mRNA_P-wetherbeei_contig8208.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8208.1.1
Unique NamemRNA_P-wetherbeei_contig8208.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.570e-32
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 MGIISSKPILASKEAANLLGPTLWSKLDHAFRRLGDGRVLDAKTFHRHVLAGFPMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLLFQV 309
            MG+  SKPI++ KEA  +LGP +W+KL+ A+RR+ DG  LD K F +H LAGFPMMPK LVD  FDA D  GRG++++Q+F CGLAV+L G  + +LRLLF++
Sbjct:   38 MGLYGSKPIISVKEAQAMLGPAMWAKLEAAYRRISDGNALDPKAFQKHFLAGFPMMPKNLVDSLFDAFDVGGRGFISEQEFCCGLAVMLKGPLDAQLRLLFEI 140
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BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Match: A0A7S1C481_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C481_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.310e-12
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    1 MGIISSKPILASKEAANLLGPTLWSKLDHAFRRLGDG----RVLDAKTFHRHVLAGFPMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLLFQVGEANE 324
            MG  SS+ I++  EA + LG    + ++  FRRL         +D  TF R VL+  P+MP+ L    FDA D  GRG ++   FMCG+A++  G  ++RLR LF+V + +E
Sbjct:    1 MGGRSSR-IISYDEACDRLGSEAVAAVEEGFRRLCARPRGLAPMDGTTFRRDVLSDLPLMPQKLQTMLFDAFDIEGRGELSLDAFMCGVAIIRVGTEDQRLRFLFRVYDVDE 111
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BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Match: A0A7S2HM96_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2HM96_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-10
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   13 SSKPILASKEAANLLGPTLWSKLDHAFRRLG---DGRVLDAKTFHRHVLAGFPMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLLFQV 309
            +S+P++    A   LG +  +K++  F RLG   + R  + +T   + + G P+ P+ L +  F+  D    G VT Q F+CGLAV+  G PEE+LRLLF V
Sbjct:    3 TSRPVIEYHAAVRRLGSSEVAKIEEGFERLGVRGELRRSEFRTGFLNSVVGAPV-PEDLAEALFNGFDTGATGAVTVQQFICGLAVLRHGTPEEKLRLLFAV 103
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BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Match: A0A812TTM2_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812TTM2_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 5.540e-9
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    1 MGIISSKPILASKEAANLLGPTLWSKLDHAFRRL---GDGRVLDAKTFHRHVLAGFPMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLLFQVGEANEVER 333
            MG   S+ +L  +EA  LLG    ++++  F RL   G+ R  + +    +  AG P+ P  L +  F   D    G +T Q F+CG+A++  G+P+++LRLLF V +A+  +R
Sbjct:    1 MGAGGSRQLLDYEEAVQLLGTEEVARIEEGFHRLSVRGELRPAEFRAGFLNSGAGDPV-PDALAEALFQCFDSDSTGTLTVQQFICGVAILCRGRPDQKLRLLFMVYDADRDQR 113
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BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Match: A0A7S4SXL2_9DINO (Calmodulin (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SXL2_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 2.750e-8
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 1 
Query:    1 MGIISSKPILASKEAANLLGPTLWSKLDHAFRRLGDGRVLDAKTFHRHVLAGF--PMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLLFQVGEANEVER 333
            MG  SS+ I+    A   LG +  ++++  F R G    L  + F    L       +P+      F+  D S  G +T ++F+C LAV+ CG PEE+LRL+F V +A+  ER
Sbjct:   34 MGQASSRTIIDYDAAVARLGGSEVARIESGFARFGVQGRLSRQEFRTGFLCSVLGTDVPQDFAAALFNGFDASASGTITVREFVCALAVLRCGTPEEKLRLVFAVYDADRDER 146
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BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Match: A0A813FD65_POLGL (Calmodulin n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FD65_POLGL)

HSP 1 Score: 57.4 bits (137), Expect = 2.700e-7
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   25 ILASKEAANLLGPTLWSKLDHAFRRLGDGRVLDAKTFHRHVL---AGFPMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLLFQVGEANEVER 333
            IL   EA   LG     K++  F RL  G  L    F    L   AG P+ P+ L +  F + D    G ++ + F+CG+AV+  G PEE+LRLLF V +A+  +R
Sbjct:   12 ILDYAEAVRRLGHEEVEKIEEGFARLAVGGQLRRAEFRNGFLNSGAGDPV-PEALAEALFSSFDSDASGSLSVRQFVCGVAVLRDGCPEEKLRLLFNVYDADRDQR 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YVN1_9STRA2.570e-3256.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1C481_9STRA8.310e-1238.39Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2HM96_9DINO1.560e-1037.25Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A812TTM2_9DINO5.540e-933.33Calmodulin n=1 Tax=Symbiodinium sp. CCMP2592 TaxID... [more]
A0A7S4SXL2_9DINO2.750e-833.63Calmodulin (Fragment) n=1 Tax=Alexandrium monilatu... [more]
A0A813FD65_POLGL2.700e-736.79Calmodulin n=1 Tax=Polarella glacialis TaxID=89957... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8208contigP-wetherbeei_contig8208:411..1494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LR49
PFAMsDUSP,PX,UCH
Model size339
Max annot lvl2759|Eukaryota
KEGG koko:K11837
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.29e-14
EggNOG OGsCOG5560@1|root,KOG1870@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size339
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187026.292994-CDS-P-wetherbeei_contig8208:410..5781683187026.292994-CDS-P-wetherbeei_contig8208:410..578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8208 411..578 +
1683187026.304486-CDS-P-wetherbeei_contig8208:1323..14941683187026.304486-CDS-P-wetherbeei_contig8208:1323..1494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8208 1324..1494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8208.1.1prot_P-wetherbeei_contig8208.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8208 411..1494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8208.1.1

