mRNA_P-wetherbeei_contig7716.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7716.4.1
Unique NamemRNA_P-wetherbeei_contig7716.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A352KAF3_9PROT (Ribonuclease E/G n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KAF3_9PROT)

HSP 1 Score: 680 bits (1755), Expect = 4.640e-233
Identity = 340/425 (80.00%), Postives = 387/425 (91.06%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARRRQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSDR 1275
            +ES+GGED LDEVSRPRA RR+YKIQEVIKKRQI+LVQ+LKDERG+KGAALTTYLSI GRYCVLMPNTARGGGISRKI+NAVDRKRLK +A +L+VPEGMGLIIRTAGANRTKAEIKRDF+YLLRQWE IRE TL+STAP LINEEGS++KRA+RDLYDK+IE++ VEGE +Y+EAK FMRMLMPSHA++VQ +R+PVPLF ++Q+EAQLDSMFDP VRLKSGGYIVI+PTEALVSIDVNSGK+TREANIEATALRTNLEAAEEVARQLRLRDLAGL+VIDFIDMEN RNN+AVE++IK+CL +DRA IQ+GRISPFGLLEMSRQRLRQGVVETTT PC NC+GTGL+RSVDSLAL +LRGIEEE MR+     DV VP DVAIYILNQKR WL QIE R   S+F+IA  A+Q+P++EIK + R
Sbjct:  229 VESIGGEDVLDEVSRPRANRRRYKIQEVIKKRQILLVQVLKDERGTKGAALTTYLSIAGRYCVLMPNTARGGGISRKISNAVDRKRLKTIATDLDVPEGMGLIIRTAGANRTKAEIKRDFEYLLRQWEEIRETTLKSTAPSLINEEGSLIKRAIRDLYDKEIEMVLVEGEEAYKEAKSFMRMLMPSHAKKVQPHRDPVPLFHKFQIEAQLDSMFDPAVRLKSGGYIVIDPTEALVSIDVNSGKATREANIEATALRTNLEAAEEVARQLRLRDLAGLVVIDFIDMENHRNNRAVEKRIKECLKSDRARIQVGRISPFGLLEMSRQRLRQGVVETTTSPCPNCNGTGLIRSVDSLALHILRGIEEEAMRKRHRAFDVTVPTDVAIYILNQKRDWLEQIETRFGLSVFVIADSALQAPSYEIKPAQR 653          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A839AC67_9HYPH (Ribonuclease E n=1 Tax=Stappia albiluteola TaxID=2758565 RepID=A0A839AC67_9HYPH)

HSP 1 Score: 576 bits (1484), Expect = 7.870e-194
Identity = 304/465 (65.38%), Postives = 373/465 (80.22%), Query Frame = 1
Query:    1 IESVGGEDALDEV-SRPRARRRQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSDRIAVIPPLLIIAPVAPEIVEEDEVDDL-EETADEPIVQEA 1389
            +ESVG EDAL+E+  R R  RRQYKIQEVIK+RQ++LVQ++K+ERGSKGAALTTYLS+ GRY VLMPNT RGGGISRKITN  DRKRLK +A+ELEVP GMG+I+RTAGA+RTKAEIKRDF+YL+R WE +R+LTL+STAPCL+ EEGS++KR++RDLY+KDI+ + V GE  YREAKDFMRMLMPSHA+ VQ YRE  P+F R+ VEAQLD+MF P V LKSGGYIVIN TEALVSIDVNSGKSTRE NIE TAL+TNLEAAEEV RQLRLRDLAGLIVIDFIDME  +NN++VER++KDCL  DRA IQ+GRIS FGLLEMSRQR+R GV+E++T  C +CHG+G++RSV+S+AL VLR +E++ ++  T  L V  P +VA+YILNQKR  L  +EAR    I ++A   V   ++ +++ + I   P   +IAP    IV+ D V  + EE  +EP V EA
Sbjct:  130 VESVGAEDALEELPQRVRKTRRQYKIQEVIKRRQVLLVQVVKEERGSKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITNPADRKRLKKIASELEVPHGMGVILRTAGASRTKAEIKRDFEYLMRLWENVRDLTLKSTAPCLVYEEGSLIKRSIRDLYNKDIDEVLVSGEEGYREAKDFMRMLMPSHAKNVQPYREATPVFTRFGVEAQLDAMFSPKVTLKSGGYIVINQTEALVSIDVNSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLAGLIVIDFIDMEENKNNRSVERRMKDCLKNDRARIQVGRISHFGLLEMSRQRIRTGVLESSTTVCPHCHGSGIIRSVESVALHVLRSLEDQLLKGVTHDLIVRTPAEVALYILNQKRGHLVDLEARFQLQIAVVADAMVNGQHYVLERGEPILRDPAAPVIAP----IVQPDTVQPIVEEEPEEPFVAEA 590          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A2N3E1E3_9PROT (Ribonuclease E/G (Fragment) n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A2N3E1E3_9PROT)

