mRNA_P-wetherbeei_contig7762.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7762.1.1
Unique NamemRNA_P-wetherbeei_contig7762.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7762.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7762contigP-wetherbeei_contig7762:52..1537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size523
Hectar predicted targeting categoryother localisation
Exons3
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186999.6469524-UTR-P-wetherbeei_contig7762:51..791683186999.6469524-UTR-P-wetherbeei_contig7762:51..79Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7762 52..79 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186999.6677916-CDS-P-wetherbeei_contig7762:79..2371683186999.6677916-CDS-P-wetherbeei_contig7762:79..237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7762 80..237 +
1683186999.6860855-CDS-P-wetherbeei_contig7762:617..7621683186999.6860855-CDS-P-wetherbeei_contig7762:617..762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7762 618..762 +
1683186999.7030466-CDS-P-wetherbeei_contig7762:1345..15371683186999.7030466-CDS-P-wetherbeei_contig7762:1345..1537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7762 1346..1537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7762.1.1prot_P-wetherbeei_contig7762.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7762 80..1537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7762.1.1

>prot_P-wetherbeei_contig7762.1.1 ID=prot_P-wetherbeei_contig7762.1.1|Name=mRNA_P-wetherbeei_contig7762.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MSKRMAWYSYGFDMAKTKKYKQPIPPQMLVLEPTACRRSMDLNYMEFKEI
YEGHMWRGIFDVDPALGRDFAKEVPSWKMWPTKWDYAKDLCDCQGSSDFT
QVMAPGYHLPQDIAAIEYGDYAFYRIWWHGRAYVAVLQSDKRCIMRTPPP
PEEEPDLDASINLRG
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mRNA from alignment at P-wetherbeei_contig7762:52..1537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7762.1.1 ID=mRNA_P-wetherbeei_contig7762.1.1|Name=mRNA_P-wetherbeei_contig7762.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1486bp|location=Sequence derived from alignment at P-wetherbeei_contig7762:52..1537+ (Phaeothamnion wetherbeei SAG_119_79)
GGATCCGTACTACGCGCTCTATGCGAGCATGAGCAAGCGGATGGCGTGGT
ACTCATACGGCTTTGACATGGCCAAAACGAAGAAGTATAAGCAGCCCATC
CCGCCGCAGATGCTCGTGCTCGAGCCGACGGCCTGCCGCCGCAGCATGGA
CCTCAACTACATGGAGTTTAAAGAGATATACGAGGGGTGAGTGTGAAAAT
GGCTCAGAGATTGAGAGAAGAGCGCACGTCTGACTGGCGACAAAAACAAA
GGGCCATTTCGAGAATGAAAAGCGGCCGCTCTTCCTTCGCTCCCCATCAT
GCTTTCTGCTGTCGTTTCATCTTCCCTCACTCTTTCTGACGGCCTGCGCC
GATCCGGAGCAAGGTGGAAGGAGGGCTCACCCACTCCTTCCCCATTTTGA
TGTCGCTCTTCCTCAGTCCTTCCTTCCCGGCTGGCGGCCGCCGGCCTGCT
TTCCTTTCCATTTCTTTCCGTGCGGCCCCTGGCCGCACGGTCCCTCTTCC
GCCTCTCGGTCCCTTGGTCCGTGACCGCAAACACCAACCGACCAAACAAT
CAACCAAATGAAACAGGCACATGTGGCGGGGCATCTTTGACGTGGACCCG
GCGCTGGGCCGCGACTTTGCAAAAGAGGTGCCGAGCTGGAAGATGTGGCC
TACCAAGTGGGACTACGCCAAGGACCTCTGCGACTGCCAGGGCTCCTCCG
ACTTCACCCAGGTGCGGCGTTGTGCGCGGTGTGGTACACACTGCACTACA
CCCCCGTACAGTGCGCAGCGCGGTGCGCGGTGGGTCGGGGCACGGTCGGT
GGCTACCCGTGCGGACGTGTGACCGGGAAGCAGCGTTGGTTTTGGTGTGC
TGGGGGTGATCTATGAGTGGCGGTGGCGGCGGGAACACGAGGGGAGCGGA
GCGCAGTGGAGCGGAATAAGAACCTCGGCCGTCCCCGCCCAGTTTCGGAC
GTGGCCCCTCAGTGGCCGGTTGGTTTGTTCTACAGCAGGAGGCGGCAGTT
GCTTGCTGTTTGAGCTCCTTGCTGGCATCTGGATGCAGCACTGTTTTCTT
TGTGGCCGTCGAGCGGCGGTAGCAAGATTCAGGGGCGTTTGTCAACCGTT
TGGGATCTCCAGGGTTGCTGGCTGCTTTACCCACGCGCTTCACTGCGGGC
CGGATGTTGCCGCGGAGCTGCACTCTATCTGTTCCACGACTGCCTGGCAA
GTAGCTGGCAGCACAATTTGAACTATTTTTTCTCCCGCATTTCGGCTGCT
TGCATCTGCGAAAGTGATATCGCGACGCCGCACGTCACACGCAGGTCATG
GCGCCGGGCTACCACCTCCCCCAAGACATCGCCGCGATTGAGTACGGAGA
CTACGCCTTTTATCGCATCTGGTGGCACGGGCGGGCATACGTCGCGGTCC
TCCAGTCGGACAAGCGTTGCATCATGCGGACACCGCCGCCCCCCGAGGAG
GAACCCGATCTGGATGCGTCCATCAACCTCCGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7762:52..1537+

>mRNA_P-wetherbeei_contig7762.1.1 ID=mRNA_P-wetherbeei_contig7762.1.1|Name=mRNA_P-wetherbeei_contig7762.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig7762:52..1537+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAAGCGGATGGCGTGGTACTCATACGGCTTTGACATGGCCAAAAC
GAAGAAGTATAAGCAGCCCATCCCGCCGCAGATGCTCGTGCTCGAGCCGA
CGGCCTGCCGCCGCAGCATGGACCTCAACTACATGGAGTTTAAAGAGATA
TACGAGGGGCACATGTGGCGGGGCATCTTTGACGTGGACCCGGCGCTGGG
CCGCGACTTTGCAAAAGAGGTGCCGAGCTGGAAGATGTGGCCTACCAAGT
GGGACTACGCCAAGGACCTCTGCGACTGCCAGGGCTCCTCCGACTTCACC
CAGGTCATGGCGCCGGGCTACCACCTCCCCCAAGACATCGCCGCGATTGA
GTACGGAGACTACGCCTTTTATCGCATCTGGTGGCACGGGCGGGCATACG
TCGCGGTCCTCCAGTCGGACAAGCGTTGCATCATGCGGACACCGCCGCCC
CCCGAGGAGGAACCCGATCTGGATGCGTCCATCAACCTCCGCGGC
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