mRNA_P-wetherbeei_contig8187.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8187.2.1
Unique NamemRNA_P-wetherbeei_contig8187.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: A0A4D9CX67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX67_9STRA)

HSP 1 Score: 214 bits (545), Expect = 9.340e-60
Identity = 122/267 (45.69%), Postives = 162/267 (60.67%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLLNRQAWLMLSGVAVAAATAAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQ---LTLDYHRRGVAPDGPPLGRRRGL------VGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGLRERW 774
            R GV+AVP+YPP+P+ L  SL KL  + +  GA LCL D  ++  R +S+LN+L+   W          +  A+   S DEP L   DIAF+QYTSGST +PKGVMI+F NL H    L L   RR +        R R L      VGVSWLPQYHDMGLIV  + PF GG+RM++ SPM FV+ P +W++ +S V AH+S AP+FA  LTAR++     + QR  E ALDL  + F+  GGEP+ A+ + +F+  F  +GLR  W
Sbjct:  114 RLGVVAVPVYPPNPTKLKMSLEKLELIVTSAGATLCLTDNTINWFRKASQLNVLSSAKWPKGLKWDSTDSILASTGTSCDEPGLHPNDIAFLQYTSGSTGDPKGVMITFGNLDHNVNDLILFSLRRDIF-----CNRTRTLENIEVPVGVSWLPQYHDMGLIVGLIMPFVGGFRMYHMSPMTFVKNPLIWIKTISNVGAHFSTAPNFALGLTARRW-----KSQRKKE-ALDLGTLQFIQLGGEPVSAEHIASFSSTFAGYGLRRDW 369          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: W7U9U8_9STRA (Polyketide synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9U8_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.150e-59
Identity = 122/267 (45.69%), Postives = 161/267 (60.30%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLLNRQAWLMLSGVAVAAATAAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQ---LTLDYHRRGVAPDGPPLGRRRGL------VGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGLRERW 774
            R GV+AVP+YPP+P+ L  SL KL  + +  GA LCL D  ++  R +S+LN+L+   W          +  A    S DEP L   DIAF+QYTSGST +PKGVMI+F NL H    L L   RR +        R R L      VGVSWLPQYHDMGLIV  + PF GG+RM++ SPM FV+ P +W++ +S V AH+S AP+FA  LTAR++     + QR  E ALDL  + F+  GGEP+ A+ + +F+  F  +GLR  W
Sbjct:   70 RLGVVAVPVYPPNPTKLKMSLEKLELIVTSAGATLCLTDNTINWFRKASQLNVLSSAKWPKGLKWDSTDSILAGTGTSCDEPGLHPNDIAFLQYTSGSTGDPKGVMITFGNLDHNVNDLILFSLRRDIF-----CNRTRTLENIEVPVGVSWLPQYHDMGLIVGLIMPFVGGFRMYHMSPMTFVKNPLIWIKTISNVGAHFSTAPNFALGLTARRW-----KSQRKKE-ALDLGTLQFIQLGGEPVSAEHIASFSSTFAGYGLRRDW 325          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: D7G4W3_ECTSI (Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W3_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 2.620e-54
Identity = 115/277 (41.52%), Postives = 163/277 (58.84%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLL--NRQAWLML--------SGVAVAAAT----------AAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQLTLDYHRRGV---APDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGL 762