HSP 1 Score: 574 bits (1479), Expect = 1.060e-192
Identity = 293/427 (68.62%), Postives = 357/427 (83.61%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARR---RQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSD 1272
            IESVG EDA++E + PR +R   R YKIQEVIK+RQI+LVQ++K+ERG+KGAALTTYLS+ GRYCVLMPNTARGGGISRKIT A DRK+LK +A  L+VPEGMGLI+RTAGA RTKAEIKRD++YLLR WE++RELTL+STAP L+ EEGS++KR++RDLYDKDI+ IQ+EG+  Y+EAK+FMRMLMPSHA+ VQ Y+E  PLFQ++QVE QLD+M +PTV LKSGGYIVINPTEALVSIDVNSG+ST+E NIE TAL+TNLEAAEE+ RQ+RLRDLAGLIVIDFIDM+  RNN+AVERK+KDCL TDRA IQ+GRIS FGLLEMSRQR+R GV+E +T  C +C GTGLVRSV+S+AL VLRG+E E ++       V VP +VAIYILNQKR  L  +E R  +S+FI A   +   + +I+ ++
Sbjct:  122 IESVGAEDAMEEAA-PRKQRINYRSYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKGIAESLDVPEGMGLIVRTAGAKRTKAEIKRDYEYLLRMWESVRELTLKSTAPTLVYEEGSLIKRSIRDLYDKDIDAIQIEGDEGYKEAKNFMRMLMPSHAKNVQPYKEKQPLFQKFQVEQQLDAMLNPTVTLKSGGYIVINPTEALVSIDVNSGRSTKERNIEQTALKTNLEAAEEITRQMRLRDLAGLIVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRSGVLEGSTVICPHCTGTGLVRSVESMALHVLRGVEAEAIKGRAAAFTVKVPAEVAIYILNQKRANLLDVEERYGTSVFIEADATLTGSDHKIEPAE 547          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: UPI00155FD6E0 (ribonuclease E/G n=1 Tax=Hongsoonwoonella zoysiae TaxID=2821844 RepID=UPI00155FD6E0)

HSP 1 Score: 573 bits (1476), Expect = 2.130e-192
Identity = 301/462 (65.15%), Postives = 375/462 (81.17%), Query Frame = 1
Query:    4 ESVGGEDALDEVSR--PRARRRQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQS---DRIAVIPPLLIIAPVAPEIVEEDEVDDLEETADEP 1374
            ESVG EDA++EV +  P+AR+ QYKIQEVIK+RQ++LVQ++K+ERG+KGAALTTYLS+ GRY VLMPNT RGGGISRKITN  DRKRLK +A+ELEVPEGMG+I+RTAGA+RTKAEIKRDF+YLLR WE +R+LTL+S+APCL+ EEGS++KR++RDLY+KDI+ + V G+  YREAKDFMRMLMPSHAR VQ YREP P+F R+ VEAQLD+MF P V LKSGGYIVIN TEALVSIDVNSGKSTRE NIE TAL+TNLEAAEE+ARQLRLRDLAGLIVIDFIDME  +NN++VER++K+CL  DRA IQ+GRIS FGLLEMSRQRLR GV+E++T  C +CHG+G++RSV+S+AL VLR +E++ ++  T  + V  PG+VA+YILNQKR  L  +EAR +  I ++A   V   ++ +++    DR AV          AP IV+ D +  + ET +EP
Sbjct:  137 ESVGAEDAMEEVPQRAPKARK-QYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITNPTDRKRLKKIASELEVPEGMGVILRTAGASRTKAEIKRDFEYLLRLWENVRDLTLQSSAPCLVYEEGSLIKRSIRDLYNKDIDQVLVAGDEGYREAKDFMRMLMPSHARNVQPYREPTPVFTRFGVEAQLDAMFSPQVTLKSGGYIVINQTEALVSIDVNSGKSTREHNIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEENKNNRSVERRMKECLKNDRARIQVGRISHFGLLEMSRQRLRTGVLESSTTVCPHCHGSGMIRSVESVALHVLRSLEDQLLKGVTHNIIVRTPGEVALYILNQKRSHLTDLEARFSLEISVLADTMVNGQHYVLERGELLDRDAVA--------AAPAIVQPDTILPVAETIEEP 589          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A2E1EFX5_9HYPH (Ribonuclease E n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E1EFX5_9HYPH)

