mRNA_P-wetherbeei_contig7979.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7979.1.1
Unique NamemRNA_P-wetherbeei_contig7979.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: A0A835Z6M8_9STRA (Cilia- and flagella-associated protein 52 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M8_9STRA)

HSP 1 Score: 180 bits (456), Expect = 9.440e-51
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    7 GSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGYQAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            G  G V GGL VTPCG Y VYPLG +++VR+L GG  AFLEGH++++ CVAMS DG+ LATGQ+NH GVKADV +WD+  AVR+ ++   +  GVL  R RQH+G VQ LDFS DGRYLATLGGQDDN++VVWD+  G
Sbjct:   17 GFSGHVLGGLKVTPCGNYTVYPLGKMMIVRSLTGGKTAFLEGHTNDICCVAMSPDGKRLATGQVNHPGVKADVCIWDMSRAVRNCDSHDPHGAGVLLSRFRQHLGKVQCLDFSCDGRYLATLGGQDDNTLVVWDIDTG 154          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: D7FQG4_ECTSI (Cilia- and flagella-associated protein 52 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG4_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.160e-47
Identity = 81/139 (58.27%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    7 GSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKG-GYQAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            G  GKV GG+ +TPCGGY+VYPLGS++VVR++ G   QAFLEGH+  +SCVAMS DG  + +GQ NH GVKAD+ VWDL  A  + +A   +  GVL HRL+QH+G V+A+DFS+DG+Y A+LGGQDDNS+V+W+   G
Sbjct:   18 GFTGKVLGGMKLTPCGGYMVYPLGSILVVRSMTGKNKQAFLEGHTSEISCVAMSSDGTRIVSGQANHMGVKADLCVWDLIQAQANCDAEKPSGAGVLLHRLKQHLGHVRAVDFSFDGKYFASLGGQDDNSVVIWEAKTG 156          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: A0A6V1NYK3_HETAK (Cilia- and flagella-associated protein 52 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NYK3_HETAK)

HSP 1 Score: 158 bits (400), Expect = 9.890e-43
Identity = 77/140 (55.00%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    1 LAGSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGYQAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            + G  G+V  GL   PCG YIVYPLGS++V+R L+   Q+FLEGH+  V+C+A+S DG  LA+GQ +H+GVKADVIVWDL  A  +   G  +A G + HRL QH+G VQA+DFS D ++L TLGG+DDN++VVW+ A G
Sbjct:   15 VIGFSGEVPDGLKYLPCGEYIVYPLGSIIVLRHLQENKQSFLEGHTQGVTCLAVSHDGTRLASGQTHHSGVKADVIVWDLEKAKENCRNGTPSAGGEVVHRLFQHLGKVQAVDFSCDDQFLLTLGGRDDNALVVWEAATG 154          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: A0A7S3H4V8_9STRA (Cilia- and flagella-associated protein 52 (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4V8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.190e-37
Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    1 LAGSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGYQAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNA-EGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            + G  GKV   L  TPCG YIVYPLGS VV++ +    +AF +GH+  +SCV +S DG  LA+GQ+N  GVKADVI+WDL  A +  ++GV    +    +RL+QH+G VQ + FS +  YLAT+GGQDDN+IVVWD  +G
Sbjct:   10 VIGFNGKVNNALVYTPCGKYIVYPLGSFVVLKNMVTEKEAFFDGHTSEISCVTVSADGNRLASGQINLMGVKADVIIWDLAQAKKLLDSGVVMVGDSTCIYRLKQHLGRVQDVSFSPNNAYLATIGGQDDNTIVVWDAESG 150          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: F0Y0S5_AURAN (Cilia- and flagella-associated protein 52 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0S5_AURAN)

HSP 1 Score: 133 bits (334), Expect = 1.700e-33
Identity = 75/149 (50.34%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    1 LAGSPGKVTGGLHVTPCGG------YIVYPLGSVVVVRALKGGYQA---FLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            + G  G V  G+HV           +I+YPLGS+VVVR    G +A   FL+GHS++VSC+ +S DGR LA+GQ +H GV ADVIVWDL  A   A AG   +E VL HRLRQH G VQA+  +     LATLGG+DDN++V+WD+ +G
Sbjct:   15 IIGFSGSVQDGVHVVRSEHLPGSREWIIYPLGSLVVVRQTGTGSRAVVAFLQGHSNDVSCLCVSGDGRRLASGQDSHQGVAADVIVWDLVEACEGALAGESASEKVLLHRLRQHKGSVQAVGINSTDSLLATLGGRDDNALVIWDLESG 163          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: A0A7S0D1I4_MICPS (Cilia- and flagella-associated protein 52 (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D1I4_MICPS)

