mRNA_P-wetherbeei_contig7609.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7609.1.1
Unique NamemRNA_P-wetherbeei_contig7609.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7609.1.1 vs. uniprot
Match: D8LH14_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH14_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.240e-12
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 VVRGIIRGLGSYNILINPKYKEAFGLTDSFAYHHKRVDSIIKILDEHPSLRDVRK 165
            VVRGI+RGL SYNIL+NPKYKE+FGL+D FA  HKRV S+  +L+EHPS+  +R+
Sbjct:  915 VVRGIMRGLPSYNILLNPKYKESFGLSDGFACQHKRVGSVFMMLNEHPSILVMRE 969
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BLAST of mRNA_P-wetherbeei_contig7609.1.1 vs. uniprot
Match: A0A6U1MHI4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MHI4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.600e-5
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 RGIIRGLGSYNILINPKYKEAFGLTDSFAYHHKRVDSIIKILDEHPSLRDVRKGG 171
            RG+++G+ SYN+L NP Y++AFGLT SF   HK + S+ +++++  S+  + K G
Sbjct:  175 RGLMKGVPSYNLLHNPVYRDAFGLTQSFTRKHKHISSMHEMIEKRDSMNKLLKHG 229
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BLAST of mRNA_P-wetherbeei_contig7609.1.1 vs. uniprot
Match: A0A7S1ZCD2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCD2_TRICV)

HSP 1 Score: 55.5 bits (132), Expect = 5.270e-5
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 RGIIRGLGSYNILINPKYKEAFGLTDSFAYHHKRVDSI 120
            RG+I+G+ +YNIL NPKY+EAFG++  FA +HK V SI
Sbjct:  126 RGVIKGIATYNILQNPKYQEAFGISAEFAQNHKHVSSI 163
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BLAST of mRNA_P-wetherbeei_contig7609.1.1 vs. uniprot
Match: A0A7S2FYS3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYS3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.840e-5
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 RGIIRGLGSYNILINPKYKEAFGLTDSFAYHHKRVDSIIKI-----LDEHPSLRDVRK 165
            RG+IRGL SYN+L+NP Y+EAF +  +FA  H+ VDS+++       ++  S  D RK
Sbjct:   73 RGLIRGLPSYNVLLNPVYREAFRIDLNFAGKHRHVDSVLQYDMETRAEKRASGHDARK 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7609.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH14_ECTSI6.240e-1265.45PHM7_cyt domain-containing protein n=2 Tax=Ectocar... [more]
A0A6U1MHI4_9STRA3.600e-541.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZCD2_TRICV5.270e-560.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2FYS3_9STRA7.840e-544.83Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7609contigP-wetherbeei_contig7609:2..2724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LH14
