mRNA_P-wetherbeei_contig7710.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7710.1.1
Unique NamemRNA_P-wetherbeei_contig7710.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7710.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7710contigP-wetherbeei_contig7710:547..2520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1883
Hectar predicted targeting categoryother localisation
Exons3
Cds size978
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.406582-UTR-P-wetherbeei_contig7710:546..5841683186996.406582-UTR-P-wetherbeei_contig7710:546..584Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7710 547..584 -
1683186996.415822-UTR-P-wetherbeei_contig7710:644..14431683186996.415822-UTR-P-wetherbeei_contig7710:644..1443Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7710 645..1443 -
1683186996.4438322-UTR-P-wetherbeei_contig7710:2452..25201683186996.4438322-UTR-P-wetherbeei_contig7710:2452..2520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7710 2453..2520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.4243395-CDS-P-wetherbeei_contig7710:1443..16131683186996.4243395-CDS-P-wetherbeei_contig7710:1443..1613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7710 1444..1613 -
1683186996.4335763-CDS-P-wetherbeei_contig7710:1644..24521683186996.4335763-CDS-P-wetherbeei_contig7710:1644..2452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7710 1645..2452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7710.1.1prot_P-wetherbeei_contig7710.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7710 1444..2452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7710.1.1

>prot_P-wetherbeei_contig7710.1.1 ID=prot_P-wetherbeei_contig7710.1.1|Name=mRNA_P-wetherbeei_contig7710.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=326bp
MMHGEALRKEDRELFLQLRAKRARELVKEVSSSVAAAQAAAALAEIKDGR
RAALIRHEAALVLDPSSTHIYTVELERRIALLSALIASSHRLEDRRNRPV
SDIPSFVATMLSEARACFGDGVLTLSLLRPSGKALVALGKCPMFSDFEYR
DPALPPQTDAGRDLEGNRPSAAAATEAAWGNVAMGRCVCRRAAVVALFAG
RAVGLAIPSSPPAPASRARRREGGSGGGENAEIRGVSRGVSPDAAEAHAK
NRKLSAGRQQHAPQSTINAWVAAVAAVAAASAPAASAPAASAVAPASPAA
AASAAVAAGSVGAARRRSLRMSTYP*
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mRNA from alignment at P-wetherbeei_contig7710:547..2520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7710.1.1 ID=mRNA_P-wetherbeei_contig7710.1.1|Name=mRNA_P-wetherbeei_contig7710.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1974bp|location=Sequence derived from alignment at P-wetherbeei_contig7710:547..2520- (Phaeothamnion wetherbeei SAG_119_79)
AAGAAAGAAACGGAAAGATACTTTTTCGCGAAGGGGAGAAAAGCCGCCCT
CCGTCCGGTACCGGCTTGATGATGCATGGGGAGGCCCTCAGGAAGGAGGA
CCGCGAGCTCTTCTTGCAGCTCCGAGCGAAACGAGCTCGAGAGCTCGTGA
AGGAGGTATCATCCTCCGTTGCCGCAGCCCAAGCGGCAGCGGCTCTCGCC
GAAATAAAAGACGGACGACGGGCTGCTCTTATCCGCCATGAAGCTGCCCT
GGTTCTGGACCCGTCGAGCACCCACATCTACACAGTCGAACTGGAGCGTC
GCATCGCGCTGCTGTCCGCGCTTATCGCGTCGTCGCATCGCCTCGAAGAT
AGAAGGAATCGCCCTGTTTCGGATATCCCGTCTTTTGTTGCAACTATGCT
GTCCGAAGCACGCGCCTGCTTTGGCGACGGTGTCCTGACGCTGTCGCTGC