HSP 1 Score: 573 bits (1478), Expect = 4.470e-192
Identity = 302/461 (65.51%), Postives = 371/461 (80.48%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARR---RQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSDRIAVIP--PLLIIAPVAPEIVEEDEVDDLEETAD 1368
            +ESVG EDA++E + PR +R   R YKIQEVIK+RQI+LVQ++K+ERG+KGAALTTYLS+ GRYCVLMPNTARGGGISRKIT A DRK+LK +A   +VPEGMGLIIRTAGA RTKAEIKRD++YLLR WE++RELTL+STAP L+ EEGS++KR++RDLYDKDI+ IQ+EG+  Y+EAK+FMRMLMPSHA+ VQ Y+E  PLFQ++QVE QLD+M +PTV LKSGGY+VINPTEALVSIDVNSG+ST+E NIE TAL+TNLEAAEE+ARQ+RLRDLAGLIVIDFIDM+  RNN+AVERK+KDCL TDRA IQ+GRIS FGLLEMSRQR+R GV+E +T  C +C GTGLVRSV+S+AL VLRG+E E ++       V VP +VAIYILNQKR  L  +E R  +S++I A   +     +I+ ++  A+    P L    V     EE+E   +EET+D
Sbjct:  153 VESVGAEDAMEEAA-PRKQRINYRSYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKGIAESFDVPEGMGLIIRTAGAKRTKAEIKRDYEYLLRMWESVRELTLKSTAPTLVYEEGSLIKRSIRDLYDKDIDNIQIEGDEGYKEAKNFMRMLMPSHAKNVQPYKEKQPLFQKFQVEQQLDAMLNPTVTLKSGGYVVINPTEALVSIDVNSGRSTKERNIEQTALKTNLEAAEEIARQMRLRDLAGLIVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRSGVLEGSTVICPHCSGTGLVRSVESMALHVLRGVEAEAIKGRAAAFTVKVPAEVAIYILNQKRANLLDVEERYGTSVYIEADATLAGSEHKIETAEARALTRTRPALGAINVESGYTEEEEEPVVEETSD 612          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A6N6VNY2_9HYPH (Ribonuclease E n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VNY2_9HYPH)

HSP 1 Score: 573 bits (1477), Expect = 9.630e-192
Identity = 289/430 (67.21%), Postives = 358/430 (83.26%), Query Frame = 1
Query:    1 IESVGGEDALDEV---SRPRARR---RQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSD 1272
            IES+G  D L+E    ++PR +R   R YKIQEV+K+RQIMLVQ++K+ERG+KGAALTT+LS+ GRYCVLMPNTARGGGISRKIT A DRK+LK++A  L+VPEGMGLI+RTAGA RTKAEIKRD++YLLR WE++RELTLRSTAP L+ EEGS++KR++RDLYDKDI+ + VEG+  Y+EAK+FMRMLMPSHA+ VQ Y+E +PLFQ+YQVE QLDSMF+P V LKSGGY+VINPTEALVSIDVNSG+ST+E NIE TALRTNLEAAEE+ARQ+RLRDLAGLIVIDFIDM+  RNN+AVERK+KDCL TDRA IQ+GRIS FGLLEMSRQR+R GV+E +T  C +C GTGLVRSV+S+AL VLRG+E E  +       + VP +VA+YILNQKR  L  IE R  +S+++ A  +++  +  ++ ++
Sbjct:  166 IESIGAGDVLEEAQEEAQPRKQRHNFRNYKIQEVVKRRQIMLVQVVKEERGNKGAALTTFLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKSIAESLDVPEGMGLIVRTAGAKRTKAEIKRDYEYLLRMWESVRELTLRSTAPALVYEEGSLIKRSIRDLYDKDIDAVFVEGDEGYKEAKNFMRMLMPSHAKNVQQYKEKIPLFQKYQVEQQLDSMFNPVVTLKSGGYVVINPTEALVSIDVNSGRSTKERNIEQTALRTNLEAAEEIARQMRLRDLAGLIVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRSGVLEGSTVQCQHCLGTGLVRSVESMALHVLRGVEAEAAKGRAAAFTLKVPVEVAVYILNQKRANLLDIEERYGTSVYVEADASLKGSDHRVEHAE 595          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A2N3E8K9_9PROT (Ribonuclease E/G (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3E8K9_9PROT)