>prot_P-wetherbeei_contig8208.1.1 ID=prot_P-wetherbeei_contig8208.1.1|Name=mRNA_P-wetherbeei_contig8208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MGIISSKPILASKEAANLLGPTLWSKLDHAFRRLGDGRVLDAKTFHRHVL
AGFPMMPKVLVDRWFDALDPSGRGYVTQQDFMCGLAVVLCGKPEERLRLL
FQVGEANEVERKE
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mRNA from alignment at P-wetherbeei_contig8208:411..1494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8208.1.1 ID=mRNA_P-wetherbeei_contig8208.1.1|Name=mRNA_P-wetherbeei_contig8208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1084bp|location=Sequence derived from alignment at P-wetherbeei_contig8208:411..1494+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATAATCAGCTCCAAGCCTATACTGGCTTCTAAGGAGGCAGCCAA
TTTGCTGGGGCCAACTCTCTGGTCGAAGCTGGATCATGCCTTTCGCCGCC
TCGGCGATGGGCGCGTGTTGGATGCAAAAACCTTCCACCGGCATGTCCTT
GCGGGCTTTCCGATGATGGTGAGTGTTTCAGCAATGCCGTGTTACCTATT
GAGCTCGTTTTCGCTTCTTGCTAACATTTATTAGTGAGAAAATGGTAAGC
GAAGAGCAACCCGAGCCCAGGTCGTAGGCAGTCCGTCGGTCCAAGAGTTT
ATTTTCGGTGGACTTGCTGTTTGCAAGCAATGTGTTGTTAGCTCGCCGTT
TCAGTACAGTATCTTGGTTGTCCGATTCGGTTCCCGGAGGCCATCGGGTT
GACACCAGTGCGTTCTGCAAAGACACAGCCGCAAATCTGCTGCACTTTGT
GGCCTACATGGCATGGCATTCTCTCTTTTAAATTGATGCGGAGCTTCGTT
CTTGGTGCGCGACAGCAAAACGACGGCTTATTTACGCCTGCGACACACGC
CGCCCAGCCCTCACCACAGCCCTTTCTCTGCCTTTTGCTCTACCCCGCCA
TGATTCACGCGATAACGGCGCTTTTTCGCGGCCCTACCTGTGGCGACGCA
AATGGCGGCGGCGGCCGCGCCGGTGGCGACAAATGGGATGACAACGGTGG
CGGTTGCGGCGGCGGTGACGGCTTTGGCGGCGGCTTCGGCGGCGGCGGCG
GTGGCTTCGGCTGCTGTAACGGCGGCGCTGGCGGTGAATGCTGGTGACGG
ACGCCTGCGGCCGTCCGTCCAATCCGGTCCAATCTGACATACCGCATCGA
ATCACTCTGAAAATTGACCGAATCGTGCCGGAAATCGAACCGAATCCGAA
TCGGGGCGCGCAGCCAAAGGTTCTGGTGGACCGGTGGTTCGACGCGCTGG
ACCCGTCCGGGCGCGGCTATGTCACCCAGCAGGACTTCATGTGTGGCCTT
GCGGTGGTGCTCTGCGGCAAGCCCGAGGAGCGCCTCCGGCTCCTTTTCCA
GGTGGGTGAAGCGAACGAAGTAGAGAGAAAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8208:411..1494+

>mRNA_P-wetherbeei_contig8208.1.1 ID=mRNA_P-wetherbeei_contig8208.1.1|Name=mRNA_P-wetherbeei_contig8208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig8208:411..1494+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATAATCAGCTCCAAGCCTATACTGGCTTCTAAGGAGGCAGCCAA
TTTGCTGGGGCCAACTCTCTGGTCGAAGCTGGATCATGCCTTTCGCCGCC
TCGGCGATGGGCGCGTGTTGGATGCAAAAACCTTCCACCGGCATGTCCTT
GCGGGCTTTCCGATGATGCCAAAGGTTCTGGTGGACCGGTGGTTCGACGC
GCTGGACCCGTCCGGGCGCGGCTATGTCACCCAGCAGGACTTCATGTGTG
GCCTTGCGGTGGTGCTCTGCGGCAAGCCCGAGGAGCGCCTCCGGCTCCTT
TTCCAGGTGGGTGAAGCGAACGAAGTAGAGAGAAAAGAG
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