mRNA_P-wetherbeei_contig7700.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7700.1.1
Unique NamemRNA_P-wetherbeei_contig7700.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A6H5KAN0_9PHAE (PRP3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.970e-22
Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  504 AAATGTGAAAGGSATPAAGQQPWAERRTRDFTLLLDDQGRQVDAEGRVVKLGPVQTLKVNR--HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNAEQLDEP 905
            A A G  AA GG+A+          ++ +D TL LD +GRQVDA+G+VVK+GPV T+K NR   K  NPYL H     +D     DP ++  +R  R ++A  FVE G Y K GD +RFRE R+FL GR  GR N AEQLD P
Sbjct:  193 AVAAGVAAANGGTASAL-------PKKAQDHTLRLDAKGRQVDADGKVVKMGPVLTIKANRLGSKAHNPYLQHRTVEDTDAAQAVDPRVQTGNRDKRAKRAFNFVEEGTYIKQGDNLRFREHRKFLSGRMSGRVN-AEQLDPP 327          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A836CLY2_9STRA (Pre-mRNA processing factor 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.620e-9
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  384 PAAAAGPTP---DLVAAKAAQHAALQAKIQARLANSAILLNQTAAATGTGAAAGGSATPAAGQQPWAERRTRDFTLLLDDQGRQVDAEGRVVK--LGPVQTLKVN---RHKGENPYLAHGASGGSD-DPSLRHRQARTQKA-LQFVEPGRY 806
            PAA+A   P   D  A KAAQ AALQA IQA++AN++                     P       A ++ RDFTL LD+QGRQ+D  G+V++    PV TLK N   + +  NPYLAH      + D  L+ + AR +++   FV+ G +
Sbjct:   32 PAASAPAVPAGLDDAALKAAQLAALQASIQAQIANASXXXXXX---------------PXXXXXAPAPKKARDFTLRLDEQGRQIDETGKVIQSEFKPVVTLKANVDAQRRANNPYLAHKLGADKEIDARLQAKVARPKRSTFSFVKEGTF 167          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A6G0X223_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X223_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.320e-8
Identity = 47/114 (41.23%), Postives = 58/114 (50.88%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVVK--LGPVQTLKVN---------RHKGENPYLAHGASGGSD-----DP--SLRHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNA 887
            LLLDDQGR +DA G V+   + PV TLK N           K  NPYLAH      D     DP   ++ R+ R  K   FV+ G + K GD MR RE ++ L G + GR  NA
Sbjct:  126 LLLDDQGRHIDAMGNVLTDTVAPVATLKANIGVSDAQKEPQKPVNPYLAHRTIDKEDRLDSVDPRVKVKKRETRGAKNFAFVKQGTFIKQGDQMRAREAKKMLAGFSSGRNPNA 239          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A1V9Y985_9STRA (U4/U6 small nuclear ribonucleoprotein Prp3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y985_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.120e-8
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVV--KLGPVQTLKVN----------RHKGENPYLAHGASGGSD-----DPSL--RHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNA 887
            LLLDDQGR +DA G V+  K+ PV TLK N          + K  NPYL++      D     DP L  R+R  R  K   FV+ G Y   G+ +R RE ++ L G + GR  NA
Sbjct:  106 LLLDDQGRHIDASGNVIEEKVAPVATLKANIGVSEIEKAKQKKPVNPYLSYRVIEREDRLDAMDPRLKTRNRDTRGAKNFTFVKQGTYIXXGEQLRAREAKKMLAGFSSGRNPNA 220          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: G4YM89_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YM89_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 6.310e-8
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVVK----LGPVQTLKVNR---------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
            LLLD+QGR++DA G VV     + PV TLK N+          K +NPYL+H   G  D     DP L+   R+ R +K   FV  G Y K  + +R R+ ++ + G   GR
Sbjct:  147 LLLDEQGREIDAAGNVVAEKPTVAPVATLKANQAGARGSDAVKKNQNPYLSHLTVGEEDKLEAVDPRLKVTKRETRARKTFNFVAQGTYVKQAEQVRARDAKKMMAGFTSGR 258          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: H3GNM0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNM0_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 9.870e-8
Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVVK----LGPVQTLKVNR--------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