HSP 1 Score: 131 bits (329), Expect = 4.900e-33
Identity = 71/141 (50.35%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    1 LAGSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGY-QAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            + G  GKV GGL + P G  + YPLG+ +VV+ L   Y Q+FL+GH+  VSC+A+SRDG FLA+GQ+ + G  AD+IVWDL            +A  V+ HR+  H   V  L FS+DGRYLA+LGGQDDNS+V+WDV  G
Sbjct:   12 VVGFAGKVGGGLVLHPNGKTMAYPLGATIVVKELGDTYSQSFLQGHNDEVSCLAISRDGAFLASGQITNMGFSADIIVWDL------------HARSVV-HRMSLHKVKVAELSFSHDGRYLASLGGQDDNSLVIWDVETG 139          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: A0A812YS87_9DINO (Cilia- and flagella-associated protein 52 n=5 Tax=Sar TaxID=2698737 RepID=A0A812YS87_9DINO)

HSP 1 Score: 130 bits (328), Expect = 1.210e-32
Identity = 66/135 (48.89%), Postives = 94/135 (69.63%), Query Frame = 1
Query:   16 GKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGYQAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            G+V  GL   P G +++YPLGS VVV+ L+   QAFL+GH+  V+CVA+SRDG+ +A+GQ    G +A V+VWD  +AVR+A     +  G L H+L  H   V+ + F+ DG +LA+LGG+DDN+IV+WD+AAG
Sbjct:   55 GRVPSGLIYHPDGEHVIYPLGSTVVVKNLRKNTQAFLQGHTDRVTCVAISRDGKRIASGQRTSMGFRAPVMVWDFDSAVRNANT--IDRTGELIHKLVLHKVMVRDVSFNCDGSFLASLGGEDDNTIVIWDLAAG 187          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: K0S6T1_THAOC (Cilia- and flagella-associated protein 52 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6T1_THAOC)

HSP 1 Score: 130 bits (327), Expect = 1.510e-32
Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    7 GSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGYQAFLE-GHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            G  G + GGLH  PCG ++V+PLGSV V+++L    Q FL+ G   NVSCVA+S DGR+LA G    A  KA+V+VWDL   +R+       ++  + H L QH   V+++DFS DGR+LATLGG DDN +VVWD   G
Sbjct:   15 GFTGSICGGLHYLPCGKFVVFPLGSVAVLKSLSTKKQYFLDAGVDKNVSCVAISGDGRYLACGHETTASFKAEVLVWDLNRVLRAYAKNEELSKDCVLHTLFQHYKRVESVDFSCDGRHLATLGGLDDNDLVVWDCETG 153          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: A0A7S0VJE7_9CHLO (Cilia- and flagella-associated protein 52 n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VJE7_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 9.330e-32
Identity = 68/141 (48.23%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 LAGSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGY-QAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            + G  G+V GGL   P G  ++YPLGS +V+R       Q FL+GHS  VSC+A+S+ G++LA+GQ+ + G  AD+I+WDL                 L HRL  H   +QALDFSYD RYLA+LGGQDDNS+V+WDV +G
Sbjct:   10 VIGFGGQVEGGLVAHPDGRTLIYPLGSTIVLRDKDDSKSQEFLQGHSDKVSCLALSKSGKYLASGQVTYMGFTADIIIWDLETKQ-------------LVHRLSLHKVKIQALDFSYDERYLASLGGQDDNSLVLWDVQSG 137          
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Match: F0YDJ7_AURAN (Cilia- and flagella-associated protein 52 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDJ7_AURAN)

HSP 1 Score: 125 bits (314), Expect = 8.840e-31
Identity = 72/142 (50.70%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    7 GSPGKVTGGLHVTPCGG--YIVYPLGSVVVVR-ALKGGYQAFLEGHSHNVSCVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAV-RSAEAGVFNAEGVLSHRLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG 420
            G  G V GGLH     G  +I +PLG++VVV+ A +    AFL+GHS +VSCVA+S D R LA+GQ N  GV+A V++WDL  A  R  + G  +      H LRQH+ GVQAL FS D R LAT+GG+DDNS+V+WD   G
Sbjct:   17 GFSGGVLGGLHAVSYRGEPFITFPLGAMVVVKHATRKEGVAFLQGHSRSVSCVAVSHDCRMLASGQTNQLGVEAPVMLWDLEEACERVLQGGAGHGSLGPVHVLRQHLAGVQALSFSCDDRSLATIGGRDDNSLVIWDTRTG 158          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7979.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6M8_9STRA9.440e-5162.32Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
D7FQG4_ECTSI2.160e-4758.27Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A6V1NYK3_HETAK9.890e-4355.00Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A7S3H4V8_9STRA5.190e-3751.06Cilia- and flagella-associated protein 52 (Fragmen... [more]
F0Y0S5_AURAN1.700e-3350.34Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A7S0D1I4_MICPS4.900e-3350.35Cilia- and flagella-associated protein 52 (Fragmen... [more]
A0A812YS87_9DINO1.210e-3248.89Cilia- and flagella-associated protein 52 n=5 Tax=... [more]
K0S6T1_THAOC1.510e-3248.92Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A7S0VJE7_9CHLO9.330e-3248.23Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
F0YDJ7_AURAN8.840e-3150.70Cilia- and flagella-associated protein 52 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7979contigP-wetherbeei_contig7979:2193..2923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQG4
Preferred nameWDR16
PFAMsWD40
Model size420
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.54e-48
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
Cds size420
COG categoryB
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.0548847-CDS-P-wetherbeei_contig7979:2192..25361683187013.0548847-CDS-P-wetherbeei_contig7979:2192..2536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7979 2193..2536 +
1683187013.0671034-CDS-P-wetherbeei_contig7979:2847..29231683187013.0671034-CDS-P-wetherbeei_contig7979:2847..2923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7979 2848..2923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7979.1.1prot_P-wetherbeei_contig7979.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7979 2193..2923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7979.1.1