            RAG+LAVP+YPP+P++L KSL KL+ +   C  ++ L    V+ LRLSS+L  +      W  L         G  +AAA                PSFD+P ++  D+AF+Q+TSGST++PKGVM+++ NL H +    +       A  GP  G R      SWLP +HDMGLI  TLAPF  G+   Y SP++F+RRP +W++LMS+ K+  + APDFAF+L  RK+  +  + +      LDL +I F+ SGGEP+RA +V+ FA+AF   GL
Sbjct:   67 RAGILAVPVYPPNPATLKKSLQKLQLIVDSCTPKMILVCPLVNKLRLSSKLRAVATGNSDWPKLRYHCCPDVKGETIAAAGWRGGGSKQMGPETKRPSFDDPTIKPGDVAFLQFTSGSTSDPKGVMLTYGNLTHNIACIINSSDAQIAARGGPAEGNRTWF---SWLPTFHDMGLIQGTLAPFVAGWTAAYCSPISFMRRPLMWLELMSKEKSQMTAAPDFAFRLCVRKWKEMSPESRAALH--LDLRHIMFMQSGGEPVRASTVRDFAEAFATVGL 338          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: A0A6H5J7K1_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K1_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.060e-52
Identity = 107/282 (37.94%), Postives = 166/282 (58.87%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLL--NRQAW-------------------LMLSGVAVAAATAAAAE-----PSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQL--TLDYHRRGVAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGL 762
            RAG++AVP+YPP+P++L KSL KL+ +  DC  ++ L    V+ LRL+S+L  +   +  W                   +  SGV   +    +A+     PSFD+P ++ +D+AF+Q+TSGST++PKGVM+++ NL H +   ++     +A  G     +R     SWLP +HDMGLI  TLAPF  G+   Y SP+ F+RRP +W++LMS+ K+  + APDFAF+L  RK+  +  + +      LDL +I F+ +  EP+R+ +V+ FA+AF   GL
Sbjct:   61 RAGIIAVPVYPPNPATLKKSLKKLQLIVDDCAPKMALVCPLVNKLRLASKLRAVATGKSGWPDLTYHCPDVKEEKIATGGMSSSGVGWRSGGGRSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVNSSNAQIAARGEVADGQR--TWFSWLPTFHDMGLIQGTLAPFVAGWTAAYCSPITFMRRPLVWLELMSKEKSQMTAAPDFAFRLCLRKWEEMSPESRTALH--LDLKHIMFMQNAAEPVRSSTVRDFAEAFAAVGL 338          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: A0A6H5L5M1_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M1_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 7.530e-50
Identity = 100/230 (43.48%), Postives = 139/230 (60.43%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLLN--RQAWLML-------------SGVAVAAATAAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQLTL-------DYHRRGVAPDG-PPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKF 621
            RAGVLAVP+YPP P +L KSL KL+ +   C  ++ L  G V+ LRL+S+LN ++  R+ W  L              G++     A     SFDE +L E D+AF+Q+TSGST+EPKGVM++F NL H            +  RG +  G   +G   G+ G SWLPQYHD+GL++ TL PF  G+RM Y SP+ FVR+P LW++L+S  +A +  APDF+ +L  RK+
Sbjct:   96 RAGVLAVPVYPPSPLTLSKSLTKLQSIVEACDPKVILVSGDVNRLRLASKLNFVSSARRLWPDLPYKVARSSGVSSGGGISKWLGGAGGGGESFDEESLGEGDVAFLQFTSGSTSEPKGVMVTFGNLEHNARFISRMSEKSFKSRGFSFSGREEVG---GVRGFSWLPQYHDLGLVMCTLTPFVSGWRMGYMSPLDFVRKPLLWLRLLSAERAMFGCAPDFSLRLCVRKW 322          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.460e-49
Identity = 104/282 (36.88%), Postives = 163/282 (57.80%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLL--NRQAW--------------LMLSGVAVA----------AATAAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQL--TLDYHRRGVAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGL 762
