mRNA_P-wetherbeei_contig77.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig77.1.1
Unique NamemRNA_P-wetherbeei_contig77.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig77.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig77contigP-wetherbeei_contig77:590..1040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000020823
PFAMsDEK_C,Med26
Model size353
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000229
EggNOG OGs2CMU2@1|root,2QRYI@2759|Eukaryota,1MCWK@121069|Pythiales
Descriptionfunction. Source PGD
Cds size234
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.2925975-UTR-P-wetherbeei_contig77:589..6621683186995.2925975-UTR-P-wetherbeei_contig77:589..662Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig77 590..662 +
1683186995.3041854-UTR-P-wetherbeei_contig77:762..8061683186995.3041854-UTR-P-wetherbeei_contig77:762..806Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig77 763..806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.3176687-CDS-P-wetherbeei_contig77:806..10401683186995.3176687-CDS-P-wetherbeei_contig77:806..1040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig77 807..1040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig77.1.1prot_P-wetherbeei_contig77.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig77 807..1040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig77.1.1

>prot_P-wetherbeei_contig77.1.1 ID=prot_P-wetherbeei_contig77.1.1|Name=mRNA_P-wetherbeei_contig77.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MTRLTKVLEGAVDRSVAAEKAVRALGKLQAIDATVELLKDSGAGRVVAAL
RKHADADVAKAAKRVKKHWLGQLNLGGG
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mRNA from alignment at P-wetherbeei_contig77:590..1040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig77.1.1 ID=mRNA_P-wetherbeei_contig77.1.1|Name=mRNA_P-wetherbeei_contig77.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=451bp|location=Sequence derived from alignment at P-wetherbeei_contig77:590..1040+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACAAGATGAAGAGCGGCACAAGCAGCGGCTGGCGGAGATGAAGCAGT
CCAAGGAGCCCGTCTTCCTGCAGGCGCTGCAGCGGGACCGGGAAAAAGAA
GCTCCGGCCGCCGCCGCCGCAGCAGCAGCATCGACCAAGCCGACGCCAAA
GAAGGGCCGCAGCCCCGCTGCAGCGGCAGCTGGCGGCGGCGACAGCGGCG
AGACGCCGCTCCAGCGGATGACGCGGCTGACCAAGGTGCTGGAGGGCGCT
GTGGACCGGTCGGTTGCGGCGGAGAAGGCGGTCCGGGCGCTCGGCAAGTT
GCAGGCAATCGACGCGACCGTGGAGCTCCTGAAGGATTCCGGCGCCGGAC
GCGTCGTCGCCGCGCTGCGAAAGCACGCCGACGCCGACGTGGCCAAGGCG
GCGAAGCGCGTCAAGAAGCACTGGCTGGGGCAGCTGAACCTCGGCGGCGG
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig77:590..1040+

>mRNA_P-wetherbeei_contig77.1.1 ID=mRNA_P-wetherbeei_contig77.1.1|Name=mRNA_P-wetherbeei_contig77.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig77:590..1040+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGGCTGACCAAGGTGCTGGAGGGCGCTGTGGACCGGTCGGTTGC
GGCGGAGAAGGCGGTCCGGGCGCTCGGCAAGTTGCAGGCAATCGACGCGA
CCGTGGAGCTCCTGAAGGATTCCGGCGCCGGACGCGTCGTCGCCGCGCTG
CGAAAGCACGCCGACGCCGACGTGGCCAAGGCGGCGAAGCGCGTCAAGAA
GCACTGGCTGGGGCAGCTGAACCTCGGCGGCGGC
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