mRNA_P-wetherbeei_contig7797.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7797.1.1
Unique NamemRNA_P-wetherbeei_contig7797.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A6A7M1E0_9PROT (Superoxide dismutase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M1E0_9PROT)

HSP 1 Score: 253 bits (645), Expect = 1.080e-83
Identity = 127/162 (78.40%), Postives = 139/162 (85.80%), Query Frame = 1
Query:   49 GCLASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            GCL SL A AQTA    +AALKDA GK+VG+V L+Q P GVLLKM+LKG P G+RAFHIHAVGKCEPPF SAGPHFNP N KHG+ A +GAHAGDMPNLHIPA+GELV+EIANPMISL KGQ NS+FDADGSAIVIHA ADDYKSDPAGNAGDRI CGV+ E
Sbjct:    3 GCLMSLPAHAQTA----KAALKDARGKEVGQVQLIQTPHGVLLKMALKGAPPGERAFHIHAVGKCEPPFTSAGPHFNPANHKHGMEAKEGAHAGDMPNLHIPANGELVIEIANPMISLAKGQPNSLFDADGSAIVIHAGADDYKSDPAGNAGDRIICGVVSE 160          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A512NSI0_9HYPH (Superoxide dismutase [Cu-Zn] n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NSI0_9HYPH)

HSP 1 Score: 249 bits (635), Expect = 5.220e-82
Identity = 123/161 (76.40%), Postives = 138/161 (85.71%), Query Frame = 1
Query:   52 CLASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            CL SL A AQTA    +A+LKDA GKDVG+V L Q P GVLLKMSLKG P G+RAFHIHAVGKCEPPF SAGPHFNP + KHG+ A +G+HAGDMPNLHIPASGELV+EIANPMISLVKGQ NS+FDADGSAI+IHA +DDYK+DP GNAGDR+ACGV+ E
Sbjct:   15 CLLSLPAYAQTA----KASLKDAQGKDVGQVQLTQTPHGVLLKMSLKGAPPGERAFHIHAVGKCEPPFTSAGPHFNPASHKHGLEAKEGSHAGDMPNLHIPASGELVIEIANPMISLVKGQPNSLFDADGSAIIIHAGSDDYKTDPTGNAGDRVACGVVTE 171          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A1H8WTK9_9PROT (Superoxide dismutase [Cu-Zn] n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8WTK9_9PROT)

HSP 1 Score: 241 bits (616), Expect = 4.080e-79
Identity = 119/160 (74.38%), Postives = 137/160 (85.62%), Query Frame = 1
Query:   55 LASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            L +L A AQTA    +A+LKDA GKDVG+V L Q P GVLLKM+LKG PAG+RAFHIH+VGKCEPPF SAGPHFNP + KHG+ A +G+HAGDMPNLHIP +G+LV+EIANPMISLVKGQ NS+FDADGSAI+IHA ADDYK+DP GNAGDRIACGV+ E
Sbjct:   16 LMALPAHAQTA----KASLKDAQGKDVGQVQLTQTPHGVLLKMTLKGAPAGERAFHIHSVGKCEPPFTSAGPHFNPASHKHGMEAKEGSHAGDMPNLHIPMNGDLVIEIANPMISLVKGQPNSLFDADGSAIIIHAGADDYKTDPTGNAGDRIACGVVTE 171          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A521RMF5_9HYPH (Superoxide dismutase [Cu-Zn] n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521RMF5_9HYPH)

HSP 1 Score: 238 bits (607), Expect = 7.810e-78
Identity = 119/158 (75.32%), Postives = 136/158 (86.08%), Query Frame = 1
Query:   61 SLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            SL A+AQ+   TA+A+LKDA+GKDVG V LVQ P GVLLKM+LKG   G+ AFHIHAVGKCE PF SAG HFNP +KKHG+ AA+G+HAGDMPNLHIPA+GEL +EIANPM+SLVKGQANSVFDADGSAI+IHA  DDY++DP GNAGDRIACGVI E
Sbjct:   10 SLSARAQSP--TAKASLKDAAGKDVGSVQLVQTPHGVLLKMALKGAVPGEHAFHIHAVGKCEAPFTSAGGHFNPASKKHGMEAAEGSHAGDMPNLHIPANGELTIEIANPMVSLVKGQANSVFDADGSAIIIHAGVDDYRTDPTGNAGDRIACGVITE 165          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A1D2TKQ3_9BURK (Superoxide dismutase [Cu-Zn] n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A1D2TKQ3_9BURK)

