mRNA_P-wetherbeei_contig12891.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12891.1.1
Unique NamemRNA_P-wetherbeei_contig12891.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.140e-17
Identity = 89/221 (40.27%), Postives = 107/221 (48.42%), Query Frame = 1 
Query:  424 PLATPQLPFDPAAFNFYKASPAEFMFAYRTAADIAAEAGAVXXXXXXXXXXXXXXAGVAGMGRRRRRLGAAAVNG---VENDGEAASTPAVRSLGRRLMAAAAGAIFGAASAAEMEAGRRNLWEEGAGGQRRYDCVA-------VTTAAPVEHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQ 1056
            P    + P+DP AFNFYKASP EF+ +Y  +     E  A XXX                 GRR +    A  NG   VE D EAA + A +       AA   A  G      + + RR     G G Q   D VA        +TA+P + AVLVN RP+G  S LL P    +  QRATA +LAV  DFA AL   P  R+GFN  G+ ASVNHLHFQ
Sbjct:  285 PAGPAESPWDPYAFNFYKASPLEFVLSYTPSFRYEREIAAAXXX----------------XGRRTQ----AEDNGGVLVEADVEAAGSAAAK-------AARGSAAVGEGKTVTITSARRG---GGVGLQMNVDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYPHSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQ 475
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 8.190e-17
Identity = 87/211 (41.23%), Postives = 110/211 (52.13%), Query Frame = 1 
Query:  424 PLATPQLPFDPAAFNFYKASPAEFMFAYRTAADIAAEAGAVXXXXXXXXXXXXXXAGVAGMGRRRRRLGAAAVNGVENDGEAASTPAVRSLGRRLMAAAAGAIFGAASAAEMEAGRRNLWEEGAGGQRRYDCVAVTTAAPVEHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQ 1056
            P    + P+DP+AFNFYKASP EF+ +Y  +     E      XXXXXXXXX         GRR +      V+ VE D +AA + A ++      AA  G     A  + +  G   L  +  G      C   +TA+P + AVLVN RP+G  S LL P    +  QRATA +LAV  DFA AL   P  R+GFN  G+ ASVNHLHFQ
Sbjct:  191 PAGPAESPWDPSAFNFYKASPLEFVLSYTPSFRYGREIPEAASXXXXXXXXX--------XGRRTQAKDNDGVS-VETDAKAAGSTAAKAA---RGAAEVGEGKAVAITSALRGGGVGLPMKLDGVAPAVGCGEASTASPPQDAVLVNIRPVGPVSLLLTPGYAHSHNQRATAYSLAVAIDFAEALRVDPGFRLGFNSAGSSASVNHLHFQ 389
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: F2U6X3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6X3_SALR5)

HSP 1 Score: 74.7 bits (182), Expect = 3.530e-11
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:  850 HAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQ 1056
            HAVLVN  P+ +YSGLL+PF  E   Q  TA+AL VG  FA  L GS  +RVGFN + AGASVNHLHFQ
Sbjct:  166 HAVLVNKSPLSKYSGLLVPFLREQRNQVMTADALLVGLGFANRLQGSG-IRVGFNSLYAGASVNHLHFQ 233
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A0A6V2QQN2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QQN2_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 8.030e-10
Identity = 42/73 (57.53%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:  850 HAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAAL---GGSPELRVGFNGMGAGASVNHLHFQV 1059
            HAV  N RP GR   LLLPF G   PQ A   ALAV   F  AL   GG   +R+GFN +GA ASVNHLHFQV
Sbjct:  278 HAVYANARPFGRLCFLLLPFYGRDRPQVADGSALAVALHFMGALAARGGGGGVRLGFNSLGACASVNHLHFQV 350
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A9VA94_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VA94_MONBE)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-9
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  847 EHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQ 1056
