mRNA_P-wetherbeei_contig7974.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7974.1.1
Unique NamemRNA_P-wetherbeei_contig7974.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7974.1.1 vs. uniprot
Match: A0A835Z0N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.190e-16
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:    1 PACQRRVQRYTAYPEHPMLTLERTVDAFVLFVHTRTDRLTRHRLLKNHMDEYKLKIRDDSCFCSEFINGQIDVDVDEVATTMAITAQLF-SYGHKAWSMLVDEYEALLESRVMQEFLSW 354
            PAC RRV+R+     H  +    T    V F  TR D + R  LL+  MD+  L+IRDDS FC+ FI+G +DVD +EVA  M ITA LF S+GH A+S    + EA     V +   SW
Sbjct:  257 PACARRVKRFM---RHIRIDAAETAAKIVAFHRTRGDAVARRALLQAAMDKQHLEIRDDSDFCASFISGDVDVDPEEVAAIMDITAYLFDSWGHVAYSKCSLQAEAACLHEVFECGKSW 372
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7974.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0N9_9STRA7.190e-1643.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7974contigP-wetherbeei_contig7974:199..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-209
Ec32 orthologEc-06_004920.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.958223-CDS-P-wetherbeei_contig7974:198..5641683187012.958223-CDS-P-wetherbeei_contig7974:198..564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7974 199..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7974.1.1prot_P-wetherbeei_contig7974.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7974 199..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7974.1.1

>prot_P-wetherbeei_contig7974.1.1 ID=prot_P-wetherbeei_contig7974.1.1|Name=mRNA_P-wetherbeei_contig7974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
PACQRRVQRYTAYPEHPMLTLERTVDAFVLFVHTRTDRLTRHRLLKNHMD
EYKLKIRDDSCFCSEFINGQIDVDVDEVATTMAITAQLFSYGHKAWSMLV
DEYEALLESRVMQEFLSWKDAL
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mRNA from alignment at P-wetherbeei_contig7974:199..564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7974.1.1 ID=mRNA_P-wetherbeei_contig7974.1.1|Name=mRNA_P-wetherbeei_contig7974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig7974:199..564- (Phaeothamnion wetherbeei SAG_119_79)
CCTGCTTGCCAGCGACGTGTGCAGCGCTACACGGCTTATCCGGAACATCC
AATGTTGACCTTGGAAAGAACCGTGGATGCCTTCGTTCTCTTTGTACATA
CTCGGACGGATCGACTAACCAGACACAGACTGTTGAAGAATCACATGGAT
GAGTACAAATTAAAAATTCGAGATGATTCATGCTTTTGTTCAGAATTTAT
AAATGGTCAAATTGACGTTGACGTTGACGAGGTGGCAACAACTATGGCAA
TTACCGCACAACTGTTTTCTTATGGCCACAAGGCTTGGTCAATGCTCGTT
GATGAGTACGAAGCTTTATTGGAAAGTCGGGTGATGCAAGAGTTTCTGAG
CTGGAAAGATGCTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7974:199..564-

>mRNA_P-wetherbeei_contig7974.1.1 ID=mRNA_P-wetherbeei_contig7974.1.1|Name=mRNA_P-wetherbeei_contig7974.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig7974:199..564- (Phaeothamnion wetherbeei SAG_119_79)
CCTGCTTGCCAGCGACGTGTGCAGCGCTACACGGCTTATCCGGAACATCC
AATGTTGACCTTGGAAAGAACCGTGGATGCCTTCGTTCTCTTTGTACATA
CTCGGACGGATCGACTAACCAGACACAGACTGTTGAAGAATCACATGGAT
GAGTACAAATTAAAAATTCGAGATGATTCATGCTTTTGTTCAGAATTTAT
AAATGGTCAAATTGACGTTGACGTTGACGAGGTGGCAACAACTATGGCAA
TTACCGCACAACTGTTTTCTTATGGCCACAAGGCTTGGTCAATGCTCGTT
GATGAGTACGAAGCTTTATTGGAAAGTCGGGTGATGCAAGAGTTTCTGAG
CTGGAAAGATGCTCTC
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