HSP 1 Score: 233 bits (595), Expect = 7.080e-76
Identity = 120/176 (68.18%), Postives = 138/176 (78.41%), Query Frame = 1
Query:    7 ISRLMTCSLVALVAGCLASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            I R +    V    G  ASL A AQTA    +AALKDA GK+VG V L+Q P GVLLKM+LKG   G+ AFHIHAVGKCEPPF SAG HFNP +KKHG+ A +GAHAGDMPNL++PA+GEL V++AN M++L KGQ NSVFDADGSAI+IHA ADDYK+DP GNAGDRIACGVIVE
Sbjct:    3 IGRFVAALSVVCTLGVAASLPAHAQTA----KAALKDAGGKEVGTVQLIQTPHGVLLKMALKGVAPGEHAFHIHAVGKCEPPFTSAGGHFNPASKKHGMEAKEGAHAGDMPNLYVPANGELTVDVANHMVTLAKGQPNSVFDADGSAIIIHAGADDYKTDPTGNAGDRIACGVIVE 174          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A521L3S3_9HYPH (Superoxide dismutase [Cu-Zn] n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521L3S3_9HYPH)

HSP 1 Score: 232 bits (592), Expect = 1.890e-75
Identity = 112/147 (76.19%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   94 TARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            TA+AALKDA+GKDVG V L+Q P GVLL+MSLKG PAG+RAFHIHAVGKCEPPF SAG HFNP  KKHG+ A +G+HAGDMPNL +PA+GEL V++ N MI+L KGQ NSVFDADGSAIVIHA  DDYKSDP GNAGDRI CGVI E
Sbjct:   26 TAKAALKDATGKDVGTVQLIQTPHGVLLRMSLKGVPAGERAFHIHAVGKCEPPFTSAGGHFNPAGKKHGVEAKEGSHAGDMPNLFVPANGELTVDVVNHMITLAKGQPNSVFDADGSAIVIHAGPDDYKSDPTGNAGDRIVCGVITE 172          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: UPI001E4EA49C (superoxide dismutase family protein n=2 Tax=Reyranella TaxID=445219 RepID=UPI001E4EA49C)

HSP 1 Score: 231 bits (589), Expect = 5.790e-75
Identity = 121/172 (70.35%), Postives = 137/172 (79.65%), Query Frame = 1
Query:   19 MTCSLVALVAGCLASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            M C+L+A  AG   S  AQAQ+   TA+AALKDASGKDVG V LVQ P GVLL+MSLKG   G+ AFHIHAVGKCE PF SAG HFNP +KKHG+ A +GAHAGDMPNL IPA+GEL +++AN MI+L KGQ NSVFDADGSAI+IHA  DDYK+DP GNAGDRI CGVI E
Sbjct:    6 MMCTLIA-AAGVAVSFSAQAQSP--TAKAALKDASGKDVGTVQLVQTPHGVLLRMSLKGVAPGEHAFHIHAVGKCEAPFTSAGGHFNPASKKHGMEATEGAHAGDMPNLFIPANGELRIDVANHMITLAKGQPNSVFDADGSAIIIHAGPDDYKTDPTGNAGDRIVCGVITE 174          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A259MSA2_9PROT (Superoxide dismutase [Cu-Zn] n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A259MSA2_9PROT)

HSP 1 Score: 231 bits (588), Expect = 7.950e-75
Identity = 118/170 (69.41%), Postives = 137/170 (80.59%), Query Frame = 1
Query:   25 CSLVALVAGCLASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            CSL+A       S  AQAQTA    +A+LKDA+GKDVG V L+Q P GVLLKMSLKG   G+ AFHIHAVGKCE PF SAG HFNP ++KHG+ AA+G+HAGDMPNL+IPA+GEL +++AN M+SL KGQ NSVFDADGSAI+IHA ADDYK+DP GNAGDRIACGVI E
Sbjct:    8 CSLLAATGVAAFSFSAQAQTA----KASLKDATGKDVGTVQLLQTPHGVLLKMSLKGVAPGEHAFHIHAVGKCEAPFTSAGGHFNPASRKHGMEAAEGSHAGDMPNLYIPANGELRIDVANHMVSLAKGQPNSVFDADGSAIIIHAGADDYKTDPTGNAGDRIACGVITE 173          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A1Q3L243_9PROT (Superoxide dismutase [Cu-Zn] n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3L243_9PROT)