Model size2612
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.15e-13
EggNOG OGs2CY1P@1|root,2S1C7@2759|Eukaryota
Cds size1821
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.00987-CDS-P-wetherbeei_contig7609:1..18221683186991.00987-CDS-P-wetherbeei_contig7609:1..1822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7609 2..1822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186991.0213091-UTR-P-wetherbeei_contig7609:1822..22891683186991.0213091-UTR-P-wetherbeei_contig7609:1822..2289Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7609 1823..2289 +
1683186991.0323904-UTR-P-wetherbeei_contig7609:2400..27241683186991.0323904-UTR-P-wetherbeei_contig7609:2400..2724Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7609 2401..2724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7609.1.1prot_P-wetherbeei_contig7609.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7609 2..1822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7609.1.1

>prot_P-wetherbeei_contig7609.1.1 ID=prot_P-wetherbeei_contig7609.1.1|Name=mRNA_P-wetherbeei_contig7609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=607bp
VVRGIIRGLGSYNILINPKYKEAFGLTDSFAYHHKRVDSIIKILDEHPSL
RDVRKGGNGKGGGRRFKGGSGGKDGGYGGGGGAASGSVDDNRLSYMEGGH
FHEHFDPEVTPRRAIATRFMLLTPRMTPPPRTPFADDYEVRTVDNLEAGE
FGANEQGGCDFGGEGGEGGEGGYGIEGEGDGGCDGEEGNGSGDGDGDFEC
GEDVELAGEGITTNDCGADTGGVDGDVYVGGLGASSELGTSSELGVSSEY
TITSGAEDGSAVAATTVTTEARDETGAKSGVTPDAGASGEAAVAKTTVTT
PDTSAAVTGMEMPSVLETETLLGTSGGGDAVAVLDAPMQTAGASADAAAI
SGSRKGSAASSAAAAAGAAVESGASAASIAAVETKNSIRSLTGGTATLAA
ADSSVTGAATPDAIASTPLGSDTADAAEVEEEDAAATAAATAEAVAGSSS
IEEETKEATPAASAATAASTEAQRVFESAAVPATVEARAQSGSACSSFTT
TQVSSVAICEDSAVQANTGAEAKPISVAATAPSAPEPSTFAEASSATAPA
PSEAPAPSEAPAEAAEATIPPPPAAAETQEEEGGFGSFGRMFQRALSRVG
NSEGTL*
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mRNA from alignment at P-wetherbeei_contig7609:2..2724+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7609.1.1 ID=mRNA_P-wetherbeei_contig7609.1.1|Name=mRNA_P-wetherbeei_contig7609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2723bp|location=Sequence derived from alignment at P-wetherbeei_contig7609:2..2724+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTTCGCGGCATCATCCGCGGTTTGGGCAGCTACAACATTCTCATCAA
CCCCAAGTACAAGGAGGCGTTCGGTTTAACCGACAGCTTCGCGTACCACC
ACAAGCGCGTCGACTCCATCATCAAGATTCTCGACGAGCACCCGTCGCTG
