mRNA_P-wetherbeei_contig12920.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12920.2.1
Unique NamemRNA_P-wetherbeei_contig12920.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12920.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12920contigP-wetherbeei_contig12920:1546..1806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog272952.HpaP813991
PFAMsATP-synt_10
Model size261
Max annot lvl4776|Peronosporales
KEGG koko:K18192
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.59e-05
EggNOG OGsKOG4614@1|root,KOG4614@2759|Eukaryota,3Q7NW@4776|Peronosporales
DescriptionATP10 protein
Cds size234
COG categoryO
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.6072807-UTR-P-wetherbeei_contig12920:1545..15721683185966.6072807-UTR-P-wetherbeei_contig12920:1545..1572Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12920 1546..1572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.6206975-CDS-P-wetherbeei_contig12920:1572..18061683185966.6206975-CDS-P-wetherbeei_contig12920:1572..1806Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12920 1573..1806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12920.2.1prot_P-wetherbeei_contig12920.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12920 1573..1806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12920.2.1

>prot_P-wetherbeei_contig12920.2.1 ID=prot_P-wetherbeei_contig12920.2.1|Name=mRNA_P-wetherbeei_contig12920.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MVREGGHEGRIFPADSALVPPEAALPVPPFQAQPLNGGPSVDVPSAVLVG
RVTLLAVCFKQHGYSMLPAWRQPWQGRF
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mRNA from alignment at P-wetherbeei_contig12920:1546..1806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12920.2.1 ID=mRNA_P-wetherbeei_contig12920.2.1|Name=mRNA_P-wetherbeei_contig12920.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig12920:1546..1806+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCCACTGGTTCGAGTACGAAGACATGGTCCGTGAGGGCGGCCATGA
AGGCCGGATCTTCCCGGCGGACTCCGCCCTCGTGCCACCGGAGGCAGCGC
TCCCGGTGCCGCCCTTCCAGGCGCAGCCGCTTAACGGCGGGCCCTCCGTG
GACGTGCCTTCGGCCGTGCTGGTCGGCCGCGTAACGCTCTTGGCCGTCTG
CTTCAAGCAGCACGGCTACAGCATGCTGCCGGCCTGGCGGCAGCCCTGGC
AGGGGCGCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12920:1546..1806+

>mRNA_P-wetherbeei_contig12920.2.1 ID=mRNA_P-wetherbeei_contig12920.2.1|Name=mRNA_P-wetherbeei_contig12920.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig12920:1546..1806+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCGTGAGGGCGGCCATGAAGGCCGGATCTTCCCGGCGGACTCCGC
CCTCGTGCCACCGGAGGCAGCGCTCCCGGTGCCGCCCTTCCAGGCGCAGC
CGCTTAACGGCGGGCCCTCCGTGGACGTGCCTTCGGCCGTGCTGGTCGGC
CGCGTAACGCTCTTGGCCGTCTGCTTCAAGCAGCACGGCTACAGCATGCT
GCCGGCCTGGCGGCAGCCCTGGCAGGGGCGCTTT
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