HSP 1 Score: 229 bits (584), Expect = 3.690e-74
Identity = 116/166 (69.88%), Postives = 136/166 (81.93%), Query Frame = 1
Query:   37 ALVAGCLASLQAQAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVIVE 534
            AL  G  AS  A+AQTA    +A+LKDA+GKDVG V LVQ+P GVLLK++LKG   G+ AFHIHAVGKCEPPF SAG HFNP +KKHG+ +A+G+HAGDMPNL++PA+GEL  +IAN M++L KGQ NSVFDADGSAIVIHA  DDYK+DP GNAGDRIACGVI E
Sbjct:   16 ALSLGIAASSVAEAQTA----KASLKDATGKDVGTVQLVQMPQGVLLKLALKGVAPGEHAFHIHAVGKCEPPFTSAGGHFNPASKKHGMGSAEGSHAGDMPNLYVPANGELTADIANNMVTLAKGQPNSVFDADGSAIVIHAGVDDYKTDPTGNAGDRIACGVITE 177          
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Match: A0A363TSL6_9BRAD (Superoxide dismutase [Cu-Zn] n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TSL6_9BRAD)

HSP 1 Score: 222 bits (565), Expect = 2.430e-71
Identity = 112/165 (67.88%), Postives = 128/165 (77.58%), Query Frame = 1
Query:   40 LVAGCLASLQA--QAQTAPATARAALKDASGKDVGRVDLVQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHGIAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAIVIHAAADDYKSDPAGNAGDRIACGVI 528
            L AGCLA+  A   A  A  TA+AA+KDA GKDVG  +L Q P GVL+K+SLKG P G+ AFH+HAVGKCEPPF SAG HFNPG KKHG+  A+G HAGDMPNLHIPA G L  ++ N MI+L KG+ NSVF ADG+A+VIHA  DDYKSDPAGNAG RIACGVI
Sbjct:    7 LAAGCLAAAVALGPATAAAQTAKAAIKDAQGKDVGSAELTQTPAGVLVKVSLKGLPPGEHAFHVHAVGKCEPPFTSAGGHFNPGGKKHGLHVAEGPHAGDMPNLHIPAGGALEAQVLNTMITLEKGKPNSVFHADGTALVIHAGVDDYKSDPAGNAGGRIACGVI 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7797.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7M1E0_9PROT1.080e-8378.40Superoxide dismutase n=1 Tax=Rhodospirillales bact... [more]
A0A512NSI0_9HYPH5.220e-8276.40Superoxide dismutase [Cu-Zn] n=1 Tax=Reyranella so... [more]
A0A1H8WTK9_9PROT4.080e-7974.38Superoxide dismutase [Cu-Zn] n=1 Tax=Rhodospirilla... [more]
A0A521RMF5_9HYPH7.810e-7875.32Superoxide dismutase [Cu-Zn] n=1 Tax=Reyranella sp... [more]
A0A1D2TKQ3_9BURK7.080e-7668.18Superoxide dismutase [Cu-Zn] n=3 Tax=Proteobacteri... [more]
A0A521L3S3_9HYPH1.890e-7576.19Superoxide dismutase [Cu-Zn] n=1 Tax=Reyranella sp... [more]
UPI001E4EA49C5.790e-7570.35superoxide dismutase family protein n=2 Tax=Reyran... [more]
A0A259MSA2_9PROT7.950e-7569.41Superoxide dismutase [Cu-Zn] n=2 Tax=Rhodospirilla... [more]
A0A1Q3L243_9PROT3.690e-7469.88Superoxide dismutase [Cu-Zn] n=1 Tax=Alphaproteoba... [more]
A0A363TSL6_9BRAD2.430e-7167.88Superoxide dismutase [Cu-Zn] n=1 Tax=Bradyrhizobia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7797contigP-wetherbeei_contig7797:1135..1671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000002_gene2312
PFAMsSod_Cu
Model size537
Max annot lvl204441|Rhodospirillales
KEGG koko:K04565
KEGG Pathwayko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.73e-76
EggNOG OGsCOG2032@1|root,COG2032@2|Bacteria,1RGV4@1224|Proteobacteria,2UC22@28211|Alphaproteobacteria,2JTWE@204441|Rhodospirillales
EC1.15.1.1
DescriptionDestroys radicals which are normally produced within the cells and which are toxic to biological systems
Cds size537
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.9954708-CDS-P-wetherbeei_contig7797:1134..16711683187000.9954708-CDS-P-wetherbeei_contig7797:1134..1671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7797 1135..1671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7797.1.1prot_P-wetherbeei_contig7797.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7797 1135..1671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7797.1.1