CGGGACGTACGCAAGGGCGGGAATGGTAAAGGTGGCGGCCGCCGCTTCAA
GGGCGGCAGCGGCGGCAAAGATGGCGGCTACGGCGGCGGCGGCGGCGCCG
CCAGCGGCAGCGTCGACGACAACCGCCTTTCGTACATGGAGGGCGGCCAC
TTCCACGAGCACTTCGATCCCGAAGTCACGCCTCGCCGTGCAATTGCCAC
TCGCTTCATGCTTCTGACGCCCCGCATGACGCCGCCGCCGCGGACGCCGT
TTGCTGACGACTACGAGGTGCGCACCGTGGACAACCTCGAGGCCGGAGAG
TTCGGCGCGAATGAACAGGGCGGCTGTGACTTCGGGGGTGAAGGTGGTGA
AGGCGGTGAAGGCGGCTACGGCATCGAGGGTGAAGGTGACGGGGGCTGCG
ATGGCGAGGAAGGCAATGGCAGTGGCGACGGCGACGGGGACTTCGAATGC
GGTGAGGATGTGGAGCTCGCAGGCGAAGGAATCACCACCAACGACTGCGG
CGCCGACACCGGCGGCGTTGATGGCGACGTCTATGTCGGGGGACTCGGCG
CAAGCTCTGAACTGGGCACAAGCTCTGAGCTCGGCGTAAGCTCTGAGTAC
ACCATCACTTCGGGTGCGGAGGACGGCAGCGCCGTCGCCGCCACCACCGT
CACCACAGAGGCAAGAGACGAGACGGGCGCCAAGTCGGGCGTTACGCCGG
ACGCCGGTGCTTCGGGCGAAGCTGCGGTGGCGAAGACAACGGTGACGACG
CCAGATACAAGTGCAGCTGTCACCGGTATGGAGATGCCGTCGGTCCTTGA
AACCGAAACGCTGCTCGGAACTAGCGGCGGTGGCGATGCTGTGGCGGTGC
TCGATGCACCGATGCAGACAGCGGGAGCAAGCGCCGATGCGGCCGCTATC
TCCGGTAGCCGAAAGGGCAGCGCAGCTTCATCAGCGGCGGCGGCGGCGGG
GGCGGCAGTGGAGTCGGGCGCATCGGCAGCGTCGATTGCGGCGGTGGAGA
CAAAGAACAGCATCCGCAGTTTGACGGGGGGAACGGCCACGTTGGCGGCC
GCCGACAGCTCGGTCACAGGGGCGGCAACACCGGATGCCATTGCCAGCAC
CCCGCTCGGCAGCGACACGGCCGACGCTGCCGAGGTAGAGGAAGAGGATG
CGGCGGCGACGGCGGCGGCGACGGCGGAAGCGGTGGCTGGGAGCAGCAGC
ATCGAGGAGGAGACGAAGGAGGCCACGCCTGCGGCGTCGGCAGCTACTGC
CGCGTCCACAGAGGCGCAACGGGTCTTCGAGAGCGCGGCGGTGCCAGCGA
CCGTGGAGGCCCGAGCCCAGAGTGGTTCTGCTTGTTCCTCATTCACAACT
ACTCAGGTATCCAGCGTCGCCATTTGCGAGGACTCGGCTGTGCAGGCAAA
CACTGGAGCCGAGGCAAAACCCATTTCCGTGGCGGCGACGGCGCCGTCGG
CCCCGGAGCCCAGTACGTTCGCAGAGGCATCGTCCGCCACGGCGCCGGCA
CCGTCGGAAGCACCGGCACCGTCGGAAGCACCGGCCGAGGCAGCAGAGGC
AACCATTCCACCGCCGCCAGCCGCCGCCGAAACGCAAGAGGAGGAGGGCG
GTTTTGGTAGCTTCGGGCGCATGTTCCAGCGGGCGCTGTCGCGGGTAGGC
AATTCCGAAGGGACTCTGTGATCAGGCCGGACTGTGCTGCTGCTGTTGCG
GTGGCAGCCGCCAGGCAGGACGGCGATGACGGCGACTGCAGCGGCGACCG
CAGTGGAGACAGCAGCAGCGATGATGGCAGTGGCGGCGGCAACGGCAGCG
ACGGAAGTGGCGGCGGCAATCGCGGGCACGAGTGGCAGCAGCAGTCACGA
AAGCAGCGGCAACAGGAACAGGTGCAGGTGGTGGATGTCGGAGCAGCAGT
GTCGCCGCCGTCGCCGCACCAGCCCAGGAGGGCATGGCTACTTTAGTAAC
GAGGGTGGCGGTTCTCTGGAAAGCCCGTGGAGGGACGGGCCTTCCGAACT
TGCCGTTCTCTTACATCCATCATCTTATCGATGAAACGGGTATCCACATG
GGTGGGAGAGCATGATGAGCCCAGGCCGCCGCAGGCAACGGCAGCGGCAG
TAGCGTTAATCGTAGTGGCGACGTCGAAGGCAGTGGCAGCTTCAGCAGCG
GCAATGGTAGCGGCAGCATGAAGGCGGTGGCGGCAGCGGCGTCAGCAGCT
GTGACGGCGGCGGCGACGGCTGCAGCAGCGGCAACGGCGGCGGCTGCAGC
AACGGCAACGGCGGCGGCGATGGTAGCGGCGGCGGTGGTGGCGGCGACGG
CGGCGGCAACAGCGGCAGCGGCGGCAACACAGCAGTGCCCGGTCCACAAT
AATCCAACGGTTGCCAAAGCAGCAGCTTTGAAGGCAGCGTCGGCGTAACT