            +HAVL+NP P+G  SGLL+P+  E  PQ  T +AL  GF FA  L  +P  R+ FN + AGASVNHLHFQ
Sbjct:  176 QHAVLINPFPLGWLSGLLVPYLLEHRPQVMTRDALTAGFAFAQRLQ-NPYTRLAFNSLEAGASVNHLHFQ 244
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A0A4D9DF77_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF77_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.170e-8
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:  850 HAVLVNPRPIGRYSGLLLPFAGEALPQ--RATAEALAVGFDFAAAL--------GGSPELRVGFNGMGAGASVNHLHFQ 1056
            HAVL+NP PIG  SG+L+PF  E  PQ    + +A+ VG  FA+ L          S  LRVGFN +GAGAS+ HLHFQ
Sbjct:  236 HAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAMTVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQ 314
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: X6NVT4_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NVT4_RETFI)

HSP 1 Score: 63.9 bits (154), Expect = 1.860e-7
Identity = 41/98 (41.84%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  772 RNLWEEGAGGQRRYDCVAVTTAAPVEHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPE---LRVGFNGMGAGASVNHLHFQ 1056
            +  W   + G     C     A    H +LVN  PIG YSGL  P+  + LPQ  T E L VG  F A           RVGFN +GA ASVNH HFQ
Sbjct:  313 KQQWPVVSNGVDSIQCDPFVFAKTDTHLLLVNRFPIGNYSGLFTPYFWQKLPQVLTKELLHVGLQFNAMFLSQSHKGTFRVGFNSLGAMASVNHFHFQ 410
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A0A7S3GKE7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GKE7_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 7.390e-7
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  847 EHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQVIF 1065
            +HAV+VN  P+ R   L++PF    LPQ  T  A++VG  FA+ +     + VGFN +GA ASVNHLHFQ  F
Sbjct:  103 KHAVIVNASPVCRSHCLIVPFRSHLLPQVLTRGAVSVGLRFASDMHSGGGV-VGFNSIGAFASVNHLHFQAYF 174
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A0A7L4JHG0_9PASS (GDP-D-glucose phosphorylase 1 (Fragment) n=42 Tax=Passeriformes TaxID=9126 RepID=A0A7L4JHG0_9PASS)

HSP 1 Score: 58.9 bits (141), Expect = 5.160e-6
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  856 VLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQVIF 1065
            V +N  P+GR   LLLP     LPQ  TA  L    + AA L G P  RVGFNG+G GASVNHLH   ++
Sbjct:  135 VAINASPLGRGHVLLLPEPARRLPQVLTAPVLRGALE-AALLSGHPGFRVGFNGLGGGASVNHLHMHGLY 203
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BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Match: A0A8C2UDP0_COTJA (GDP-D-glucose phosphorylase 1 n=2 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2UDP0_COTJA)

HSP 1 Score: 58.9 bits (141), Expect = 5.380e-6
Identity = 37/72 (51.39%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:  835 AAPVEHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALAVGFDFAAALGGSPELRVGFNGMGAGASVNHLH 1050
            AAP E  V +N  P+ R   LLLP  G  LPQR T E L  G      L   P  RVGFN +GA ASVNHLH
