mRNA_P-wetherbeei_contig7892.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7892.1.1
Unique NamemRNA_P-wetherbeei_contig7892.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A1F4F2N0_9PROT (Primosomal replication protein N n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F2N0_9PROT)

HSP 1 Score: 121 bits (304), Expect = 6.340e-34
Identity = 65/97 (67.01%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    7 NQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            N+V LSG+L+ELG LRYTPAG+  +EF I+HESE+ EAG  R+V AEV A+AF+  AR VA A LG ALRA GFLAA+S+RS K+VLHVTDIEF+EG
Sbjct:    2 NRVELSGSLIELGKLRYTPAGLAVLEFRIQHESEQGEAGATRKVSAEVVAMAFEAQARLVAGARLGAALRAGGFLAAKSRRSKKLVLHVTDIEFIEG 98          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A521YWE5_9PROT (Primosomal replication protein N n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YWE5_9PROT)

HSP 1 Score: 121 bits (304), Expect = 6.340e-34
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    7 NQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            N+V LSG L+ELGALRYTPAG+PAVEF +RHESE+ EAG+ R+V AE+  +AF+  AR +AAA L T LR  GFL A+S+RS K+VLHVT++EF+EG
Sbjct:    2 NRVELSGRLLELGALRYTPAGIPAVEFKLRHESEQGEAGSRRRVEAEIGGIAFEAQARLLAAAKLNTELRLHGFLGAKSKRSRKLVLHVTNVEFVEG 98          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A537BS43_9PROT (Primosomal replication protein N n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BS43_9PROT)

HSP 1 Score: 121 bits (303), Expect = 5.230e-33
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:    7 NQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            N+V L G L+ELGALRYTPAGVPAVEF +RHESER EAG +R++ AE+A +AF+  AR +A A L T +   GFLAA+S+RS K+VLHVT++EF+EG
Sbjct:   62 NRVELRGKLIELGALRYTPAGVPAVEFSLRHESERDEAGAKRRINAEIAGIAFEAQARLLAKASLNTEIELHGFLAAKSRRSKKLVLHVTNVEFIEG 158          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A536XUB0_9PROT (Primosomal replication protein N n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XUB0_9PROT)

HSP 1 Score: 106 bits (265), Expect = 5.470e-28
Identity = 54/97 (55.67%), Postives = 78/97 (80.41%), Query Frame = 1
Query:    7 NQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            N++ LSG L+ELG LR+TPAGV A+EF + HESE  EAG +R+V+AE+ A+AF+  AR VA   LG+A+  +GFL+A+S+R+ +++LHVT+IEF+EG
Sbjct:    2 NRLELSGRLLELGPLRHTPAGVAALEFKLVHESELEEAGVKRKVQAEIGAIAFEAQARLVAGRPLGSAVNVQGFLSAKSRRAKRLMLHVTNIEFVEG 98          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A537ALY4_9PROT (Primosomal replication protein N n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537ALY4_9PROT)

HSP 1 Score: 106 bits (265), Expect = 5.790e-28
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 AANQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            A N++ LSG L+E GALR+TPAG+ AVEF + HESE+ EAG  R+V AE+ A+AF+  AR +A   LG+ +R +GFL+A+S+RS K++LHVT+IEF+EG
Sbjct:    2 AQNRLELSGRLLERGALRHTPAGLAAVEFKLAHESEQDEAGGRRKVVAEIGAVAFEAQARLIAGRPLGSEVRLQGFLSAKSKRSKKLMLHVTNIEFVEG 100          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: UPI0019A32CBE (Primosomal replication protein N n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A32CBE)

HSP 1 Score: 105 bits (261), Expect = 2.160e-27
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   19 LSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFME 294
            +SG + EL +LRYTPAGVP VEF + HESER EAG+ R+V AE+ A+AF+  AR +AA  +G  L AEGFL A+++RS K VLHVT IEF+E
Sbjct:    1 MSGVVTELQSLRYTPAGVPVVEFRLAHESERAEAGSRRKVNAEIDAVAFEAQARLLAAGPMGRLLIAEGFLCAKNRRSRKPVLHVTSIEFIE 92          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A1F4C7V6_9PROT (Primosomal replication protein N n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4C7V6_9PROT)

HSP 1 Score: 104 bits (259), Expect = 4.600e-27
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    7 NQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEGV 300
            N++ LSG L+EL ALRYTPAG+P V F + H SE++EAG +R V+ EVA LAF+  AR +AA   G  ++  GFLA +S+ S ++VLH T+IEF+EGV
Sbjct:    3 NKIVLSGNLIELDALRYTPAGIPVVNFRLSHASEQIEAGDKRAVQCEVAGLAFEREARLIAAVRPGMQVKITGFLAGKSRDSKQLVLHATNIEFVEGV 100          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A0S8AWE4_9PROT (Primosomal replication protein N n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AWE4_9PROT)

HSP 1 Score: 104 bits (260), Expect = 5.120e-27
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    7 NQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            N+V L+G L+E  ALR TPAG+  + F + HES+ +EAG +R+VRAEV A+AF+  AR +A  GL TAL  EGFL ARS+RS ++VLHVT +EF EG
Sbjct:   19 NRVRLAGRLIERDALRQTPAGIDVIAFRVLHESQAMEAGGQREVRAEVDAVAFEGQARLLAGCGLDTALAVEGFLCARSRRSKRLVLHVTKLEFSEG 115          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A536XS54_9PROT (Primosomal replication protein N n=7 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XS54_9PROT)