            RAG++AVP+YPP+P++L +SL KL+ +   C  ++ L    V+ LRL+S+L  +   +  W              +   G++ A          +A      PSFD+P ++ +D+AF+Q+TSGST++PKGVM+++ NL H +   ++     +A  G     +R     SWLP +HDMGLI  TL PF  G+   Y SP+ F+RRP +W++LMS+ K+  + APDFAF+L  RK+  +  + +      LDL +I F+ +  EP+RA +V+ FA+AF   GL
Sbjct:  529 RAGIIAVPVYPPNPATLKRSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLRAVATGKSGWPDLPYHCPDVKEENIPTGGMSSATVGWRSGGGKSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVNSSNAQIAERGGVADGQR--TWFSWLPTFHDMGLIQGTLTPFVAGWTAAYCSPITFMRRPLVWLELMSKEKSQMTAAPDFAFRLCVRKWEEMSPENRTALH--LDLKHIMFMQNAAEPVRASTVRDFAEAFAAVGL 806          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: D7FH91_ECTSI (AMP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH91_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 3.780e-49
Identity = 109/290 (37.59%), Postives = 161/290 (55.52%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLL--NRQAWLML--------------SGVAVAA---------ATAAAAE--------PSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQLTLDYHRRG---VAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGL 762
            RAG++AVP+YPP+P++L KSL  L+ +   C  ++ L    V+ LRL+ +L ++   +  W  L              SG+A  A         +T A  +        PSFD+P ++ ED+AF+Q+TSGST++PKGVM+++ NL H +    +      V   G P G R      SWLP +HDMGLI  TL PF  G+   Y SP+ F+RRP +W++LMS+ K   + APDFAF+L  RK+  +  + +      LDL  I F+ +  EP+RA +V+ FA+ F   GL
Sbjct:  105 RAGIIAVPVYPPNPATLKKSLQNLQLIVEGCTPKMILVCPLVNKLRLAWKLRVVATGKSGWPNLPYHCPDVKEETIPTSGLAYTAVEWKSRGSKSTDAGTKRPSFQMQRPSFDDPTIKPEDVAFLQFTSGSTSDPKGVMLTYGNLTHNIDAIINSSNAQIVERGGVPGGNRTWF---SWLPTFHDMGLIQGTLVPFLAGWTAAYCSPITFMRRPLMWLELMSKEKTQMTAAPDFAFRLCVRKWKEMSLESRAALH--LDLRPIMFMQNAAEPVRASTVRDFAETFAAVGL 389          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: D7G3Q5_ECTSI (Type I fatty acid synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q5_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.180e-48
Identity = 108/273 (39.56%), Postives = 157/273 (57.51%), Query Frame = 1
Query:   31 PPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLLN--RQAWLML-------SGVA-----VAAATAAAAEP--------SFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQLTL-------DYHRRGVAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGL 762
            PP P +L KSL KL+ +   C  ++ L  G V+ LRL+S+LN ++  R+ W  L       SGV+     +  A     +P        SFDE +L E D+AF+Q+TSGST+EPKGVM++F NL H            +  RG +  G   G   G+ G SWLPQYHD+GL++ TL PF  G+RM Y SP+ FVR+P LW++L+S  +A +  APDF+ +L  RK+     + +     ++DLS + ++ +G EP+RA S++ FA  F   GL
Sbjct:    4 PPSPLTLSKSLTKLQGIVEACDPKVILISGDVNHLRLASKLNFVSSARRLWPDLPYKVARSSGVSQWGGHLEVARGGGGQPGRKGVGVESFDEESLGEGDVAFLQFTSGSTSEPKGVMVTFGNLGHNARFISRMSEKSFESRGFSFSGRAEGG--GVRGFSWLPQYHDLGLVMCTLTPFVSGWRMGYMSPLDFVRKPLLWLRLLSAERAMFGCAPDFSLRLCVRKWNEATPEVRASMTDSVDLSALNWIQNGAEPIRASSIRDFAATFEGLGL 274          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: A0A6H5JSY1_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.390e-47
