mRNA_P-wetherbeei_contig7727.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A835YSL0_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL0_9STRA) HSP 1 Score: 118 bits (295), Expect = 6.210e-27 Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 3
Query: 534 ALELVALGAVYYACRLSGRPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALG-TELLLLHRIDQWTTGLVS 878
A+EL+ LGAVY R P + R M+P + G R+RVHLEP RY + DW R A++D++Y+VL KP G+ CMAHVSN EC+H CA+ ALG EL +LHRID+WTTGLV+
Sbjct: 11 AMELILLGAVY--AREKPHP-LIRAMEPDALVGEGWRLRVHLEPMRYLSSHMCDWQHRKAYEDEDYLVLYKPPGLPCMAHVSNKLECVHLCAAAALGYKELHMLHRIDKWTTGLVA 123
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A8J4GGA5_9CHLO (PseudoU_synth_2 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GGA5_9CHLO) HSP 1 Score: 108 bits (271), Expect = 5.290e-23 Identity = 61/122 (50.00%), Postives = 71/122 (58.20%), Query Frame = 3
Query: 534 ALELVALGAVYYACRLSG-------RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
ALEL+ LGAVY G R + A + AG VRVH PKRYPAC SDWP RV + D+EYVV+ KPAG+ CM H SN E L C ALG L + HR+DQWTTG+V
Sbjct: 94 ALELLQLGAVYVGIPQKGLDHINWVRSLELTVAPTAATVPAGNYVRVHPRPKRYPACYCSDWPSRVLFCDEEYVVVNKPAGLPCMRHESNALEELASCVGRALGMNGLEVCHRLDQWTTGIV 215
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A835W151_CHLIN (PseudoU_synth_2 domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W151_CHLIN) HSP 1 Score: 106 bits (265), Expect = 1.480e-22 Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 3
Query: 444 DKARVALVTVQQPCMLLEALLGPIGLPPGTALELVALGAVYYACRLSG-------RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
D+ V+L+ V + + +A P G ALEL+ +GAV+ + G R + A L G VRVH +PKRYPAC DWP RV D EYVV+ KP G+ CM H SN E L C +ALG E L + HR+DQWTTG+V
Sbjct: 19 DEGGVSLLAVTEEILCTKAGGEPAGGGRARALELLQIGAVFVGSQQKGTEYINWVRSSDLPVAVTAAHLDRGHFVRVHPQPKRYPACYCKDWPSRVLHVDAEYVVVNKPPGLPCMRHESNAAEELAACVGKALGMEGLEVCHRLDQWTTGVV 170
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A7R9VBZ0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VBZ0_9CHLO) HSP 1 Score: 100 bits (250), Expect = 4.180e-20 Identity = 60/136 (44.12%), Postives = 73/136 (53.68%), Query Frame = 3
Query: 516 GLPPGTALELVALGAVYYACRLSGRP---KMARIMD-PA-----------QPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGT-ELLLLHRIDQWTTGLV 875
GLPP +LV LGAVY + G+ K R +D P L G VRVH PKRYPAC +DW + D ++ V+ KPAGV CM HVSN RE + CA+ LG EL HR+D WTTGL+
Sbjct: 230 GLPPPAVHDLVDLGAVYVGQPIKGQAGVVKWRRAIDLPGCACELSDGRCDMQLSPGTMVRVHSTPKRYPACYATDWRSALVHLDADFAVVNKPAGVPCMRHVSNAREHVTECAARGLGMPELEACHRLDVWTTGLL 365
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A8J9WNS2_9CHLO (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNS2_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 2.690e-17 Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 3
Query: 516 GLPPGTALELVALGAVYY----ACRLSGRPKMA-RIMDPAQ--PLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
GL + EL+ LGAVYY AC + + + A R+ + AQ P++ G +RVH PKRYPA Q DW RV D + V+ KPAG+ +H SN E + RC +ALG + L++LHR+D TTG +
Sbjct: 87 GLHCASVQELIDLGAVYYGDPAACDEAPKWRRANRLAEAAQDHPIQQGQWIRVHPNPKRYPAAQAVDWAARVIHLDADICVVNKPAGIPVQSHESNSVETVPRCLEKALGLDRLMMLHRLDYCTTGAL 214
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: I0Z561_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z561_COCSC) HSP 1 Score: 86.3 bits (212), Expect = 1.590e-15 Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 3
Query: 543 LVALGAVYYA-CRLSGR-PKMARI-----MDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