TGCGCCCCAGCGGCAAGGCCCTCGTGGCTCTCGGCAAATGTCCAATGTTT
TCCGACTTCGAATACCGTGATCCAGCGCTGCCGCCGCAAACCGACGCCGG
GCGGGATTTGGAAGGCAACAGACCTTCCGCTGCAGCAGCGACGGAAGCCG
CGTGGGGTAATGTTGCCATGGGACGCTGCGTCTGCCGTCGCGCCGCCGTG
GTGGCGCTGTTTGCAGGCCGCGCCGTCGGATTGGCAATACCGTCGTCGCC
GCCGGCCCCGGCTTCGAGGGCACGCCGAAGAGAAGGAGGCAGCGGCGGCG
GAGAGAATGCAGAAATAAGAGGCGTCAGCCGAGGCGTGTCCCCGGACGCA
GCAGAGGCGCACGCAAAAAACCGGAAGCTGAGCGCCGGCCGGCAGCAGCA
CGCGCCGCAATCCACTATCAACGCCTCTCCCGCCTCGCCGCCAGTGCGCG
ACAGCGCGGGTGGCGGCCGTGGCGGCCGTGGCGGCGGCATCAGCACCGGC
AGCATCGGCACCGGCCGCATCGGCAGTGGCACCAGCGTCGCCGGCAGCAG
CAGCGTCGGCAGCTGTTGCGGCAGGAAGCGTAGGAGCGGCGAGACGAAGG
TCATTGCGCATGTCTACGTACCCCTGATGGACGAAGGCGGTGCAACGTGC
ATCGGCGCCCTCGCGCTGCGCGCGTACTCGGTGCCGGCGGCGACGTTGTC
GCGCGAATCGTCATCTTCTTCTTCGATGCGAGGCAGGCTCTCGGCGCCGC
CTTCGAAGGATGGTCCGGTTCCATTGGATCGTGGCGCCGTGTACGTCGGG
CAAGCGTCCCAAACGTCAAAGGCAGCAAGCTCTTCCTACGCTCCGCTCTA
TTCTTGGCGCTGGGAGGAGGCGAATGCGGCAGGGGAGAGCGACGATGCGA
TGGTTTCTGAAGATTTTGCGGCCGTGGCGGGGGCTGCATCGACCACAGGA
GCCGGAAAGGGCCATGGCGGCGGCGGCGGCGGCGGCAACGGCGCAGACGC
TGAGCTAATGGCAGTGGTACGGTACCTTCGCCATTTGGCGGCGTGCTGCG
GGCCGCAAATCGACCGCGCCCGAAAGCTCAATGCACTGAAGATGATTGCT
GCTCTGGCGGTGCCTTCCGGCGCGGCCGCGGCGGCTGCGGCGGCGGAAAC
AGCGGCGGCGGCGGCGGCGTTAACGTCGGTGGCAGCCACACTAGCAGCGG
TGAGGACGGATGGCGACGTCTCACAGCGGGGTTCCGCTCCCGCCACCGCT
ACGAGCGACGGCCCGGCAAATGTGCTCCGCGCCGGCCTGGCGGCGGCCGT
CGACTGTCTGCCGGCCCTGATCACCGCGGAGGTGTGGCAGGTCAGCGGTG
ACAGCGGGAACGTCGCCTGCATCGCGCGCACGAACTGCGATGCCGTCGTC
GGCAGCAGCCCTGTCGTGCCGCGCCTCTACGGCAGCAGCAGCGCCGCCAC
CGCGGCGGCGGCCGCGGTCGCCGGCACGGTCCACGCCGGCGACCGCGGCG
AGTTTGAGCGCCTGTTTTCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7710:547..2520-

>mRNA_P-wetherbeei_contig7710.1.1 ID=mRNA_P-wetherbeei_contig7710.1.1|Name=mRNA_P-wetherbeei_contig7710.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=978bp|location=Sequence derived from alignment at P-wetherbeei_contig7710:547..2520- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCATGGGGAGGCCCTCAGGAAGGAGGACCGCGAGCTCTTCTTGCA
GCTCCGAGCGAAACGAGCTCGAGAGCTCGTGAAGGAGGTATCATCCTCCG
TTGCCGCAGCCCAAGCGGCAGCGGCTCTCGCCGAAATAAAAGACGGACGA
CGGGCTGCTCTTATCCGCCATGAAGCTGCCCTGGTTCTGGACCCGTCGAG
CACCCACATCTACACAGTCGAACTGGAGCGTCGCATCGCGCTGCTGTCCG
CGCTTATCGCGTCGTCGCATCGCCTCGAAGATAGAAGGAATCGCCCTGTT
TCGGATATCCCGTCTTTTGTTGCAACTATGCTGTCCGAAGCACGCGCCTG
CTTTGGCGACGGTGTCCTGACGCTGTCGCTGCTGCGCCCCAGCGGCAAGG
CCCTCGTGGCTCTCGGCAAATGTCCAATGTTTTCCGACTTCGAATACCGT
GATCCAGCGCTGCCGCCGCAAACCGACGCCGGGCGGGATTTGGAAGGCAA
CAGACCTTCCGCTGCAGCAGCGACGGAAGCCGCGTGGGGTAATGTTGCCA
TGGGACGCTGCGTCTGCCGTCGCGCCGCCGTGGTGGCGCTGTTTGCAGGC
CGCGCCGTCGGATTGGCAATACCGTCGTCGCCGCCGGCCCCGGCTTCGAG
GGCACGCCGAAGAGAAGGAGGCAGCGGCGGCGGAGAGAATGCAGAAATAA
GAGGCGTCAGCCGAGGCGTGTCCCCGGACGCAGCAGAGGCGCACGCAAAA
AACCGGAAGCTGAGCGCCGGCCGGCAGCAGCACGCGCCGCAATCCACTAT
CAACGCCTGGGTGGCGGCCGTGGCGGCCGTGGCGGCGGCATCAGCACCGG
CAGCATCGGCACCGGCCGCATCGGCAGTGGCACCAGCGTCGCCGGCAGCA
GCAGCGTCGGCAGCTGTTGCGGCAGGAAGCGTAGGAGCGGCGAGACGAAG
GTCATTGCGCATGTCTACGTACCCCTGA
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