Identity = 109/290 (37.59%), Postives = 162/290 (55.86%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLL--NRQAWLML--------------SGVAVAAAT-----AAAAE------------PSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQLTLDYHRRG---VAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGL 762
            RAG++AVP+YPP+P++L KSL KL+ +   C   + L    V+ LRL+ +L  +   +  W  L              SG++ +A       + +AE            PSFD+P ++ ED+AF+Q+TSGST++PKGVM+++ NL H +    +      V   G P G R      SWLP +HDMGLI  TL PF  G+   Y SP+ F+RRP +W++LMS+ K+  + APDFAF+L  RK+  +  + +      LDL  I F+ +  EP+RA +V+ FA+ F   GL
Sbjct:  103 RAGIIAVPVYPPNPATLKKSLQKLQLIVEGCTPNMILVCPLVNKLRLAWKLRAVATGKIGWPNLPYHCPDVKEETIPTSGLSYSAVEWKSRGSKSAEAGTKRPSFQMQRPSFDDPTIKPEDVAFLQFTSGSTSDPKGVMLTYGNLTHNIDAIINSSNAQIVERGGVPGGNRTWF---SWLPAFHDMGLIHGTLVPFLAGWTAAYCSPITFMRRPLMWLELMSKEKSQMTAAPDFAFRLCVRKWKEMSPESRAALH--LDLRPIMFMQNAAEPVRASTVRDFAETFAAVGL 387          
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Match: F0YLP9_AURAN (AMP-binding domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLP9_AURAN)

HSP 1 Score: 170 bits (431), Expect = 3.720e-46
Identity = 106/260 (40.77%), Postives = 151/260 (58.08%), Query Frame = 1
Query:    1 RAGVLAVPMYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLLNRQAW---LMLSGVAVAAATAAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMISFANLYHQLTLDYHRRGVAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLAPFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFLAVQQQQQRVDEPALDLSNI-YFVSSGGEPLRADSVKAFADAFRPHGLRE 768
            R  V+AVP+YPPDP+ L   L KL  V   CG+ LCL + A+  +R++  L+L +R  W   L+            A++P  D P L ++ +AF+QYTSGST +PKGVM++FAN+Y    L   R  +A  G   G R  + GVSWLPQ+HD GL++  + PF  GYRM   SP+ F++ P LW++ MS+  AHWS APDFA++L             +   P +DL++I  F    GE  R   ++ F + F+P+GLRE
Sbjct:   32 RLRVVAVPVYPPDPNKLALGLKKLDLVKQSCGSSLCLTEKALDQMRIA--LSLTHR--WPPGLVWKRTDRELKFKDASDP--DVPLL-DDAVAFLQYTSGSTGDPKGVMLTFANMY----LPAQRHHLATRGVAAGER--ITGVSWLPQFHDTGLVLCIVGPFVAGYRMVNFSPLTFLKMPLLWLEAMSKYGAHWSAAPDFAYELCENG------DAPKAHAP-IDLASIRQFACGAGERCRPAQLERFMETFKPYGLRE 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8187.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9CX67_9STRA9.340e-6045.69Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U9U8_9STRA1.150e-5945.69Polyketide synthase n=1 Tax=Nannochloropsis gadita... [more]
D7G4W3_ECTSI2.620e-5441.52Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5J7K1_9PHAE2.060e-5237.94AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5M1_9PHAE7.530e-5043.48AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7FRT1_ECTSI2.460e-4936.88Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