HSP 1 Score: 568 bits (1465), Expect = 1.110e-191
Identity = 291/427 (68.15%), Postives = 352/427 (82.44%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARR---RQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSD 1272
            IESVG EDA++E + PR +R   R YKIQEV+K+RQI+LVQ++K+ERG+KGAALTTYLS+ GRYCVLMPNTARGGGISRKIT A DRK+LK +A  L+VPEGMGLI+RTAGA RTKAEIKRD++YLLR WE++RELTL+S AP L+ EEGS++KR++RDLYDKDI+ I +EG+  YREAK FMRMLMPSHA+ VQ Y+E  PLFQ+YQVE QLDSM +PTV LKSGGYIVINPTEALVSIDVNSG+ST+E NIE TAL+TNLEAAEE+ RQ+RLRDLAGL+VIDFIDM+  RNN+AVERK+KDCL TDRA IQ+GRIS FGLLEMSRQR+R GV+E +T  C +C GTGLVRSV+S+AL VLRG+E E ++       V VP  VAIY+LNQKR  +  IE R   S++I A   +   +  I+Q++
Sbjct:   64 IESVGAEDAMEEAA-PRKQRINYRSYKIQEVVKRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKGIAESLDVPEGMGLIVRTAGAKRTKAEIKRDYEYLLRMWESVRELTLKSIAPALVYEEGSLIKRSIRDLYDKDIDAIHIEGDEGYREAKGFMRMLMPSHAKNVQPYKEKQPLFQKYQVEQQLDSMLNPTVTLKSGGYIVINPTEALVSIDVNSGRSTKERNIEQTALKTNLEAAEEITRQMRLRDLAGLLVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRSGVLEGSTVTCPHCAGTGLVRSVESMALHVLRGVEAEAVKGRAAAFTVKVPAIVAIYMLNQKRGKVLDIEERYGVSVYIEADATLTGSDHRIEQAE 489          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A2D8S1U6_9HYPH (Ribonuclease E n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D8S1U6_9HYPH)

HSP 1 Score: 572 bits (1475), Expect = 1.510e-191
Identity = 292/427 (68.38%), Postives = 356/427 (83.37%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARR---RQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSD 1272
            IESVG EDA++E + PR +R   R YKIQEVIK+RQI+LVQ++K+ERG+KGAALTTYLS+ GRYCVLMPNTARGGGISRKIT A DRK+LK +A  L+VPEGMGLI+RTAGA RTKAEIKRD++YLLR WE++RELTL+STAP L+ EEGS++KR++RDLYDKDI+ IQ+EG+  Y+EAK+FMRMLMPSHA+ VQ Y+E  PLFQ++QVE QLD+M +PTV LKSGGYIVINPTEALVSIDVNSG+ST+E NIE TAL+TNLEAAEE+ RQ+RLRDLAGLIVIDFIDM+  RNN+AVERK+KDCL TDRA IQ+GRIS FGLLEMSRQR+R GV+E +T  C +C GTGLVRSV+S+AL VLRG+E E ++       V VP +VAIYILNQKR  L  +E R  +S+F+ A   +     +I+ ++
Sbjct:  153 IESVGAEDAMEEAA-PRKQRNNYRSYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITVAADRKKLKNIAESLDVPEGMGLIVRTAGAKRTKAEIKRDYEYLLRMWESVRELTLKSTAPSLVYEEGSLIKRSIRDLYDKDIDAIQIEGDEGYKEAKNFMRMLMPSHAKNVQPYKEKQPLFQKHQVEQQLDAMLNPTVTLKSGGYIVINPTEALVSIDVNSGRSTKERNIEQTALKTNLEAAEEITRQMRLRDLAGLIVIDFIDMDENRNNRAVERKLKDCLKTDRARIQVGRISHFGLLEMSRQRMRSGVLEGSTVICPHCSGTGLVRSVESMALHVLRGVEAEAIKGRAAAFTVKVPAEVAIYILNQKRANLLDVEERYGTSVFVEADATLAGSEHKIETAE 578          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: A0A081B9B1_9HYPH (Ribonuclease E n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B9B1_9HYPH)