Sbjct:  136 AAPAELLVAINVSPLLRGHVLLLPEPGLFLPQRLTPELLLAGLQLVL-LSARPGFRVGFNSLGASASVNHLH 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12891.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG89_9PHAE2.140e-1740.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G939_ECTSI8.190e-1741.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F2U6X3_SALR53.530e-1162.32Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6V2QQN2_HETAK8.030e-1057.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A9VA94_MONBE1.020e-955.71Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A4D9DF77_9STRA2.170e-850.63Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
X6NVT4_RETFI1.860e-741.84Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S3GKE7_9EUKA7.390e-747.95Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7L4JHG0_9PASS5.160e-650.00GDP-D-glucose phosphorylase 1 (Fragment) n=42 Tax=... [more]
A0A8C2UDP0_COTJA5.380e-651.39GDP-D-glucose phosphorylase 1 n=2 Tax=Coturnix jap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12891contigP-wetherbeei_contig12891:96..1376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G939
Preferred nameGDPGP1
PFAMsDUF4922
Model size1098
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K14190,ko:K15630
KEGG ReactionR07678
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006950,GO:0006952,GO:0006979,GO:0008150,GO:0008152,GO:0008194,GO:0008905,GO:0008928,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010035,GO:0010193,GO:0010471,GO:0010472,GO:0010473,GO:0010474,GO:0010475,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016772,GO:0016779,GO:0019318,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033037,GO:0033554,GO:0035251,GO:0042221,GO:0042364,GO:0042493,GO:0042545,GO:0042742,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045229,GO:0046364,GO:0046394,GO:0046527,GO:0046677,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0070568,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0080046,GO:0080048,GO:0098542,GO:1901576,GO:1901700
Exons2
Evalue1.48e-18
EggNOG OGsKOG2720@1|root,KOG2720@2759|Eukaryota
EC2.7.7.69,2.7.7.78
DescriptionGDP-D-glucose phosphorylase activity
Cds size744
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.26469-UTR-P-wetherbeei_contig12891:95..4491683185965.26469-UTR-P-wetherbeei_contig12891:95..449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12891 96..449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.274626-CDS-P-wetherbeei_contig12891:449..8881683185965.274626-CDS-P-wetherbeei_contig12891:449..888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12891 450..888 +
1683185965.2820096-CDS-P-wetherbeei_contig12891:1071..13761683185965.2820096-CDS-P-wetherbeei_contig12891:1071..1376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12891 1072..1376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12891.1.1prot_P-wetherbeei_contig12891.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12891 450..1376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12891.1.1

>prot_P-wetherbeei_contig12891.1.1 ID=prot_P-wetherbeei_contig12891.1.1|Name=mRNA_P-wetherbeei_contig12891.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MHQVHSMFRPNVCHYCRCCRLSAPLATPQLPFDPAAFNFYKASPAEFMFA
