mRNA_P-wetherbeei_contig7718.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7718.1.1
Unique NamemRNA_P-wetherbeei_contig7718.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7718.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7718contigP-wetherbeei_contig7718:402..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size894
Hectar predicted targeting categoryother localisation
Exons2
Cds size849
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.831309-UTR-P-wetherbeei_contig7718:401..4461683186996.831309-UTR-P-wetherbeei_contig7718:401..446Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7718 402..446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.8397832-CDS-P-wetherbeei_contig7718:446..6751683186996.8397832-CDS-P-wetherbeei_contig7718:446..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7718 447..675 +
1683186996.8477094-CDS-P-wetherbeei_contig7718:770..13901683186996.8477094-CDS-P-wetherbeei_contig7718:770..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7718 771..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7718.1.1prot_P-wetherbeei_contig7718.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7718 447..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7718.1.1

>prot_P-wetherbeei_contig7718.1.1 ID=prot_P-wetherbeei_contig7718.1.1|Name=mRNA_P-wetherbeei_contig7718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=283bp
MDFAKCRVFHVLTTSKLKNHGDDAERYNAVVQGLKEIGEICTAVELLLTE
ASSEKRDWNKVRRALLHKSPAFFVQQQALAEDRAAEGSDEWWTDTYRERY
WQQRSKARLLLLQHDPQAKLAARLARDDLLEGLVEAKPNANARKPRRLGP
SAVDDAKKQPAAEGAIEQHLRQRRRVERAMTGFGRTNSGGTGASPPRGAR
RRPATRGRAEVPPQQQREDRLMGCDGWKGIHIGREAVLSTIETPPRTLFP
DRSRASDCWPGEVRAILGGSSDFCVGTGGSGGG
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mRNA from alignment at P-wetherbeei_contig7718:402..1390+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7718.1.1 ID=mRNA_P-wetherbeei_contig7718.1.1|Name=mRNA_P-wetherbeei_contig7718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=989bp|location=Sequence derived from alignment at P-wetherbeei_contig7718:402..1390+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTGAAAAGGGAAAGACCGAGGCTTTCCTCTATCAGGGCGACCTATGGA
CTTTGCAAAGTGCCGGGTGTTTCACGTGTTGACTACCTCAAAGCTGAAAA
ATCACGGAGACGACGCGGAAAGGTATAATGCTGTGGTTCAGGGGTTGAAA
GAAATTGGGGAAATTTGCACTGCAGTTGAGCTGCTGCTGACTGAGGCTTC
ATCCGAAAAGCGTGATTGGAACAAGGTTCGGCGCGCGCTGCTCCACAAGA
GTCCTGCATTCTTCGTCCAGCAACGTGAGAAACATATGCGTGCGCCGCGC
CCACATGTGCTCTTTCATCAACAGAAGCGCACGACTAACCGTTATCCCTT
TATTCCCTGTTCCATTCAGAAGCTCTGGCCGAAGACCGGGCAGCGGAAGG
TAGCGACGAGTGGTGGACCGACACCTACCGTGAGCGCTATTGGCAGCAGC
GCAGCAAGGCCCGGTTGCTGCTGCTGCAGCACGACCCGCAGGCAAAGCTC
GCTGCCCGGCTCGCCCGTGACGACCTCCTCGAAGGTCTCGTCGAAGCTAA
GCCGAATGCGAACGCTAGAAAGCCGCGACGGCTGGGCCCCTCCGCTGTAG
ACGACGCAAAGAAACAACCCGCCGCCGAGGGTGCCATCGAGCAGCACTTG
CGACAGCGGCGGCGGGTGGAGCGAGCGATGACCGGCTTCGGCAGGACGAA
TTCCGGCGGAACAGGGGCGTCGCCGCCCCGGGGGGCGCGACGGCGGCCGG
CCACGAGGGGCAGGGCCGAAGTTCCTCCGCAGCAGCAGCGGGAGGATCGT
CTCATGGGATGCGACGGGTGGAAGGGCATTCACATCGGGCGTGAAGCGGT
CTTGTCAACGATAGAGACGCCACCGCGAACGCTTTTTCCGGACCGTAGCA
GAGCGTCTGACTGCTGGCCGGGCGAGGTGAGGGCGATCCTTGGCGGCAGC
AGTGACTTTTGCGTCGGCACTGGCGGCAGCGGTGGTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7718:402..1390+

>mRNA_P-wetherbeei_contig7718.1.1 ID=mRNA_P-wetherbeei_contig7718.1.1|Name=mRNA_P-wetherbeei_contig7718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=849bp|location=Sequence derived from alignment at P-wetherbeei_contig7718:402..1390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTTGCAAAGTGCCGGGTGTTTCACGTGTTGACTACCTCAAAGCT
GAAAAATCACGGAGACGACGCGGAAAGGTATAATGCTGTGGTTCAGGGGT
TGAAAGAAATTGGGGAAATTTGCACTGCAGTTGAGCTGCTGCTGACTGAG
GCTTCATCCGAAAAGCGTGATTGGAACAAGGTTCGGCGCGCGCTGCTCCA
CAAGAGTCCTGCATTCTTCGTCCAGCAACAAGCTCTGGCCGAAGACCGGG
CAGCGGAAGGTAGCGACGAGTGGTGGACCGACACCTACCGTGAGCGCTAT
TGGCAGCAGCGCAGCAAGGCCCGGTTGCTGCTGCTGCAGCACGACCCGCA
GGCAAAGCTCGCTGCCCGGCTCGCCCGTGACGACCTCCTCGAAGGTCTCG
TCGAAGCTAAGCCGAATGCGAACGCTAGAAAGCCGCGACGGCTGGGCCCC
TCCGCTGTAGACGACGCAAAGAAACAACCCGCCGCCGAGGGTGCCATCGA
GCAGCACTTGCGACAGCGGCGGCGGGTGGAGCGAGCGATGACCGGCTTCG
GCAGGACGAATTCCGGCGGAACAGGGGCGTCGCCGCCCCGGGGGGCGCGA
CGGCGGCCGGCCACGAGGGGCAGGGCCGAAGTTCCTCCGCAGCAGCAGCG
GGAGGATCGTCTCATGGGATGCGACGGGTGGAAGGGCATTCACATCGGGC
GTGAAGCGGTCTTGTCAACGATAGAGACGCCACCGCGAACGCTTTTTCCG
GACCGTAGCAGAGCGTCTGACTGCTGGCCGGGCGAGGTGAGGGCGATCCT
TGGCGGCAGCAGTGACTTTTGCGTCGGCACTGGCGGCAGCGGTGGTGGG
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