HSP 1 Score: 572 bits (1474), Expect = 1.840e-191
Identity = 294/423 (69.50%), Postives = 348/423 (82.27%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARR--RQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIK 1263
            +E VG  DAL+E+S  + RR  R YKIQEVIK+RQI+LVQ++K+ERG+KGAALTTYLS+ GRYCVLMPNTARGGGISRKITNA DRKRLK+V + L+VPEGMGLI+RTAGA RTKAEIKRDF+YLLR WET+RE TL S APCL+ EEGS++KR++RDLY+KDI+ +QVEGE  YREAKDFMRMLMPSHA++VQ Y+E  PLFQR+QVE QLD+MF P V LKSGGY+VIN TEALVSID+NSG+ST+E NIEATA++TNLEAAEE+ARQLRLRDLAGLIVIDFIDME  RNN+AVERK+KDCL  DRA IQ+GRIS FGLLEMSRQR+R GV+E +T  C  C G G++RSV+S AL VLR IE E ++   P L   VP  VA+YILNQKR  L +IE R   SI++ A   + S    I+
Sbjct:  151 VEDVGAGDALEEISAKKERRTQRSYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKRLKSVTSTLDVPEGMGLIVRTAGAQRTKAEIKRDFEYLLRLWETVRERTLESIAPCLVYEEGSLIKRSIRDLYNKDIDTVQVEGEEGYREAKDFMRMLMPSHAKKVQPYKENHPLFQRHQVEQQLDAMFSPIVTLKSGGYLVINQTEALVSIDINSGRSTKERNIEATAVKTNLEAAEEIARQLRLRDLAGLIVIDFIDMEENRNNRAVERKMKDCLKMDRARIQVGRISHFGLLEMSRQRMRTGVLEGSTMQCPTCQGAGIIRSVESKALHVLREIEAEAIKGRAPALTARVPDQVALYILNQKRGHLLEIEERYGLSIYVEADPELGSDAHRIE 573          
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Match: UPI0017862A6C (Rne/Rng family ribonuclease n=2 Tax=Roseibium polysiphoniae TaxID=2571221 RepID=UPI0017862A6C)

HSP 1 Score: 570 bits (1470), Expect = 1.600e-190
Identity = 290/426 (68.08%), Postives = 354/426 (83.10%), Query Frame = 1
Query:    1 IESVGGEDALDEVSRPRARRRQYKIQEVIKKRQIMLVQILKDERGSKGAALTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGMGLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIVKRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPLFQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANIEATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKDCLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRSVDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEARTASSIFIIASDAVQSPNFEIKQSDRI 1278
            +ESVG EDA++EV   R  RRQYKIQEVIK+RQ++LVQ++K+ERG+KGAALTTYLS+ GRY VLMPNTARGGGISRKIT   DRKRLK +A+ELEVPEGMG+I+RTAGA+RTKAEIKRDF+YL+R WE +R+LTLRSTAP L+ EEGS++KR++RDLY+KDI+ + V GE SYREAKDFMRMLMPSHA+ VQ YR+P P+F RY VE QLD+MF P V LKSGGYIVIN TEALVSIDVNSGKSTRE NIE TAL+TNLEAAEEV RQLRLRDLAGL+VIDFIDME  +NN+AVERK+KDCL  DRA IQ+GRIS FGLLEMSRQR+R GV+E++T PC +CHGTG++RSV+S+AL VLR +E+  ++  T  L +    +VA+YILNQKR+ L  +EAR A  + + A   V    + ++++D +