            LLLD+QGR+VDA G VV     + PV TLK N+         K +NPYL+H      D     DP L+   R+ R +K   FV  G Y K  + +R R+ ++ + G   GR
Sbjct:  137 LLLDEQGREVDANGNVVAEKPMVAPVATLKANQGAPKSGRAKKNQNPYLSHRTVDEEDKLETVDPRLKVTKRETRARKTFNFVTQGTYVKQAEQVRARDAKKMMAGFTSGR 247          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: K3W6M6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6M6_GLOUD)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-7
Identity = 45/117 (38.46%), Postives = 57/117 (48.72%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVVK---LGPVQTLKVNRHKGE---------------NPYLAHGASGGSD-----DPSL--RHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
            LLLD+QGRQ+DA G V+      PV TLK N+  G                NPYL+H      D     DP L  + R+ R  K+ QFV  G Y K G+ +R RE ++ L G   GR
Sbjct:  156 LLLDEQGRQIDAAGNVIADPLPAPVATLKANQSSGTTAARSSSTQQKQQNANPYLSHRTVDKEDAVDAVDPRLTIKKRETRGAKSFQFVTHGTYIKQGEQVRAREAKKMLAGFTSGR 272          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A421H1J6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H1J6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.780e-7
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVV----KLGPVQTLKVNR----------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
            LLLD+QGR++DA G VV     + PV TLK N+             +NPYL+H      D     DP L+   R+ R +K   FV  G Y K G+ +R R+ ++ + G   GR
Sbjct:  149 LLLDEQGREIDAAGNVVVEKPTVAPVATLKANQGGAKRSAEGNRSNQNPYLSHRTVDEEDKLEAVDPRLKVTKRETRARKTFNFVAQGTYVKQGEQVRARDAKKMMAGFTSGR 261          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A6A3TVC5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TVC5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.170e-7
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVVK----LGPVQTLKVNR---------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
            LLLD+QGR++DA G VV     + PV TLK N+          K +NPYL+H      D     DP L+   R+ R +K   FV  G Y K  + +R R+ ++ + G   GR
Sbjct:  149 LLLDEQGREIDAAGNVVAEKPTVAPVATLKANQGGARGGDAVKKSKNPYLSHRTVDEEDKLETVDPRLKVTKRETRARKTFNFVAQGTYVKQAEQVRARDAKKMMAGFTSGR 260          
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A067CSB0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSB0_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 5.650e-7
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 3
Query:  600 LLLDDQGRQVDAEGRVV--KLGPVQTLKVN-----------RHKGENPYLAHGASGGSD-----DPSL--RHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNA 887
            LLLD++GR +DA+G V+  K+ PV TLK N           + K  NPYL+  +    D     DP L  R+R  R  K   FV+ G Y   G+ +R RE ++ L G + GR  NA
Sbjct:  115 LLLDNEGRHIDADGNVIEEKVAPVATLKANLGAGAEAEKAKQKKPVNPYLSFRSVDHRDRVDTVDPRLKTRNRDTRGAKNFTFVKQGTYIXXGEQLRAREAKKMLAGFSSGRNPNA 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KAN0_9PHAE4.970e-2247.55PRP3 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836CLY2_9STRA9.620e-937.09Pre-mRNA processing factor 3-domain-containing pro... [more]
A0A6G0X223_9STRA2.320e-841.23Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Y985_9STRA4.120e-840.00U4/U6 small nuclear ribonucleoprotein Prp3 n=1 Tax... [more]
G4YM89_PHYSP6.310e-837.50Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
H3GNM0_PHYRM9.870e-837.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
K3W6M6_GLOUD1.010e-738.46Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A421H1J6_9STRA1.780e-736.28Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A6A3TVC5_9STRA3.170e-736.61Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A067CSB0_SAPPC5.650e-737.93Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7700contigP-wetherbeei_contig7700:178..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000021090
