LERLHDVKSEKEKLALEVEREEELLTNNLQKKLN 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8217.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P4YAW0_9STRA4.300e-579.41Lipid binding protein (Fragment) n=1 Tax=Phytophth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8217contigP-wetherbeei_contig8217:33..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000026057
PFAMsDUF2046
Model size243
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.76e-06
EggNOG OGsKOG2129@1|root,KOG2129@2759|Eukaryota,1ME7V@121069|Pythiales
Ec32 ortholog descriptionProtein of unknown function DUF2046
Ec32 orthologEc-05_005760.1
DescriptionCoiled-coil domain 6. Source PGD
Cds size240
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187026.9577081-UTR-P-wetherbeei_contig8217:32..351683187026.9577081-UTR-P-wetherbeei_contig8217:32..35Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8217 33..35 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187026.9700508-CDS-P-wetherbeei_contig8217:35..1851683187026.9700508-CDS-P-wetherbeei_contig8217:35..185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8217 36..185 +
1683187026.9804177-CDS-P-wetherbeei_contig8217:295..3851683187026.9804177-CDS-P-wetherbeei_contig8217:295..385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8217 296..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8217.1.1prot_P-wetherbeei_contig8217.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8217 36..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8217.1.1

>prot_P-wetherbeei_contig8217.1.1 ID=prot_P-wetherbeei_contig8217.1.1|Name=mRNA_P-wetherbeei_contig8217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MMKRLGDLKKEKEDLALEVEREEELLTNTLQKKLNQAREPAAHSETCFQR
EKVDLENQLEREQEFIVNKLRKQLDQVRFD
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mRNA from alignment at P-wetherbeei_contig8217:33..385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8217.1.1 ID=mRNA_P-wetherbeei_contig8217.1.1|Name=mRNA_P-wetherbeei_contig8217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=353bp|location=Sequence derived from alignment at P-wetherbeei_contig8217:33..385+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATGATGAAGCGGCTGGGTGACCTTAAGAAAGAGAAAGAGGACTTGGC
TCTCGAGGTGGAGCGGGAGGAGGAGCTGCTCACCAACACGCTGCAGAAGA
AGCTCAATCAGGCGAGAGAGCCCGCCGCACACTCAGAGACTTGTTTTCAA
AGGGTAAAGGTACTGTGGAAAGAGTGCTGCAGAGGCGCGGTGCACCATAT
TAATGCATGTATTGCTTGCTGGACGATCCGAACGGCATAATTCGCGCGTC
GCAGGTGCGGCAGGAGAAGGTCGACCTGGAGAACCAGCTGGAGCGAGAGC
AGGAGTTTATCGTTAACAAGCTCCGAAAGCAGCTGGACCAGGTCAGGTTT
GAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8217:33..385+

>mRNA_P-wetherbeei_contig8217.1.1 ID=mRNA_P-wetherbeei_contig8217.1.1|Name=mRNA_P-wetherbeei_contig8217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig8217:33..385+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAAGCGGCTGGGTGACCTTAAGAAAGAGAAAGAGGACTTGGCTCT
CGAGGTGGAGCGGGAGGAGGAGCTGCTCACCAACACGCTGCAGAAGAAGC
TCAATCAGGCGAGAGAGCCCGCCGCACACTCAGAGACTTGTTTTCAAAGG
GAGAAGGTCGACCTGGAGAACCAGCTGGAGCGAGAGCAGGAGTTTATCGT
TAACAAGCTCCGAAAGCAGCTGGACCAGGTCAGGTTTGAT
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