Sbjct:  202 VESVGAEDAMEEVPVRRQSRRQYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKKIASELEVPEGMGVILRTAGASRTKAEIKRDFEYLMRLWENVRDLTLRSTAPSLVYEEGSLIKRSIRDLYNKDIDEVLVAGEDSYREAKDFMRMLMPSHAKNVQPYRDPSPVFIRYGVEPQLDAMFSPQVTLKSGGYIVINQTEALVSIDVNSGKSTREHNIEDTALQTNLEAAEEVTRQLRLRDLAGLVVIDFIDMEENKNNRAVERKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRTGVLESSTTPCPHCHGTGMIRSVESVALHVLRSLEDNLLKGATHNLIIRTTAEVALYILNQKRRNLSDLEARFAVDVEVQADSMVNGQLYVLERADPV 627          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7716.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KAF3_9PROT4.640e-23380.00Ribonuclease E/G n=2 Tax=Alphaproteobacteria bacte... [more]
A0A839AC67_9HYPH7.870e-19465.38Ribonuclease E n=1 Tax=Stappia albiluteola TaxID=2... [more]
A0A2N3E1E3_9PROT1.060e-19268.62Ribonuclease E/G (Fragment) n=2 Tax=unclassified A... [more]
UPI00155FD6E02.130e-19265.15ribonuclease E/G n=1 Tax=Hongsoonwoonella zoysiae ... [more]
A0A2E1EFX5_9HYPH4.470e-19265.51Ribonuclease E n=2 Tax=Hyphomicrobiales TaxID=356 ... [more]
A0A6N6VNY2_9HYPH9.630e-19267.21Ribonuclease E n=1 Tax=Parvibaculum sedimenti TaxI... [more]
A0A2N3E8K9_9PROT1.110e-19168.15Ribonuclease E/G (Fragment) n=1 Tax=Alphaproteobac... [more]
A0A2D8S1U6_9HYPH1.510e-19168.38Ribonuclease E n=3 Tax=Hyphomicrobiales TaxID=356 ... [more]
A0A081B9B1_9HYPH1.840e-19169.50Ribonuclease E n=1 Tax=Tepidicaulis marinus TaxID=... [more]
UPI0017862A6C1.600e-19068.08Rne/Rng family ribonuclease n=2 Tax=Roseibium poly... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7716contigP-wetherbeei_contig7716:724..2706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1333998.M2A_1128
Preferred namerne
PFAMsRNase_E_G,S1
Model size1983
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K08300
KEGG Pathwayko03018,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-192
EggNOG OGsCOG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2TRX2@28211|Alphaproteobacteria,4BPBT@82117|unclassified Alphaproteobacteria
EC3.1.26.12
DescriptionEndoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs
Cds size1983
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.7207668-CDS-P-wetherbeei_contig7716:723..27061683186996.7207668-CDS-P-wetherbeei_contig7716:723..2706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7716 724..2706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7716.4.1prot_P-wetherbeei_contig7716.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7716 724..2706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7716.4.1

>prot_P-wetherbeei_contig7716.4.1 ID=prot_P-wetherbeei_contig7716.4.1|Name=mRNA_P-wetherbeei_contig7716.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=661bp
IESVGGEDALDEVSRPRARRRQYKIQEVIKKRQIMLVQILKDERGSKGAA
LTTYLSIPGRYCVLMPNTARGGGISRKITNAVDRKRLKAVAAELEVPEGM
GLIIRTAGANRTKAEIKRDFDYLLRQWETIRELTLRSTAPCLINEEGSIV
KRAVRDLYDKDIEIIQVEGEASYREAKDFMRMLMPSHARRVQLYREPVPL
