mRNA_P-wetherbeei_contig7700.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A6H5KAN0_9PHAE (PRP3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN0_9PHAE) HSP 1 Score: 106 bits (264), Expect = 4.970e-22 Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = 3
Query: 504 AAATGTGAAAGGSATPAAGQQPWAERRTRDFTLLLDDQGRQVDAEGRVVKLGPVQTLKVNR--HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNAEQLDEP 905
A A G AA GG+A+ ++ +D TL LD +GRQVDA+G+VVK+GPV T+K NR K NPYL H +D DP ++ +R R ++A FVE G Y K GD +RFRE R+FL GR GR N AEQLD P
Sbjct: 193 AVAAGVAAANGGTASAL-------PKKAQDHTLRLDAKGRQVDADGKVVKMGPVLTIKANRLGSKAHNPYLQHRTVEDTDAAQAVDPRVQTGNRDKRAKRAFNFVEEGTYIKQGDNLRFREHRKFLSGRMSGRVN-AEQLDPP 327
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A836CLY2_9STRA (Pre-mRNA processing factor 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY2_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 9.620e-9 Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 3
Query: 384 PAAAAGPTP---DLVAAKAAQHAALQAKIQARLANSAILLNQTAAATGTGAAAGGSATPAAGQQPWAERRTRDFTLLLDDQGRQVDAEGRVVK--LGPVQTLKVN---RHKGENPYLAHGASGGSD-DPSLRHRQARTQKA-LQFVEPGRY 806
PAA+A P D A KAAQ AALQA IQA++AN++ P A ++ RDFTL LD+QGRQ+D G+V++ PV TLK N + + NPYLAH + D L+ + AR +++ FV+ G +
Sbjct: 32 PAASAPAVPAGLDDAALKAAQLAALQASIQAQIANASXXXXXX---------------PXXXXXAPAPKKARDFTLRLDEQGRQIDETGKVIQSEFKPVVTLKANVDAQRRANNPYLAHKLGADKEIDARLQAKVARPKRSTFSFVKEGTF 167
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A6G0X223_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X223_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.320e-8 Identity = 47/114 (41.23%), Postives = 58/114 (50.88%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVVK--LGPVQTLKVN---------RHKGENPYLAHGASGGSD-----DP--SLRHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNA 887
LLLDDQGR +DA G V+ + PV TLK N K NPYLAH D DP ++ R+ R K FV+ G + K GD MR RE ++ L G + GR NA
Sbjct: 126 LLLDDQGRHIDAMGNVLTDTVAPVATLKANIGVSDAQKEPQKPVNPYLAHRTIDKEDRLDSVDPRVKVKKRETRGAKNFAFVKQGTFIKQGDQMRAREAKKMLAGFSSGRNPNA 239
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A1V9Y985_9STRA (U4/U6 small nuclear ribonucleoprotein Prp3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y985_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 4.120e-8 Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVV--KLGPVQTLKVN----------RHKGENPYLAHGASGGSD-----DPSL--RHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNA 887
LLLDDQGR +DA G V+ K+ PV TLK N + K NPYL++ D DP L R+R R K FV+ G Y G+ +R RE ++ L G + GR NA
Sbjct: 106 LLLDDQGRHIDASGNVIEEKVAPVATLKANIGVSEIEKAKQKKPVNPYLSYRVIEREDRLDAMDPRLKTRNRDTRGAKNFTFVKQGTYIXXGEQLRAREAKKMLAGFSSGRNPNA 220
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: G4YM89_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YM89_PHYSP) HSP 1 Score: 65.1 bits (157), Expect = 6.310e-8 Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVVK----LGPVQTLKVNR---------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
LLLD+QGR++DA G VV + PV TLK N+ K +NPYL+H G D DP L+ R+ R +K FV G Y K + +R R+ ++ + G GR
Sbjct: 147 LLLDEQGREIDAAGNVVAEKPTVAPVATLKANQAGARGSDAVKKNQNPYLSHLTVGEEDKLEAVDPRLKVTKRETRARKTFNFVAQGTYVKQAEQVRARDAKKMMAGFTSGR 258
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: H3GNM0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNM0_PHYRM) HSP 1 Score: 64.3 bits (155), Expect = 9.870e-8 Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVVK----LGPVQTLKVNR--------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