D7FH91_ECTSI3.780e-4937.59AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7G3Q5_ECTSI2.180e-4839.56Type I fatty acid synthase, putative n=1 Tax=Ectoc... [more]
A0A6H5JSY1_9PHAE2.390e-4737.59Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
F0YLP9_AURAN3.720e-4640.77AMP-binding domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8187contigP-wetherbeei_contig8187:941..2609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4W3
PFAMsAMP-binding,AMP-binding_C,PP-binding
Model size777
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.95e-50
EggNOG OGsCOG0318@1|root,KOG1176@2759|Eukaryota
Descriptionligase activity
Cds size753
COG categoryIQ
BiGG ReactioniECSE_1348.ECSE_0038
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187024.903578-UTR-P-wetherbeei_contig8187:940..9641683187024.903578-UTR-P-wetherbeei_contig8187:940..964Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8187 941..964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187024.9128714-CDS-P-wetherbeei_contig8187:964..11211683187024.9128714-CDS-P-wetherbeei_contig8187:964..1121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8187 965..1121 +
1683187024.9212415-CDS-P-wetherbeei_contig8187:1402..15661683187024.9212415-CDS-P-wetherbeei_contig8187:1402..1566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8187 1403..1566 +
1683187024.9294343-CDS-P-wetherbeei_contig8187:1971..22731683187024.9294343-CDS-P-wetherbeei_contig8187:1971..2273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8187 1972..2273 +
1683187024.937529-CDS-P-wetherbeei_contig8187:2479..26091683187024.937529-CDS-P-wetherbeei_contig8187:2479..2609Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8187 2480..2609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8187.2.1prot_P-wetherbeei_contig8187.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8187 965..2609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8187.2.1

>prot_P-wetherbeei_contig8187.2.1 ID=prot_P-wetherbeei_contig8187.2.1|Name=mRNA_P-wetherbeei_contig8187.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
MYPPDPSSLDKSLVKLRRVASDCGARLCLCDGAVSALRLSSRLNLLNRQA
WLMLSGVAVAAATAAAAEPSFDEPALREEDIAFIQYTSGSTAEPKGVMIS
FANLYHQLTLDYHRRGVAPDGPPLGRRRGLVGVSWLPQYHDMGLIVATLA
PFCGGYRMHYASPMAFVRRPPLWVQLMSRVKAHWSVAPDFAFKLTARKFL
AVQQQQQRVDEPALDLSNIYFVSSGGEPLRADSVKAFADAFRPHGLRERW
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mRNA from alignment at P-wetherbeei_contig8187:941..2609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8187.2.1 ID=mRNA_P-wetherbeei_contig8187.2.1|Name=mRNA_P-wetherbeei_contig8187.