mRNA_P-wetherbeei_contig7708.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 5.050e-14 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query: 1020 AAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
A LR P A ++ Q+P+ SPWK P+LR LS + ++GL + Y++Y SRLLFEL+AD AI +M++L+PV VT P + QP F+S PG
Sbjct: 58 ATHLRSPAARSARVDDRHGPQSPQSSPWKRPMLRALS-THVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEKQPVQFVSTRPG 156
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 5.140e-14 Identity = 79/273 (28.94%), Postives = 113/273 (41.39%), Query Frame = 3
Query: 684 LEFAPTIDFDFGEPLPPPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKGRGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIET---KAAKLRRPCAGL----------------------------------------------------------EVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
L F PTI+ D G + + QA ++AA G + RL+G VT+ V L AA+ V K ++ P GEF++ G+HVPV RLL+ + T + + P +G ++L+ ALQ+ SPWK P+LR LS GL + Y++Y SRLLFEL+AD AI +M++L+PV VT P + QP F+S PG
Sbjct: 11 LPFYPTIELDTGAKVKQVPDWLKKQAPEDAATGKEYIGRLMG--KVTLKVACLSAVRTKLLAAHKVNFVK----IQSRPCLVVRTWDQDGEFTSRAGEHVPVCRLLDAVTTGLVTSCAVVAPSSGTTISAAGGKRVGHTAAVGVGTSAAAXXXXXPPANDGCDGGDGTGDVSSAVAASETNEAADLLQHVYALQS---SPWKRPMLRALSTHVPTD-YGLAVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPG 273
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.680e-12 Identity = 67/222 (30.18%), Postives = 106/222 (47.75%), Query Frame = 3
Query: 702 IDFDFGEPLP-PPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKG-RGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSV--------------SRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
ID G +P P + + + AAK A G ARL+G VTV V P + + +A + ++ +G K P W T+GEF T G +P++RLL ++ K A + V+E +LQ P+ SPW+ P++RLL+ ++ +E+ ++VY RL+FEL+A++ + +M L P G V L P F +P G
Sbjct: 101 IDMVTGRAVPWPGADWVAKDAAKRAVLGLDTEARLIG--SVTVHVHMRPAILRAMLSAQKIKSTQRPVKGLKG--PIQVNWDRTSGEFPTPQGQ-LPLSRLLCAMDEKKALCPEE-SHASVMERLWSLQNPQSSPWRRPMIRLLTSLQSPPAMLLAPDEPEKEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSG 316
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 6.210e-11 Identity = 66/222 (29.73%), Postives = 104/222 (46.85%), Query Frame = 3
Query: 702 IDFDFGEPLP-PPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKG-RGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSV--------------SRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
ID G +P P + + + AAK A G ARL+G VTV V + + +A V ++ +G K P W T+GEF T G +P++RLL ++ K A + ++E +LQ P+ SPW+ P++RLL+ + +E+ ++VY RL+FEL+A++ + +M L P G V L P F +P G
Sbjct: 101 IDMVTGRAVPWPGADWVAKDAAKRAVLGLDTEARLIG--SVTVHVHMRSAILRAMLSAQKVKSTQRPVKGLKG--PIQVNWDRTSGEFPTPQGQ-LPLSRLLCAMDEKKALCAEE-SHASIMERLWSLQNPQSSPWRRPMIRLLTSLQPPPAILLAPDEPEEEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSG 316
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: F0XXK2_AURAN (FHA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXK2_AURAN) HSP 1 Score: 73.2 bits (178), Expect = 7.730e-10 Identity = 61/186 (32.80%), Postives = 87/186 (46.77%), Query Frame = 3
Query: 783 DVNVARLLGLFMVTVDVM--GDPGKV--DHLRAANPVAPPKKGR------GAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSA 1310
D RLLG +V DV GD G+ D RA NP A + A EP + +D V RLL+ + + L R A + LE+ L AP P K P LR + V+ + G GL++ VYA+RLLF L+AD A+K ++ ++ P GAV A P +F+++
Sbjct: 1538 DAEPCRLLGTSLVAFDVAAGGDAGRELRDLCRAVNPTAKATRTHYGVERFNADGEPGK------------DKDEATTTVKRLLDKVR-QGKLLARAAAAVPFLEAAHGLMAPAHLPHKAPCLRCVCVAAR-GAGGLDVEVRVYATRLLFYLIADDAVKAVLNHIAPAGAVLRREAPPPTADLFVTS 1709
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC) HSP 1 Score: 62.8 bits (151), Expect = 1.260e-6 Identity = 62/220 (28.18%), Postives = 90/220 (40.91%), Query Frame = 3
Query: 690 FAPTIDFDF-----GEPLPPPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRA------ANPVAPPKKGRGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVG----------------------KNGLEIVYYVYASRLLFELVADAAIKTIMENLQP 1250
+ PTI FD G P+ P + + A AA N RLLG+ T+ + PG+ H RA A A + R P W+ GE + G VPV +L E + + P GL +L + Q P SPWK PL R + + V +++ VYASRL+FE++AD ++ I+ +L P
Sbjct: 76 YPPTIAFDDPFHPRGVPVRCPPDWHTVDGANAAAERIRNEVRLLGV--ATLTLASAPGEA-HARATLASLAAGVRASKRTVRKNYRGPAGVETWN-DVGEPGSARGTSVPVGKLAECVSAGILDVAEP-HGLPLLHALAGGQHPVTSPWKVPLTRCVCLLEAVSDAPANPPGAVGGSHEGETESSQSTAVKVELAVYASRLMFEMIADDGVRLIVSHLAP 290
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: A0A830HSR7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HSR7_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 1.090e-5 Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 3
Query: 933 VWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIV----YYVYASRLLFELVADAAIKTIMENL 1244
WH TGE T V + L + IE+ + A + ++S AL P SPW PL+R+L + + L + VYASRLLFELVAD A++T++ L
Sbjct: 176 TWHTETGETCTNQKSLVSIPLLHQAIESFKINVAEEAA--KTVDSLDALMRPAASPWHMPLVRVLG---NLPDDPLAVEDTLHLQVYASRLLFELVADDAVRTVLAAL 278 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7708.2.1 >prot_P-wetherbeei_contig7708.2.1 ID=prot_P-wetherbeei_contig7708.2.1|Name=mRNA_P-wetherbeei_contig7708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp MAEPPRRSSTREKRKVEVFSPTKAIPPEEERGGKKPKKDPAPAEPSRRYHback to top mRNA from alignment at P-wetherbeei_contig7708:1140..2896+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7708.2.1 ID=mRNA_P-wetherbeei_contig7708.2.1|Name=mRNA_P-wetherbeei_contig7708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1757bp|location=Sequence derived from alignment at P-wetherbeei_contig7708:1140..2896+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7708:1140..2896+ >mRNA_P-wetherbeei_contig7708.2.1 ID=mRNA_P-wetherbeei_contig7708.2.1|Name=mRNA_P-wetherbeei_contig7708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig7708:1140..2896+ (Phaeothamnion wetherbeei SAG_119_79)back to top |