mRNA_P-wetherbeei_contig77.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig77.2.1
Unique NamemRNA_P-wetherbeei_contig77.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig77.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig77contigP-wetherbeei_contig77:1068..2238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1171
Hectar predicted targeting categoryother localisation
Exons1
Cds size690
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.2373164-UTR-P-wetherbeei_contig77:1067..12411683186995.2373164-UTR-P-wetherbeei_contig77:1067..1241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig77 1068..1241 +
1683186995.2667463-UTR-P-wetherbeei_contig77:1931..22381683186995.2667463-UTR-P-wetherbeei_contig77:1931..2238Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig77 1932..2238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.24826-CDS-P-wetherbeei_contig77:1241..19311683186995.24826-CDS-P-wetherbeei_contig77:1241..1931Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig77 1242..1931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig77.2.1prot_P-wetherbeei_contig77.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig77 1242..1931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig77.2.1

>prot_P-wetherbeei_contig77.2.1 ID=prot_P-wetherbeei_contig77.2.1|Name=mRNA_P-wetherbeei_contig77.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
MADGREDAAAASSSGEQKPLKKAAADAAKVASTASNGQAAAATAAQAPLT
TTAAPVATSKTPAPDAAAVHSALPLARRRAQALLSAMLGTSDKETLRCRT
IEVELWNSFGPAAAPAGTAAAAAGTAAAAAADYSAAANGANGASDGAAAN
GNGVAAKPNAATAAASESSGGGDSGDLPSAEYCSRLRAAVFGMEGEAGRK
LRDKTLTGVILPQDFVVKSVEELRTMARL*
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mRNA from alignment at P-wetherbeei_contig77:1068..2238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig77.2.1 ID=mRNA_P-wetherbeei_contig77.2.1|Name=mRNA_P-wetherbeei_contig77.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1171bp|location=Sequence derived from alignment at P-wetherbeei_contig77:1068..2238+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGGCGGGGGCACTGCGGAAGGCGGCGCCGATGTTGCTGGCGAGGTGTC
GGCCGCCGCTGTCTCTCCGGCTGCTGCAAAGGCGCCTGCTCCAGCCGAGG
CCGTGACGGAGGCAACAGATGCTGCCAAAGCGCCAGCCGGTTTGAAGGGT
ACGGAATCGGCCAAATCAGCGGACATGGCCGACGGCCGGGAGGATGCGGC
AGCGGCCAGCAGCAGCGGCGAGCAAAAACCACTGAAAAAAGCCGCCGCTG
ATGCGGCGAAGGTTGCCAGCACAGCCAGCAACGGTCAAGCCGCGGCGGCG
ACGGCGGCACAGGCGCCGCTAACGACGACAGCGGCCCCGGTCGCGACGTC
GAAGACGCCGGCGCCGGATGCCGCTGCTGTCCACTCTGCGCTTCCGCTGG
CGCGGCGCCGTGCTCAGGCGCTGCTCTCCGCGATGCTCGGGACTTCTGAC
AAGGAGACCCTCAGATGTCGCACCATCGAGGTGGAGCTCTGGAACTCCTT
CGGGCCTGCGGCGGCACCGGCGGGGACGGCGGCGGCGGCGGCGGGGACGG
CAGCGGCGGCGGCGGCAGACTACAGCGCTGCTGCAAACGGCGCAAACGGG
GCTTCGGACGGCGCCGCTGCGAACGGCAATGGTGTCGCCGCTAAACCCAA
CGCCGCTACTGCTGCCGCTTCTGAAAGTAGCGGCGGCGGCGACAGCGGCG
ACTTGCCGAGCGCCGAGTACTGTAGTCGCCTCCGCGCGGCGGTGTTCGGC
ATGGAGGGCGAGGCTGGGCGCAAGCTGCGGGACAAGACGCTGACGGGCGT
TATCCTGCCGCAGGACTTTGTCGTCAAATCTGTCGAAGAGTTGCGGACCA
TGGCCCGTCTGTGAGGAGAACGAAGGAGGAAAGAAGGAGGAAGGAAGGGG
CATGGCGGGCTCCAGGATTCGGCTGTATTGCGCGGGGGCCAGAGCTATAG
CGTTGTGGGTGACTGTGTGTCTTTTTGCATGAACCATGCTGCTGGAAAAG
GCGGCAAAGGAGAAGTGCAAGGCGTCAGAGCGTACAGGCGCCATCAACGG
CAACATGGACAGCGGCAGCATGCAACTAGCTTGTAGCGGTGGCTGGCGGG
GATGCGCAACGGCAGCAGACCTAATCAGCACGTGTTGCTCGGCTTGAGGT
TAATTCACCTCTTTCTCTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig77:1068..2238+

>mRNA_P-wetherbeei_contig77.2.1 ID=mRNA_P-wetherbeei_contig77.2.1|Name=mRNA_P-wetherbeei_contig77.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig77:1068..2238+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGGCCGGGAGGATGCGGCAGCGGCCAGCAGCAGCGGCGAGCA
AAAACCACTGAAAAAAGCCGCCGCTGATGCGGCGAAGGTTGCCAGCACAG
CCAGCAACGGTCAAGCCGCGGCGGCGACGGCGGCACAGGCGCCGCTAACG
ACGACAGCGGCCCCGGTCGCGACGTCGAAGACGCCGGCGCCGGATGCCGC
TGCTGTCCACTCTGCGCTTCCGCTGGCGCGGCGCCGTGCTCAGGCGCTGC
TCTCCGCGATGCTCGGGACTTCTGACAAGGAGACCCTCAGATGTCGCACC
ATCGAGGTGGAGCTCTGGAACTCCTTCGGGCCTGCGGCGGCACCGGCGGG
GACGGCGGCGGCGGCGGCGGGGACGGCAGCGGCGGCGGCGGCAGACTACA
GCGCTGCTGCAAACGGCGCAAACGGGGCTTCGGACGGCGCCGCTGCGAAC
GGCAATGGTGTCGCCGCTAAACCCAACGCCGCTACTGCTGCCGCTTCTGA
AAGTAGCGGCGGCGGCGACAGCGGCGACTTGCCGAGCGCCGAGTACTGTA
GTCGCCTCCGCGCGGCGGTGTTCGGCATGGAGGGCGAGGCTGGGCGCAAG
CTGCGGGACAAGACGCTGACGGGCGTTATCCTGCCGCAGGACTTTGTCGT
CAAATCTGTCGAAGAGTTGCGGACCATGGCCCGTCTGTGA
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