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1669bp|location=Sequence derived from alignment at P-wetherbeei_contig8187:941..2609+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGCCGGTGTGCTGGCCGTCCCGATGTACCCGCCGGACCCATCATCACT CGACAAGTCTCTGGTGAAGCTGCGCCGCGTCGCCTCCGACTGCGGTGCCC GCCTCTGCCTCTGCGACGGCGCCGTCAGCGCACTCCGCCTGTCAAGCCGC CTCAACCTCCTCAACAGGCAAGCATGGCTCAGTCCATTTGTCTTGATCTG TTTTGGGCAGTGGTGTACTGAGCTTTCAGAATTCTGCGTAGGCTAAATTG ATCCAAACCAACGCTGCTGTTTCAAAATATATGGCCTTTTCCCTTTTTTA TACTTTCAATCGAAAAGGTCCTTTTGATGGGAGGGAACATATTGGAACGG GAGGAAGCGGAGCAAGGACGCTGTTTAACAGAACTGCGACTCATTGCCCG GAAACCGCAACGCAGGGCCGATTGGGGAAGGATGGAGTTTCGGCGGACGG GCGCGGCAACAGTGCTGAGCGGGGTCGCTGTGGCAGCAGCGACGGCGGCA GCGGCGGAGCCGTCGTTCGACGAGCCGGCGCTACGGGAGGAGGACATCGC GTTCATCCAGTACACATCCGGGTCGACGGCCGAGCCGAAAGGGGTAATGA TCTCCTTCGCCAACCTCTACCACCAAGTCCAGGTACGTTTTCGTTTTTGA GAGTTTCTGTCTGATAGCAGTCGCCATGCTGTCCGTCTCGTTTCCGTGTC GTCGGTTGGGTTGCTCTAGAGGGAAGCGGTGCGTATGGGATTCATGCAGC GGACTCGCTTACGGGTTGTGCGGGAGAAAGGGCTTTTGCTTCATCGCCAC AAGCCCGTTGTTTTGTGGCAGTTACGAGCGCGTCGTACTAGCTGGACATC CTCGCTTGATGTTTTTTTCCCTTTTCTGTCGAACCATGATATACTCTAAA GAGGAAAAGCAGCGCTGAACAGGGTTCAGGCGGACGCGGAGCACTGGATG CTGCGTGTTTCCCAAGCAAACGCTAAACCCCTCTGACCCCACCTTACCCC CTCCCGTGGGAATAAAAACGAAATGAAACAGCTGACGCTGGACTATCACC GCCGCGGCGTCGCGCCGGACGGCCCGCCGCTCGGCCGACGGCGCGGGCTG GTGGGTGTGTCATGGCTGCCGCAGTATCATGACATGGGGCTGATCGTGGC GACGCTGGCGCCCTTCTGTGGCGGCTACCGCATGCATTACGCGTCGCCGA TGGCGTTCGTGCGGCGGCCACCGCTGTGGGTGCAGCTCATGAGCCGGGTC AAGGCTCACTGGTCGGTCGCGCCCGACTTTGCGTTCAAACTAACGGCCCG CAAGTTCCTGGCGGTGCAGCAGCAGCAGCAGCGGTGAGCGCGCCGGTTGC CTGCCGGTTCAGGGGGCTGTCCTTCTGAATTGTTCTTTTTCGGTTCTGCT GTTCTTTGATTATTGCGGCGCCCGGCTTTTCTCTACGATTCTTCTCCTAA AACCCTAATCGGCCTCCTCTCGGCCGCCTGCAACTTCACAGGAGCGGCAG CAGCCGACGCAGCTGGTACAGCAGCAGCAGTGACGTCAGCGTGGACGAGC CGGCGCTGGACTTGAGCAACATCTACTTCGTGTCGAGCGGGGGGGAGCCG TTGCGGGCGGACTCGGTCAAGGCATTTGCCGACGCCTTCCGTCCGCACGG CCTCCGGGAGCGCTGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8187:941..2609+

>mRNA_P-wetherbeei_contig8187.2.1 ID=mRNA_P-wetherbeei_contig8187.2.1|Name=mRNA_P-wetherbeei_contig8187.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig8187:941..2609+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCCGCCGGACCCATCATCACTCGACAAGTCTCTGGTGAAGCTGCG
CCGCGTCGCCTCCGACTGCGGTGCCCGCCTCTGCCTCTGCGACGGCGCCG
TCAGCGCACTCCGCCTGTCAAGCCGCCTCAACCTCCTCAACAGGCAAGCA
TGGCTCATGCTGAGCGGGGTCGCTGTGGCAGCAGCGACGGCGGCAGCGGC
GGAGCCGTCGTTCGACGAGCCGGCGCTACGGGAGGAGGACATCGCGTTCA
TCCAGTACACATCCGGGTCGACGGCCGAGCCGAAAGGGGTAATGATCTCC
TTCGCCAACCTCTACCACCAACTGACGCTGGACTATCACCGCCGCGGCGT
CGCGCCGGACGGCCCGCCGCTCGGCCGACGGCGCGGGCTGGTGGGTGTGT
CATGGCTGCCGCAGTATCATGACATGGGGCTGATCGTGGCGACGCTGGCG
CCCTTCTGTGGCGGCTACCGCATGCATTACGCGTCGCCGATGGCGTTCGT
GCGGCGGCCACCGCTGTGGGTGCAGCTCATGAGCCGGGTCAAGGCTCACT
GGTCGGTCGCGCCCGACTTTGCGTTCAAACTAACGGCCCGCAAGTTCCTG
GCGGTGCAGCAGCAGCAGCAGCGCGTGGACGAGCCGGCGCTGGACTTGAG
CAACATCTACTTCGTGTCGAGCGGGGGGGAGCCGTTGCGGGCGGACTCGG
TCAAGGCATTTGCCGACGCCTTCCGTCCGCACGGCCTCCGGGAGCGCTGG
TAA
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