GGATGGAATAGGGATAGCGCAGGCGCTGAGAAAGGGAGAAATGCGAGTGG
TGATGGTCTGCGTACCGGTTTTGGGCCGATGGTTCGCACCCGTGAGGGGC
GAGCCCTTGGCTCATGCAACGGGGGAGGAGAGGGGGAGGAACGGGTCCTG
AACGGGCAGCGAGCAAGAGGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7609:2..2724+

>mRNA_P-wetherbeei_contig7609.1.1 ID=mRNA_P-wetherbeei_contig7609.1.1|Name=mRNA_P-wetherbeei_contig7609.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1821bp|location=Sequence derived from alignment at P-wetherbeei_contig7609:2..2724+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTTCGCGGCATCATCCGCGGTTTGGGCAGCTACAACATTCTCATCAA
CCCCAAGTACAAGGAGGCGTTCGGTTTAACCGACAGCTTCGCGTACCACC
ACAAGCGCGTCGACTCCATCATCAAGATTCTCGACGAGCACCCGTCGCTG
CGGGACGTACGCAAGGGCGGGAATGGTAAAGGTGGCGGCCGCCGCTTCAA
GGGCGGCAGCGGCGGCAAAGATGGCGGCTACGGCGGCGGCGGCGGCGCCG
CCAGCGGCAGCGTCGACGACAACCGCCTTTCGTACATGGAGGGCGGCCAC
TTCCACGAGCACTTCGATCCCGAAGTCACGCCTCGCCGTGCAATTGCCAC
TCGCTTCATGCTTCTGACGCCCCGCATGACGCCGCCGCCGCGGACGCCGT
TTGCTGACGACTACGAGGTGCGCACCGTGGACAACCTCGAGGCCGGAGAG
TTCGGCGCGAATGAACAGGGCGGCTGTGACTTCGGGGGTGAAGGTGGTGA
AGGCGGTGAAGGCGGCTACGGCATCGAGGGTGAAGGTGACGGGGGCTGCG
ATGGCGAGGAAGGCAATGGCAGTGGCGACGGCGACGGGGACTTCGAATGC
GGTGAGGATGTGGAGCTCGCAGGCGAAGGAATCACCACCAACGACTGCGG
CGCCGACACCGGCGGCGTTGATGGCGACGTCTATGTCGGGGGACTCGGCG
CAAGCTCTGAACTGGGCACAAGCTCTGAGCTCGGCGTAAGCTCTGAGTAC
ACCATCACTTCGGGTGCGGAGGACGGCAGCGCCGTCGCCGCCACCACCGT
CACCACAGAGGCAAGAGACGAGACGGGCGCCAAGTCGGGCGTTACGCCGG
ACGCCGGTGCTTCGGGCGAAGCTGCGGTGGCGAAGACAACGGTGACGACG
CCAGATACAAGTGCAGCTGTCACCGGTATGGAGATGCCGTCGGTCCTTGA
AACCGAAACGCTGCTCGGAACTAGCGGCGGTGGCGATGCTGTGGCGGTGC
TCGATGCACCGATGCAGACAGCGGGAGCAAGCGCCGATGCGGCCGCTATC
TCCGGTAGCCGAAAGGGCAGCGCAGCTTCATCAGCGGCGGCGGCGGCGGG
GGCGGCAGTGGAGTCGGGCGCATCGGCAGCGTCGATTGCGGCGGTGGAGA
CAAAGAACAGCATCCGCAGTTTGACGGGGGGAACGGCCACGTTGGCGGCC
GCCGACAGCTCGGTCACAGGGGCGGCAACACCGGATGCCATTGCCAGCAC
CCCGCTCGGCAGCGACACGGCCGACGCTGCCGAGGTAGAGGAAGAGGATG
CGGCGGCGACGGCGGCGGCGACGGCGGAAGCGGTGGCTGGGAGCAGCAGC
ATCGAGGAGGAGACGAAGGAGGCCACGCCTGCGGCGTCGGCAGCTACTGC
CGCGTCCACAGAGGCGCAACGGGTCTTCGAGAGCGCGGCGGTGCCAGCGA
CCGTGGAGGCCCGAGCCCAGAGTGGTTCTGCTTGTTCCTCATTCACAACT
ACTCAGGTATCCAGCGTCGCCATTTGCGAGGACTCGGCTGTGCAGGCAAA
CACTGGAGCCGAGGCAAAACCCATTTCCGTGGCGGCGACGGCGCCGTCGG
CCCCGGAGCCCAGTACGTTCGCAGAGGCATCGTCCGCCACGGCGCCGGCA
CCGTCGGAAGCACCGGCACCGTCGGAAGCACCGGCCGAGGCAGCAGAGGC
AACCATTCCACCGCCGCCAGCCGCCGCCGAAACGCAAGAGGAGGAGGGCG
GTTTTGGTAGCTTCGGGCGCATGTTCCAGCGGGCGCTGTCGCGGGTAGGC
AATTCCGAAGGGACTCTGTGA
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