FQRYQVEAQLDSMFDPTVRLKSGGYIVINPTEALVSIDVNSGKSTREANI
EATALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMENMRNNKAVERKIKD
CLATDRANIQIGRISPFGLLEMSRQRLRQGVVETTTRPCSNCHGTGLVRS
VDSLALRVLRGIEEECMRRHTPVLDVYVPGDVAIYILNQKRQWLHQIEAR
TASSIFIIASDAVQSPNFEIKQSDRIAVIPPLLIIAPVAPEIVEEDEVDD
LEETADEPIVQEAGEKRETERRRRRGRGRGDDARKPRTENDTDVQKTSDV
NELQEEPIVRLEGETAEEEAVRRKSRRRRRGRGRNRDRDGTQPLPGDEGG
FPLQDDDAGLSGNVLIIPIHAGDEATADTPMQEIWRPAAAQTESAVAEEV
PAIEEPRPAEQEAIAVASISDVAEMAHAPEPEPTPQQALPEAPAGPKRGG
WWQRQFGNKT*
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mRNA from alignment at P-wetherbeei_contig7716:724..2706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7716.4.1 ID=mRNA_P-wetherbeei_contig7716.4.1|Name=mRNA_P-wetherbeei_contig7716.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1983bp|location=Sequence derived from alignment at P-wetherbeei_contig7716:724..2706- (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGTCCGTAGGCGGTGAAGACGCGCTCGACGAAGTATCACGCCCGCG TGCGCGCAGGCGGCAATACAAGATTCAGGAAGTCATCAAGAAACGCCAGA TTATGCTGGTGCAGATTCTGAAAGATGAGCGTGGCTCAAAAGGCGCGGCG CTCACCACCTATCTGTCAATTCCGGGCCGGTATTGCGTATTGATGCCCAA TACGGCGCGCGGTGGCGGGATTTCGCGTAAAATCACCAATGCGGTGGACC GCAAGCGGTTAAAGGCCGTCGCGGCGGAGCTGGAGGTGCCGGAAGGAATG GGCCTGATCATCCGCACCGCGGGGGCGAACCGGACCAAGGCGGAAATCAA GCGCGACTTTGATTATTTGTTGCGGCAATGGGAAACGATCCGTGAATTGA CTCTGCGTTCAACAGCCCCCTGCCTGATCAACGAGGAGGGCAGCATCGTC AAGCGCGCCGTGCGTGATCTGTACGACAAGGACATCGAAATCATTCAGGT CGAAGGCGAGGCCAGTTACCGCGAAGCCAAAGATTTCATGCGCATGCTGA TGCCAAGCCATGCCAGGCGGGTGCAACTCTATCGCGAGCCGGTGCCGCTG TTCCAGCGTTATCAGGTGGAAGCGCAACTGGATTCGATGTTTGACCCGAC GGTCCGGCTGAAATCCGGTGGTTATATCGTCATCAATCCAACCGAGGCGC TGGTTTCAATCGACGTGAATTCCGGCAAGTCAACCCGTGAAGCCAATATC GAAGCGACCGCTTTAAGAACAAACCTGGAGGCTGCCGAGGAAGTGGCGCG GCAATTGCGCTTGCGCGATCTGGCCGGGTTGATCGTGATCGATTTTATCG ACATGGAAAATATGCGCAACAACAAGGCGGTTGAGCGTAAAATAAAGGAT TGCCTGGCCACAGACCGCGCCAATATCCAGATCGGGCGCATCAGCCCGTT TGGGTTGCTGGAAATGTCGCGTCAAAGGCTGCGCCAGGGCGTGGTGGAAA CCACAACGCGCCCCTGTTCAAATTGTCATGGCACCGGCCTGGTGCGTTCG GTCGACTCATTGGCGCTGCGTGTACTGCGCGGCATCGAAGAGGAATGCAT GCGCCGCCATACCCCCGTACTGGATGTATATGTTCCGGGTGATGTAGCGA TTTATATTCTCAATCAGAAACGCCAATGGCTGCATCAGATTGAGGCCCGC ACGGCCAGCTCGATTTTCATCATTGCGTCGGACGCCGTTCAGTCGCCGAA TTTTGAAATCAAGCAGTCAGACCGGATCGCCGTCATTCCACCCCTCTTAA TCATTGCGCCGGTTGCGCCGGAGATTGTGGAAGAAGATGAGGTGGATGAT CTGGAAGAAACTGCGGATGAACCCATTGTCCAGGAAGCTGGAGAAAAGCG GGAGACAGAACGCAGGCGCAGGCGTGGCCGGGGGCGTGGTGATGATGCGC GCAAACCCCGCACGGAAAACGATACAGATGTTCAGAAAACATCTGATGTC AATGAATTGCAGGAAGAACCTATTGTAAGACTGGAAGGCGAGACGGCGGA AGAAGAAGCCGTACGCCGCAAATCGCGCCGCCGCCGGCGTGGCCGGGGGC GTAATCGCGACCGGGATGGGACGCAACCCTTACCAGGGGACGAGGGCGGA TTTCCGCTTCAGGACGATGATGCCGGGTTATCTGGCAATGTTCTAATCAT CCCAATCCATGCAGGTGATGAAGCGACAGCCGACACGCCAATGCAGGAAA TATGGCGTCCGGCAGCGGCGCAGACCGAATCCGCTGTTGCGGAGGAGGTT CCGGCGATAGAGGAGCCGCGTCCGGCAGAGCAGGAGGCCATTGCTGTGGC GTCAATTTCCGATGTTGCCGAAATGGCGCATGCGCCCGAACCTGAACCCA CCCCCCAACAAGCGCTGCCGGAAGCTCCGGCAGGGCCAAAACGCGGCGGC TGGTGGCAACGCCAGTTCGGGAATAAAACGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7716:724..2706-