>prot_P-wetherbeei_contig7979.1.1 ID=prot_P-wetherbeei_contig7979.1.1|Name=mRNA_P-wetherbeei_contig7979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
LAGSPGKVTGGLHVTPCGGYIVYPLGSVVVVRALKGGYQAFLEGHSHNVS
CVAMSRDGRFLATGQMNHAGVKADVIVWDLPAAVRSAEAGVFNAEGVLSH
RLRQHMGGVQALDFSYDGRYLATLGGQDDNSIVVWDVAAG
back to top

mRNA from alignment at P-wetherbeei_contig7979:2193..2923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7979.1.1 ID=mRNA_P-wetherbeei_contig7979.1.1|Name=mRNA_P-wetherbeei_contig7979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=731bp|location=Sequence derived from alignment at P-wetherbeei_contig7979:2193..2923+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGGCTCTCCAGGCAAGGTCACGGGCGGGTTGCACGTGACCCCGTG CGGGGGCTACATCGTATACCCCCTTGGCAGCGTCGTGGTGGTGCGCGCGC TCAAGGGCGGTTACCAGGCCTTCCTCGAGGGGCACTCGCACAACGTGTCG TGCGTCGCCATGTCGCGCGACGGCCGCTTCCTCGCGACGGGTCAAATGAA CCACGCGGGCGTCAAAGCGGACGTGATCGTGTGGGACCTGCCGGCGGCCG TCCGGAGCGCCGAGGCCGGCGTCTTCAACGCCGAGGGCGTGCTGAGCCAC CGCTTGCGGCAGCATATGGGGGGCGTGCAGGCTCTCGACTTTAGGTGCGC TCGTTTTCAAGAAGCGCTATGCTTGCCGAAATTCGGAGGCAGAAAGGGCT TGTCTTGCCATTTTTCCTCTGACCGAAATATGCTTTCCTCGAGGAGCAAC CCAGGTACTTCGCGAGCGTACCATTGGTGCTATGCACGCAATCCGTCGGG AGTTTGGAGATAATTTACCATGCCATTTTCTCCCATTCTCACCGTCTTTC AGCCTTGTGACAACCATAGCCGTCATTGAGCTCCAGTGCGTTCCCTTCCG GCGGTTGCGCACGGCGCCGCTGCCTCTTTCCTTGCCACCACATACATACA CACAGCTACGACGGGCGCTACCTAGCGACGCTGGGCGGGCAGGACGACAA CTCGATCGTGGTATGGGACGTCGCCGCGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7979:2193..2923+

>mRNA_P-wetherbeei_contig7979.1.1 ID=mRNA_P-wetherbeei_contig7979.1.1|Name=mRNA_P-wetherbeei_contig7979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig7979:2193..2923+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGGCTCTCCAGGCAAGGTCACGGGCGGGTTGCACGTGACCCCGTG
CGGGGGCTACATCGTATACCCCCTTGGCAGCGTCGTGGTGGTGCGCGCGC
TCAAGGGCGGTTACCAGGCCTTCCTCGAGGGGCACTCGCACAACGTGTCG
TGCGTCGCCATGTCGCGCGACGGCCGCTTCCTCGCGACGGGTCAAATGAA
CCACGCGGGCGTCAAAGCGGACGTGATCGTGTGGGACCTGCCGGCGGCCG
TCCGGAGCGCCGAGGCCGGCGTCTTCAACGCCGAGGGCGTGCTGAGCCAC
CGCTTGCGGCAGCATATGGGGGGCGTGCAGGCTCTCGACTTTAGCTACGA
CGGGCGCTACCTAGCGACGCTGGGCGGGCAGGACGACAACTCGATCGTGG
TATGGGACGTCGCCGCGGGC
back to top