HSP 1 Score: 100 bits (248), Expect = 2.290e-25
Identity = 52/98 (53.06%), Postives = 74/98 (75.51%), Query Frame = 1
Query:    4 ANQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEG 297
            AN+V ++G L+EL ALR+TPAGVP ++F ++H+S + EAG ER+V  E+AA+AF+  A+ +AAA LG+ ++  GFLAARS+ S   +LH T IEF EG
Sbjct:    4 ANRVTVAGRLIELDALRHTPAGVPMLKFRLQHDSVQTEAGGERKVSFEIAAVAFEREAKLLAAAKLGSRVKVNGFLAARSRSSRTPLLHATQIEFAEG 101          
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Match: A0A1F3YQV4_9PROT (Primosomal replication protein N n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YQV4_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 1.980e-24
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    4 ANQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEVAALAFDTVARQVAAA----GLGTALRAEGFLAARSQRSAKVVLHVTDIEFM 291
            AN+V +SG +  L ALR+TPAGVP +EF ++H SER EAG  R+V AE+ A+AF+  A  +AA      LG  L+AEGFL A+S++S K VLHVT+IEFM
Sbjct:    5 ANRVEISGVVTGLQALRHTPAGVPVIEFRLKHASERAEAGALRKVNAEIDAVAFEAQALLLAAGFSKPALGRLLKAEGFLCAKSRQSKKPVLHVTNIEFM 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7892.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4F2N0_9PROT6.340e-3467.01Primosomal replication protein N n=1 Tax=Betaprote... [more]
A0A521YWE5_9PROT6.340e-3463.92Primosomal replication protein N n=2 Tax=unclassif... [more]
A0A537BS43_9PROT5.230e-3362.89Primosomal replication protein N n=2 Tax=Betaprote... [more]
A0A536XUB0_9PROT5.470e-2855.67Primosomal replication protein N n=1 Tax=Betaprote... [more]
A0A537ALY4_9PROT5.790e-2856.57Primosomal replication protein N n=1 Tax=Betaprote... [more]
UPI0019A32CBE2.160e-2759.78Primosomal replication protein N n=1 Tax=Candidatu... [more]
A0A1F4C7V6_9PROT4.600e-2754.08Primosomal replication protein N n=2 Tax=unclassif... [more]
A0A0S8AWE4_9PROT5.120e-2756.70Primosomal replication protein N n=1 Tax=Betaprote... [more]
A0A536XS54_9PROT2.290e-2553.06Primosomal replication protein N n=7 Tax=Betaprote... [more]
A0A1F3YQV4_9PROT1.980e-2455.00Primosomal replication protein N n=1 Tax=Betaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7892contigP-wetherbeei_contig7892:129..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1288494.EBAPG3_25770
Preferred namepriB
PFAMsSSB
Model size306
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02686
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.01e-22
EggNOG OGsCOG2965@1|root,COG2965@2|Bacteria,1QAGQ@1224|Proteobacteria,2WAH5@28216|Betaproteobacteria,373M9@32003|Nitrosomonadales
DescriptionBinds single-stranded DNA at the primosome assembly site (PAS)
Cds size306
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.1652837-CDS-P-wetherbeei_contig7892:128..4341683187007.1652837-CDS-P-wetherbeei_contig7892:128..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7892 129..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7892.1.1prot_P-wetherbeei_contig7892.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7892 129..434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7892.1.1

>prot_P-wetherbeei_contig7892.1.1 ID=prot_P-wetherbeei_contig7892.1.1|Name=mRNA_P-wetherbeei_contig7892.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
AANQVALSGTLVELGALRYTPAGVPAVEFLIRHESERVEAGTERQVRAEV
AALAFDTVARQVAAAGLGTALRAEGFLAARSQRSAKVVLHVTDIEFMEGV
L*
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mRNA from alignment at P-wetherbeei_contig7892:129..434-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7892.1.1 ID=mRNA_P-wetherbeei_contig7892.1.1|Name=mRNA_P-wetherbeei_contig7892.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig7892:129..434- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCAACCAGGTCGCATTGAGCGGGACACTCGTGGAACTCGGCGCATT GCGCTACACGCCGGCCGGCGTTCCGGCCGTCGAGTTCCTGATCCGGCACG AATCCGAGAGGGTCGAGGCCGGGACGGAGCGCCAGGTGAGGGCCGAAGTG GCCGCACTGGCGTTCGACACGGTGGCCAGGCAGGTGGCAGCGGCGGGTCT GGGGACGGCTTTGAGGGCCGAGGGCTTCCTGGCAGCAAGGAGCCAGCGCA GCGCGAAGGTCGTGCTGCACGTAACCGACATCGAATTCATGGAAGGAGTA CTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7892:129..434-

>mRNA_P-wetherbeei_contig7892.1.1 ID=mRNA_P-wetherbeei_contig7892.1.1|Name=mRNA_P-wetherbeei_contig7892.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig7892:129..434- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCAACCAGGTCGCATTGAGCGGGACACTCGTGGAACTCGGCGCATT
GCGCTACACGCCGGCCGGCGTTCCGGCCGTCGAGTTCCTGATCCGGCACG
AATCCGAGAGGGTCGAGGCCGGGACGGAGCGCCAGGTGAGGGCCGAAGTG
GCCGCACTGGCGTTCGACACGGTGGCCAGGCAGGTGGCAGCGGCGGGTCT
GGGGACGGCTTTGAGGGCCGAGGGCTTCCTGGCAGCAAGGAGCCAGCGCA
GCGCGAAGGTCGTGCTGCACGTAACCGACATCGAATTCATGGAAGGAGTA
CTTTGA
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