mRNA_P-wetherbeei_contig7636.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7636.1.1
Unique NamemRNA_P-wetherbeei_contig7636.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A3D3UJE5_9PROT (2Fe-2S ferredoxin n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UJE5_9PROT)

HSP 1 Score: 191 bits (485), Expect = 2.860e-61
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            MPKVTYIE +G  H V VASGTTGRDAAI+NDIPGIDGDCGGVCACATCHVYVDPAW+D+VGRA  GEMEAELLQFAEDFR+ SRLACQI IT  LDGLVLNIP GQH
Sbjct:    1 MPKVTYIEADGATHTVDVASGTTGRDAAIDNDIPGIDGDCGGVCACATCHVYVDPAWIDKVGRAVEGEMEAELLQFAEDFRDNSRLACQIDITDALDGLVLNIPSGQH 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A3C0TVU7_9PROT (2Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TVU7_9PROT)

HSP 1 Score: 186 bits (472), Expect = 2.750e-59
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            MPKVT+I  +GT HV+ VASGTT RDAA++NDIPGIDGDCGGVCACATCHVYVDPAWLD+VGR   GEMEA+LLQFAEDFRE SRLACQI IT + DGL+LNIP GQH
Sbjct:    1 MPKVTFIAHDGTEHVLNVASGTTARDAALDNDIPGIDGDCGGVCACATCHVYVDPAWLDKVGRVTSGEMEADLLQFAEDFRENSRLACQITITDQFDGLILNIPAGQH 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A523FLP0_9PROT (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FLP0_9PROT)

HSP 1 Score: 158 bits (399), Expect = 3.710e-48
Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            MP +T+IE +GT+HVV + +GTT RDAAI+NDIPGIDGDCGG CACATCHV+V   W+D  G+A P   EAELLQFA+D+++ SRLACQI +T +LDGLVL+ P GQH
Sbjct:    1 MPSITFIEHDGTKHVVEIDAGTTARDAAIDNDIPGIDGDCGGNCACATCHVFVADEWIDATGKAEPESNEAELLQFADDYKDNSRLACQIPVTDDLDGLVLHTPMGQH 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A7HU18_PARL1 (Ferredoxin n=11 Tax=Proteobacteria TaxID=1224 RepID=A7HU18_PARL1)

HSP 1 Score: 151 bits (382), Expect = 1.440e-45
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            MP + +IE +G  + + V SGTT RDAA+NN +PGIDGDCGG CACATCHV+VD AW+ R G A PG MEA LLQFAE   E SRLACQI +T +LDGL+L IP GQH
Sbjct:    1 MPTIIFIEPDGVEYPIAVKSGTTARDAAVNNSVPGIDGDCGGECACATCHVHVDAAWMARTGMAEPGGMEANLLQFAEGSTENSRLACQITMTDDLDGLMLRIPDGQH 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A246JJN0_9SPHN (2Fe-2S ferredoxin n=6 Tax=Sphingopyxis TaxID=165697 RepID=A0A246JJN0_9SPHN)

HSP 1 Score: 146 bits (368), Expect = 1.960e-43
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            M KVT++  +GTR  V +A G T R+AA+ ND+PGIDGDCGGVCACATCHV+VDPAW+D+VGR A G  EA+LLQFAE   E SRLACQI I   ++GL+L++P  Q+
Sbjct:    1 MVKVTFVSSDGTRRAVDIAEGETAREAALFNDVPGIDGDCGGVCACATCHVFVDPAWIDKVGRLAEGAAEADLLQFAEGANEYSRLACQIPIEPLMEGLILHVPEQQY 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A0A7PK12_9SPHN (Ferredoxin, 2Fe-2S n=10 Tax=Proteobacteria TaxID=1224 RepID=A0A0A7PK12_9SPHN)

HSP 1 Score: 145 bits (365), Expect = 5.620e-43
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            M KVT++  +GTR  V +A G T R+AA+ ND+PGIDGDCGGVCACATCHV+VDPAW+DRVGR   G  EAELLQFAE   E SRLACQI +   ++GL+L++P  Q+
Sbjct:    1 MVKVTFVSSDGTRREVEIAEGETAREAALFNDVPGIDGDCGGVCACATCHVHVDPAWIDRVGRLVEGAAEAELLQFAEGANEYSRLACQIPMVEGVEGLILHVPEQQY 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A0F2RRG1_9PROT (2Fe-2S ferredoxin n=2 Tax=Hyphomonas TaxID=85 RepID=A0A0F2RRG1_9PROT)

HSP 1 Score: 142 bits (359), Expect = 4.610e-42
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            M KVT++  NGTR  V VA G T R+AA+ N +PGIDGDCGGVCACATCHV++DPAW+D VGR   G  EAELLQFAE   + SRLACQI I   L+GLVL++P  Q+
Sbjct:    1 MVKVTFVSSNGTRREVEVAEGETAREAALFNGVPGIDGDCGGVCACATCHVHIDPAWIDIVGRLMEGAAEAELLQFAEGANQYSRLACQIPIVTTLEGLVLHVPAQQY 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: UPI00131C5635 (2Fe-2S iron-sulfur cluster-binding protein n=1 Tax=Acidisphaera sp. S103 TaxID=1747223 RepID=UPI00131C5635)

HSP 1 Score: 142 bits (358), Expect = 6.540e-42
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            MPK+TYIE NGT H V V  G +    AINN++PGID DCGG CACATCHVY+D AWLDR+G   PG  EA +L FA   +  SRL+CQI++  +LDGLV+ +P GQH
Sbjct:    1 MPKITYIEHNGTAHTVQVPVGKSVMQGAINNNVPGIDADCGGECACATCHVYIDAAWLDRIGLPVPGSQEASMLSFAAVTQPDSRLSCQIEVADDLDGLVVRMPEGQH 108          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A081BFK7_9HYPH (Ferredoxin, 2Fe-2S n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BFK7_9HYPH)