>mRNA_P-wetherbeei_contig7716.4.1 ID=mRNA_P-wetherbeei_contig7716.4.1|Name=mRNA_P-wetherbeei_contig7716.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1983bp|location=Sequence derived from alignment at P-wetherbeei_contig7716:724..2706- (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGTCCGTAGGCGGTGAAGACGCGCTCGACGAAGTATCACGCCCGCG
TGCGCGCAGGCGGCAATACAAGATTCAGGAAGTCATCAAGAAACGCCAGA
TTATGCTGGTGCAGATTCTGAAAGATGAGCGTGGCTCAAAAGGCGCGGCG
CTCACCACCTATCTGTCAATTCCGGGCCGGTATTGCGTATTGATGCCCAA
TACGGCGCGCGGTGGCGGGATTTCGCGTAAAATCACCAATGCGGTGGACC
GCAAGCGGTTAAAGGCCGTCGCGGCGGAGCTGGAGGTGCCGGAAGGAATG
GGCCTGATCATCCGCACCGCGGGGGCGAACCGGACCAAGGCGGAAATCAA
GCGCGACTTTGATTATTTGTTGCGGCAATGGGAAACGATCCGTGAATTGA
CTCTGCGTTCAACAGCCCCCTGCCTGATCAACGAGGAGGGCAGCATCGTC
AAGCGCGCCGTGCGTGATCTGTACGACAAGGACATCGAAATCATTCAGGT
CGAAGGCGAGGCCAGTTACCGCGAAGCCAAAGATTTCATGCGCATGCTGA
TGCCAAGCCATGCCAGGCGGGTGCAACTCTATCGCGAGCCGGTGCCGCTG
TTCCAGCGTTATCAGGTGGAAGCGCAACTGGATTCGATGTTTGACCCGAC
GGTCCGGCTGAAATCCGGTGGTTATATCGTCATCAATCCAACCGAGGCGC
TGGTTTCAATCGACGTGAATTCCGGCAAGTCAACCCGTGAAGCCAATATC
GAAGCGACCGCTTTAAGAACAAACCTGGAGGCTGCCGAGGAAGTGGCGCG
GCAATTGCGCTTGCGCGATCTGGCCGGGTTGATCGTGATCGATTTTATCG
ACATGGAAAATATGCGCAACAACAAGGCGGTTGAGCGTAAAATAAAGGAT
TGCCTGGCCACAGACCGCGCCAATATCCAGATCGGGCGCATCAGCCCGTT
TGGGTTGCTGGAAATGTCGCGTCAAAGGCTGCGCCAGGGCGTGGTGGAAA
CCACAACGCGCCCCTGTTCAAATTGTCATGGCACCGGCCTGGTGCGTTCG
GTCGACTCATTGGCGCTGCGTGTACTGCGCGGCATCGAAGAGGAATGCAT
GCGCCGCCATACCCCCGTACTGGATGTATATGTTCCGGGTGATGTAGCGA
TTTATATTCTCAATCAGAAACGCCAATGGCTGCATCAGATTGAGGCCCGC
ACGGCCAGCTCGATTTTCATCATTGCGTCGGACGCCGTTCAGTCGCCGAA
TTTTGAAATCAAGCAGTCAGACCGGATCGCCGTCATTCCACCCCTCTTAA
TCATTGCGCCGGTTGCGCCGGAGATTGTGGAAGAAGATGAGGTGGATGAT
CTGGAAGAAACTGCGGATGAACCCATTGTCCAGGAAGCTGGAGAAAAGCG
GGAGACAGAACGCAGGCGCAGGCGTGGCCGGGGGCGTGGTGATGATGCGC
GCAAACCCCGCACGGAAAACGATACAGATGTTCAGAAAACATCTGATGTC
AATGAATTGCAGGAAGAACCTATTGTAAGACTGGAAGGCGAGACGGCGGA
AGAAGAAGCCGTACGCCGCAAATCGCGCCGCCGCCGGCGTGGCCGGGGGC
GTAATCGCGACCGGGATGGGACGCAACCCTTACCAGGGGACGAGGGCGGA
TTTCCGCTTCAGGACGATGATGCCGGGTTATCTGGCAATGTTCTAATCAT
CCCAATCCATGCAGGTGATGAAGCGACAGCCGACACGCCAATGCAGGAAA
TATGGCGTCCGGCAGCGGCGCAGACCGAATCCGCTGTTGCGGAGGAGGTT
CCGGCGATAGAGGAGCCGCGTCCGGCAGAGCAGGAGGCCATTGCTGTGGC
GTCAATTTCCGATGTTGCCGAAATGGCGCATGCGCCCGAACCTGAACCCA
CCCCCCAACAAGCGCTGCCGGAAGCTCCGGCAGGGCCAAAACGCGGCGGC
TGGTGGCAACGCCAGTTCGGGAATAAAACGTAA
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