>prot_P-wetherbeei_contig7797.1.1 ID=prot_P-wetherbeei_contig7797.1.1|Name=mRNA_P-wetherbeei_contig7797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MCISRLMTCSLVALVAGCLASLQAQAQTAPATARAALKDASGKDVGRVDL
VQIPTGVLLKMSLKGFPAGDRAFHIHAVGKCEPPFASAGPHFNPGNKKHG
IAAADGAHAGDMPNLHIPASGELVVEIANPMISLVKGQANSVFDADGSAI
VIHAAADDYKSDPAGNAGDRIACGVIVE*
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mRNA from alignment at P-wetherbeei_contig7797:1135..1671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7797.1.1 ID=mRNA_P-wetherbeei_contig7797.1.1|Name=mRNA_P-wetherbeei_contig7797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig7797:1135..1671- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTATCAGCCGATTGATGACGTGCAGCCTCGTGGCGCTGGTCGCGGG ATGCCTGGCGTCGCTTCAAGCCCAGGCCCAGACGGCGCCGGCAACGGCCA GGGCGGCGCTGAAGGATGCCAGCGGCAAGGATGTCGGGCGGGTCGACCTC GTCCAGATACCGACCGGCGTTCTCCTCAAGATGTCGCTGAAGGGTTTCCC CGCGGGCGATCGCGCCTTCCATATCCATGCGGTCGGCAAGTGCGAGCCGC CTTTCGCCAGCGCGGGGCCGCATTTCAATCCGGGCAACAAGAAGCATGGC ATTGCAGCCGCTGACGGCGCCCATGCCGGCGACATGCCCAACCTGCATAT TCCGGCGAGTGGCGAACTGGTGGTCGAGATCGCCAACCCGATGATCTCAC TCGTCAAAGGCCAAGCCAATTCGGTGTTCGATGCCGATGGCTCGGCGATC GTCATTCACGCGGCTGCCGACGACTACAAGAGCGACCCGGCCGGCAACGC CGGCGACCGCATCGCCTGCGGCGTTATCGTCGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7797:1135..1671-

>mRNA_P-wetherbeei_contig7797.1.1 ID=mRNA_P-wetherbeei_contig7797.1.1|Name=mRNA_P-wetherbeei_contig7797.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig7797:1135..1671- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTATCAGCCGATTGATGACGTGCAGCCTCGTGGCGCTGGTCGCGGG
ATGCCTGGCGTCGCTTCAAGCCCAGGCCCAGACGGCGCCGGCAACGGCCA
GGGCGGCGCTGAAGGATGCCAGCGGCAAGGATGTCGGGCGGGTCGACCTC
GTCCAGATACCGACCGGCGTTCTCCTCAAGATGTCGCTGAAGGGTTTCCC
CGCGGGCGATCGCGCCTTCCATATCCATGCGGTCGGCAAGTGCGAGCCGC
CTTTCGCCAGCGCGGGGCCGCATTTCAATCCGGGCAACAAGAAGCATGGC
ATTGCAGCCGCTGACGGCGCCCATGCCGGCGACATGCCCAACCTGCATAT
TCCGGCGAGTGGCGAACTGGTGGTCGAGATCGCCAACCCGATGATCTCAC
TCGTCAAAGGCCAAGCCAATTCGGTGTTCGATGCCGATGGCTCGGCGATC
GTCATTCACGCGGCTGCCGACGACTACAAGAGCGACCCGGCCGGCAACGC
CGGCGACCGCATCGCCTGCGGCGTTATCGTCGAATAG
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