YRTAADIAAEAGAVAAEADAAKAAAEAAAGVAGMGRRRRRLGAAAVNGVE
NDGEAASTPAVRSLGRRLMAAAAGAIFGAASAAEMEAGRRNLWEEGAGGQ
RRYDCVAVTTAAPVEHAVLVNPRPIGRYSGLLLPFAGEALPQRATAEALA
VGFDFAAALGGSPELRVGFNGMGAGASVNHLHFQVIFYVFFNYWNAG*
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mRNA from alignment at P-wetherbeei_contig12891:96..1376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12891.1.1 ID=mRNA_P-wetherbeei_contig12891.1.1|Name=mRNA_P-wetherbeei_contig12891.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1281bp|location=Sequence derived from alignment at P-wetherbeei_contig12891:96..1376+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGTGAATGCACTGCGACTTTTTTGCTGTGAAACTCGCTCTGTTGCGG
CGACAAAAACTATCGACCTTTACACCAAGTATACAACGATGCCTGAGTTC
GGTTAGACGCCGTTCTTCTTGTGGGCCAGTTTCTGCCTGTCTTCGTGCCA
TTCCGACCTGCTCTTTCCATACATTGGTTGCTTTCTGTTGAAACTGCGGC
AGAGGCTGTCTGTCACTGGCCCGTTCGGCCCTCATCGCCGTTGCCAAAAA
AGCCTGCACTTTGCAACCAATCGCGATATCTTAAGTCGCTTGTCCGGTTG
AGGTACTCTGAAAGGAGTTCTCTTTGCTCCGTTTTCCCTCCTAGTTTCCC
TAAAATGCACCAAGTGCACTCCATGTTTCGACCCAATGTCTGCCATTACT
GCCGCTGCTGCCGCCTCTCTGCACCCCTCGCCACGCCGCAGCTCCCGTTC
GACCCGGCCGCCTTCAACTTCTACAAGGCGTCGCCTGCGGAGTTCATGTT
CGCCTACCGCACGGCTGCCGATATCGCCGCCGAGGCAGGCGCCGTCGCGG
CGGAAGCCGACGCCGCAAAGGCCGCCGCCGAAGCCGCCGCCGGCGTCGCC
GGCATGGGGCGCCGCCGCCGCCGGCTCGGTGCTGCGGCTGTAAACGGCGT
CGAAAACGACGGTGAGGCCGCGAGCACTCCTGCCGTCCGGAGTTTGGGCA
GAAGGCTTATGGCGGCGGCCGCGGGAGCGATTTTCGGCGCCGCGTCGGCT
GCTGAGATGGAGGCCGGCCGACGGAACCTTTGGGAGGAAGGCGGTGATGG
GGACCTGCCTGCGGATCCCGATGCATTGGCGAAGGAGCAGCTGTTGCGTG
GCCCGGTCAGCAAAGCCGGCGGCGGCAACCATGGCGGCGGCAACGGCGGC
GGCGGCAACGACGACGGCCCGGCCGCCGGCGGAAACGCGCTGGCGACGGC
GGCGGCAATGACAGCCGCGGCGGTAGCGGGCGGGCAGCGGCGCTACGACT
GCGTCGCCGTCACGACGGCGGCGCCGGTCGAGCACGCGGTGCTGGTTAAC
CCACGGCCAATTGGGCGCTACTCGGGGCTGCTGCTGCCCTTCGCGGGCGA
GGCGCTGCCGCAGCGGGCGACGGCGGAGGCACTGGCGGTGGGTTTTGACT
TCGCGGCGGCGCTGGGCGGATCCCCCGAGCTACGGGTCGGGTTCAACGGC
ATGGGGGCCGGCGCCTCGGTCAACCACCTTCACTTCCAGGTAATTTTTTA
CGTTTTTTTCAATTATTGGAATGCCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12891:96..1376+

>mRNA_P-wetherbeei_contig12891.1.1 ID=mRNA_P-wetherbeei_contig12891.1.1|Name=mRNA_P-wetherbeei_contig12891.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig12891:96..1376+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCAAGTGCACTCCATGTTTCGACCCAATGTCTGCCATTACTGCCG
CTGCTGCCGCCTCTCTGCACCCCTCGCCACGCCGCAGCTCCCGTTCGACC
CGGCCGCCTTCAACTTCTACAAGGCGTCGCCTGCGGAGTTCATGTTCGCC
TACCGCACGGCTGCCGATATCGCCGCCGAGGCAGGCGCCGTCGCGGCGGA
AGCCGACGCCGCAAAGGCCGCCGCCGAAGCCGCCGCCGGCGTCGCCGGCA
TGGGGCGCCGCCGCCGCCGGCTCGGTGCTGCGGCTGTAAACGGCGTCGAA
AACGACGGTGAGGCCGCGAGCACTCCTGCCGTCCGGAGTTTGGGCAGAAG
GCTTATGGCGGCGGCCGCGGGAGCGATTTTCGGCGCCGCGTCGGCTGCTG
AGATGGAGGCCGGCCGACGGAACCTTTGGGAGGAAGGCGCGGGCGGGCAG
CGGCGCTACGACTGCGTCGCCGTCACGACGGCGGCGCCGGTCGAGCACGC
GGTGCTGGTTAACCCACGGCCAATTGGGCGCTACTCGGGGCTGCTGCTGC
CCTTCGCGGGCGAGGCGCTGCCGCAGCGGGCGACGGCGGAGGCACTGGCG
GTGGGTTTTGACTTCGCGGCGGCGCTGGGCGGATCCCCCGAGCTACGGGT
CGGGTTCAACGGCATGGGGGCCGGCGCCTCGGTCAACCACCTTCACTTCC
AGGTAATTTTTTACGTTTTTTTCAATTATTGGAATGCCGGATGA
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