HSP 1 Score: 141 bits (355), Expect = 1.760e-41
Identity = 68/108 (62.96%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            MPKVTYIE NGT H V VA G +  + AINN IPGIDGDCGG CACATCHVYVDPAWL + G  +  EME  +L FA +  E SRL CQIK++ ELDGL++ +P  QH
Sbjct:    1 MPKVTYIEHNGTIHEVEVADGYSVMEGAINNAIPGIDGDCGGSCACATCHVYVDPAWLAKTGERS--EMEESMLDFAAEVEENSRLGCQIKMSAELDGLIVRMPEAQH 106          
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Match: A0A0W1IGM1_9SPHN (2Fe-2S ferredoxin n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A0W1IGM1_9SPHN)

HSP 1 Score: 141 bits (355), Expect = 1.870e-41
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCHVYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLVLNIPPGQH 324
            M KVT++  +G R  V +ASG T R+AA+ N++PGIDGDCGG CACATCHV+VDP W+DRVG  A G MEA+LLQFAE   E SRLACQI +   LDGLVL++P  Q+
Sbjct:    1 MVKVTFVTHDGYRFPVEIASGMTAREAALFNNVPGIDGDCGGQCACATCHVHVDPTWIDRVGCLADGSMEADLLQFAEGTTEESRLACQITLDDRLDGLVLHVPEQQY 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7636.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D3UJE5_9PROT2.860e-6184.262Fe-2S ferredoxin n=2 Tax=Alphaproteobacteria bact... [more]
A0A3C0TVU7_9PROT2.750e-5979.632Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bact... [more]
A0A523FLP0_9PROT3.710e-4865.742Fe-2S iron-sulfur cluster binding domain-containi... [more]
A7HU18_PARL11.440e-4564.81Ferredoxin n=11 Tax=Proteobacteria TaxID=1224 RepI... [more]
A0A246JJN0_9SPHN1.960e-4362.042Fe-2S ferredoxin n=6 Tax=Sphingopyxis TaxID=16569... [more]
A0A0A7PK12_9SPHN5.620e-4362.04Ferredoxin, 2Fe-2S n=10 Tax=Proteobacteria TaxID=1... [more]
A0A0F2RRG1_9PROT4.610e-4262.962Fe-2S ferredoxin n=2 Tax=Hyphomonas TaxID=85 RepI... [more]
UPI00131C56356.540e-4259.262Fe-2S iron-sulfur cluster-binding protein n=1 Tax... [more]
A0A081BFK7_9HYPH1.760e-4162.96Ferredoxin, 2Fe-2S n=1 Tax=Tepidicaulis marinus Ta... [more]
A0A0W1IGM1_9SPHN1.870e-4162.042Fe-2S ferredoxin n=2 Tax=Sphingomonadaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7636contigP-wetherbeei_contig7636:373..699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_2782
PFAMsFer2
Model size327
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04755
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-46
EggNOG OGsCOG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2U97J@28211|Alphaproteobacteria
Descriptionferredoxin
Cds size327
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186992.7301972-CDS-P-wetherbeei_contig7636:372..6991683186992.7301972-CDS-P-wetherbeei_contig7636:372..699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7636 373..699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7636.1.1prot_P-wetherbeei_contig7636.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7636 373..699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7636.1.1

>prot_P-wetherbeei_contig7636.1.1 ID=prot_P-wetherbeei_contig7636.1.1|Name=mRNA_P-wetherbeei_contig7636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MPKVTYIEDNGTRHVVTVASGTTGRDAAINNDIPGIDGDCGGVCACATCH
VYVDPAWLDRVGRAAPGEMEAELLQFAEDFRETSRLACQIKITGELDGLV
LNIPPGQH*
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mRNA from alignment at P-wetherbeei_contig7636:373..699-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7636.1.1 ID=mRNA_P-wetherbeei_contig7636.1.1|Name=mRNA_P-wetherbeei_contig7636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig7636:373..699- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTAAAGTGACTTATATCGAGGACAACGGGACCAGGCATGTCGTGAC CGTAGCCAGCGGCACTACCGGTCGCGACGCCGCGATCAACAACGACATTC CGGGGATCGACGGCGATTGCGGCGGGGTTTGCGCCTGCGCCACCTGCCAC GTCTATGTGGACCCCGCATGGCTCGACAGGGTAGGCAGGGCCGCGCCAGG CGAAATGGAAGCCGAACTGCTTCAATTCGCCGAAGATTTCCGCGAAACCA GCCGCCTTGCCTGTCAGATCAAAATCACCGGCGAACTTGACGGCCTGGTC CTGAATATCCCCCCAGGCCAGCACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7636:373..699-

>mRNA_P-wetherbeei_contig7636.1.1 ID=mRNA_P-wetherbeei_contig7636.1.1|Name=mRNA_P-wetherbeei_contig7636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig7636:373..699- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTAAAGTGACTTATATCGAGGACAACGGGACCAGGCATGTCGTGAC
CGTAGCCAGCGGCACTACCGGTCGCGACGCCGCGATCAACAACGACATTC
CGGGGATCGACGGCGATTGCGGCGGGGTTTGCGCCTGCGCCACCTGCCAC
GTCTATGTGGACCCCGCATGGCTCGACAGGGTAGGCAGGGCCGCGCCAGG
CGAAATGGAAGCCGAACTGCTTCAATTCGCCGAAGATTTCCGCGAAACCA
GCCGCCTTGCCTGTCAGATCAAAATCACCGGCGAACTTGACGGCCTGGTC
CTGAATATCCCCCCAGGCCAGCACTAA
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