L+ LGAVYY G+ PK R P P++ G VRVH PKRYPA Q +DW RV D ++ V+ KPA + +H SN E + RC +ALG E L +LHR+D TTG++
Sbjct: 63 LIDLGAVYYGETEAPGQAPKWRRANRLAEAAPHHPIKQGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCVVNKPARIPVQSHESNSVETVPRCLVKALGLEHLWMLHRLDYCTTGVL 181
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A812J866_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812J866_9DINO) HSP 1 Score: 83.2 bits (204), Expect = 3.200e-14 Identity = 59/157 (37.58%), Postives = 77/157 (49.04%), Query Frame = 3
Query: 456 VALVTVQQPCMLLEALLGPIGLPPGTAL-ELVALGAVYYACRLSGR-PKMARIMDPAQP----------LRAGARVRVHLEPKRYPACQRS--DWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEAL---GTELLLLHRIDQWTTGLV 875
V V Q + +L G + G +L EL+ALGAVYY R +M + P + G +RVH EPKRY C DW +R+ + EYVV++KPAGV C HVSN RE L + AL G EL+ R+D T+GL
Sbjct: 48 VIYAAVNQTASISSSLRGLLPAWSGESLAELLALGAVYYMPPEGNRFERMGSTLHPVHSDQRHLVQETLVERGGELRVHTEPKRYHRCSAEGLDWADRLLYVSQEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSSGGEELVACQRLDVATSGLT 204
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A0G4EST6_VITBC (PseudoU_synth_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EST6_VITBC) HSP 1 Score: 82.0 bits (201), Expect = 8.750e-14 Identity = 56/136 (41.18%), Postives = 71/136 (52.21%), Query Frame = 3
Query: 534 ALELVALGAVYYA--------------CRLSGRPKMARIMDPAQPLRAGAR--VRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLVS*AGR 890
AL L+ LG VY + +L + RI D A ++ R +RVHL+PKR DWP RV + +VVLEKP G+ C HVSN+RECLH A L + L+ LHR+D TTGLV A R
Sbjct: 129 ALWLIDLGCVYISENPPADNVPAATLRAQLKSHYRRNRI-DGAISIKGNERFLIRVHLKPKRQRGVH-VDWPSRVRHSCEHFVVLEKPFGLPCQPHVSNYRECLHGAAERGLQEDNLIALHRLDIATTGLVCVARR 262
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A2J8ACD5_9CHLO (RNA pseudourine synthase 6, chloroplastic n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ACD5_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 1.470e-12 Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 3
Query: 534 ALELVALGAVYYACRLSGRPKM--ARIMD-----PAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEAL 821
ALEL+ LG+V+ + GR + +R +D + AG VRVH PKRYP C DW RV + DD+Y+V+ KPAG+ CM H SN E + C +AL
Sbjct: 28 ALELLMLGSVFVGQQFKGRDHLTWSRSIDLDVAVTVAQVPAGHFVRVHPHPKRYPTCY-CDWASRVLFSDDDYIVVNKPAGLPCMRHESNAAEEVAACVGKAL 129
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A4Q6D5X0_9PROT (RluA family pseudouridine synthase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D5X0_9PROT) HSP 1 Score: 71.6 bits (174), Expect = 9.620e-11 Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 3
Query: 540 ELVALGAVYYACRLSGRPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTELLLLHRIDQWTTGLV 875
EL+ LGA+Y + G + MD +R G +RVH +P+RY + W ERV +QD+ ++V+ KP+G+ A V N E L C ++ LG E+ + HR+D T+GL+
Sbjct: 41 ELLKLGAIY----VEGNRTITE-MD----VREGDYIRVHTKPRRY-NTELGLWQERVLFQDENFLVVNKPSGLPVHATVDNLVENLQTCLAKELGCEIFVTHRLDVPTSGLI 142 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7727.1.2 >prot_P-wetherbeei_contig7727.1.2 ID=prot_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp MADKARVALVTVQQPCMLLEALLGPIGLPPGTALELVALGAVYYACRLSGback to top mRNA from alignment at P-wetherbeei_contig7727:2..1419- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7727.1.2 ID=mRNA_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig7727:2..1419- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7727:2..1419- >mRNA_P-wetherbeei_contig7727.1.2 ID=mRNA_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig7727:2..1419- (Phaeothamnion wetherbeei SAG_119_79)back to top |