PFAMsDUF1115,PRP3
Model size971
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.69e-09
EggNOG OGsKOG2769@1|root,KOG2769@2759|Eukaryota,1MGK4@121069|Pythiales
DescriptionU4 U6 small nuclear ribonucleoprotein Prp3. Source PGD
Cds size648
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.7684815-CDS-P-wetherbeei_contig7700:177..8251683186995.7684815-CDS-P-wetherbeei_contig7700:177..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7700 178..825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.786061-UTR-P-wetherbeei_contig7700:825..11481683186995.786061-UTR-P-wetherbeei_contig7700:825..1148Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7700 826..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7700.1.1prot_P-wetherbeei_contig7700.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7700 178..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7700.1.1

>prot_P-wetherbeei_contig7700.1.1 ID=prot_P-wetherbeei_contig7700.1.1|Name=mRNA_P-wetherbeei_contig7700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
MTAGGNGHPPQSNGVSNGNRPAAAAGPTPDLVAAKAAQHAALQAKIQARL
ANSAILLNQTAAATGTGAAAGGSATPAAGQQPWAERRTRDFTLLLDDQGR
QVDAEGRVVKLGPVQTLKVNRHKGENPYLAHGASGGSDDPSLRHRQARTQ
KALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNAEQLDEPATASAA
SASAAGAEGTAAGVTS
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mRNA from alignment at P-wetherbeei_contig7700:178..1148-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7700.1.1 ID=mRNA_P-wetherbeei_contig7700.1.1|Name=mRNA_P-wetherbeei_contig7700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=971bp|location=Sequence derived from alignment at P-wetherbeei_contig7700:178..1148- (Phaeothamnion wetherbeei SAG_119_79)
GACGAGGGTGCGGACGGCCAACCCACGGGCCGCGTGAACAAGCGGAGAAG TCGATTCGGGGATGCTGTCGCAGTTGAAAGCGTGAGTTTAAGCGGCTCCA GAACAAGCGGCCTCGTCTCCCGGTTTTCCGAAACCTGACTTTCACCTTGC TCCCTCTCACGCTTGTGTATTCTGTCCGCCCCATCTTTCACGCAACCCCT GCCGTTTCGAACCAGGCAACCGTGCCCGTGCCGGGAGGCGGCGGCGCCGG TCCTCCTCAGACGCCAGCTGTGATTGCGGCGGCACTCACAGCAAGGCTAC TTCAGCAGCAGGCGCCTCACGTCATGACTGCAGGCGGAAACGGACACCCG CCGCAATCAAACGGAGTCAGCAACGGCAACCGGCCTGCTGCTGCAGCGGG ACCGACTCCAGATCTCGTGGCAGCCAAGGCGGCTCAGCATGCGGCTCTCC AGGCCAAGATACAGGCCAGACTCGCAAACAGCGCCATCTTGCTCAACCAG ACGGCGGCGGCGACGGGGACTGGCGCGGCGGCGGGAGGATCAGCGACACC AGCGGCAGGGCAGCAGCCGTGGGCGGAGCGCAGGACGAGGGACTTCACCC TGCTGCTGGATGACCAGGGCCGGCAGGTCGACGCCGAAGGGCGCGTCGTG AAGCTCGGGCCCGTCCAAACGCTCAAGGTGAACCGCCATAAGGGCGAGAA CCCTTACCTGGCGCATGGTGCCAGCGGCGGCTCAGACGACCCGAGCTTGC GGCACCGGCAGGCGCGGACGCAAAAGGCACTGCAGTTCGTGGAGCCGGGG CGCTACTCTAAGCTGGGGGACACGATGCGCTTCCGGGAGCAGCGCCAATT CCTGCGAGGGCGGGCGGAGGGCCGCGCCAACAATGCGGAGCAGCTCGACG AGCCCGCCACCGCTTCCGCCGCTTCTGCCAGTGCTGCTGGTGCAGAAGGC ACCGCGGCAGGCGTCACATCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7700:178..1148-

>mRNA_P-wetherbeei_contig7700.1.1 ID=mRNA_P-wetherbeei_contig7700.1.1|Name=mRNA_P-wetherbeei_contig7700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig7700:178..1148- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCAGGCGGAAACGGACACCCGCCGCAATCAAACGGAGTCAGCAA
CGGCAACCGGCCTGCTGCTGCAGCGGGACCGACTCCAGATCTCGTGGCAG
CCAAGGCGGCTCAGCATGCGGCTCTCCAGGCCAAGATACAGGCCAGACTC
GCAAACAGCGCCATCTTGCTCAACCAGACGGCGGCGGCGACGGGGACTGG
CGCGGCGGCGGGAGGATCAGCGACACCAGCGGCAGGGCAGCAGCCGTGGG
CGGAGCGCAGGACGAGGGACTTCACCCTGCTGCTGGATGACCAGGGCCGG
CAGGTCGACGCCGAAGGGCGCGTCGTGAAGCTCGGGCCCGTCCAAACGCT
CAAGGTGAACCGCCATAAGGGCGAGAACCCTTACCTGGCGCATGGTGCCA
GCGGCGGCTCAGACGACCCGAGCTTGCGGCACCGGCAGGCGCGGACGCAA
AAGGCACTGCAGTTCGTGGAGCCGGGGCGCTACTCTAAGCTGGGGGACAC
GATGCGCTTCCGGGAGCAGCGCCAATTCCTGCGAGGGCGGGCGGAGGGCC
GCGCCAACAATGCGGAGCAGCTCGACGAGCCCGCCACCGCTTCCGCCGCT
TCTGCCAGTGCTGCTGGTGCAGAAGGCACCGCGGCAGGCGTCACATCT
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