LLLD+QGR+VDA G VV + PV TLK N+ K +NPYL+H D DP L+ R+ R +K FV G Y K + +R R+ ++ + G GR
Sbjct: 137 LLLDEQGREVDANGNVVAEKPMVAPVATLKANQGAPKSGRAKKNQNPYLSHRTVDEEDKLETVDPRLKVTKRETRARKTFNFVTQGTYVKQAEQVRARDAKKMMAGFTSGR 247
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: K3W6M6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6M6_GLOUD) HSP 1 Score: 64.3 bits (155), Expect = 1.010e-7 Identity = 45/117 (38.46%), Postives = 57/117 (48.72%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVVK---LGPVQTLKVNRHKGE---------------NPYLAHGASGGSD-----DPSL--RHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
LLLD+QGRQ+DA G V+ PV TLK N+ G NPYL+H D DP L + R+ R K+ QFV G Y K G+ +R RE ++ L G GR
Sbjct: 156 LLLDEQGRQIDAAGNVIADPLPAPVATLKANQSSGTTAARSSSTQQKQQNANPYLSHRTVDKEDAVDAVDPRLTIKKRETRGAKSFQFVTHGTYIKQGEQVRAREAKKMLAGFTSGR 272
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A421H1J6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H1J6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.780e-7 Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVV----KLGPVQTLKVNR----------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
LLLD+QGR++DA G VV + PV TLK N+ +NPYL+H D DP L+ R+ R +K FV G Y K G+ +R R+ ++ + G GR
Sbjct: 149 LLLDEQGREIDAAGNVVVEKPTVAPVATLKANQGGAKRSAEGNRSNQNPYLSHRTVDEEDKLEAVDPRLKVTKRETRARKTFNFVAQGTYVKQGEQVRARDAKKMMAGFTSGR 261
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A6A3TVC5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TVC5_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 3.170e-7 Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVVK----LGPVQTLKVNR---------HKGENPYLAHGASGGSD-----DPSLR--HRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGR 875
LLLD+QGR++DA G VV + PV TLK N+ K +NPYL+H D DP L+ R+ R +K FV G Y K + +R R+ ++ + G GR
Sbjct: 149 LLLDEQGREIDAAGNVVAEKPTVAPVATLKANQGGARGGDAVKKSKNPYLSHRTVDEEDKLETVDPRLKVTKRETRARKTFNFVAQGTYVKQAEQVRARDAKKMMAGFTSGR 260
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Match: A0A067CSB0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSB0_SAPPC) HSP 1 Score: 62.0 bits (149), Expect = 5.650e-7 Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 3
Query: 600 LLLDDQGRQVDAEGRVV--KLGPVQTLKVN-----------RHKGENPYLAHGASGGSD-----DPSL--RHRQARTQKALQFVEPGRYSKLGDTMRFREQRQFLRGRAEGRANNA 887
LLLD++GR +DA+G V+ K+ PV TLK N + K NPYL+ + D DP L R+R R K FV+ G Y G+ +R RE ++ L G + GR NA
Sbjct: 115 LLLDNEGRHIDADGNVIEEKVAPVATLKANLGAGAEAEKAKQKKPVNPYLSFRSVDHRDRVDTVDPRLKTRNRDTRGAKNFTFVKQGTYIXXGEQLRAREAKKMLAGFSSGRNPNA 230 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7700.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7700.1.1 >prot_P-wetherbeei_contig7700.1.1 ID=prot_P-wetherbeei_contig7700.1.1|Name=mRNA_P-wetherbeei_contig7700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp MTAGGNGHPPQSNGVSNGNRPAAAAGPTPDLVAAKAAQHAALQAKIQARLback to top mRNA from alignment at P-wetherbeei_contig7700:178..1148- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7700.1.1 ID=mRNA_P-wetherbeei_contig7700.1.1|Name=mRNA_P-wetherbeei_contig7700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=971bp|location=Sequence derived from alignment at P-wetherbeei_contig7700:178..1148- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7700:178..1148- >mRNA_P-wetherbeei_contig7700.1.1 ID=mRNA_P-wetherbeei_contig7700.1.1|Name=mRNA_P-wetherbeei_contig7700.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig7700:178..1148- (Phaeothamnion wetherbeei SAG_119_79)back to top |