mRNA_P-wetherbeei_contig7593.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7593.2.1
Unique NamemRNA_P-wetherbeei_contig7593.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7593.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7593contigP-wetherbeei_contig7593:1829..2615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size787
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.1084113-UTR-P-wetherbeei_contig7593:1828..19711683186990.1084113-UTR-P-wetherbeei_contig7593:1828..1971Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7593 1829..1971 -
1683186990.1278946-UTR-P-wetherbeei_contig7593:2424..26151683186990.1278946-UTR-P-wetherbeei_contig7593:2424..2615Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7593 2425..2615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186990.1167738-CDS-P-wetherbeei_contig7593:1971..24241683186990.1167738-CDS-P-wetherbeei_contig7593:1971..2424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7593 1972..2424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7593.2.1prot_P-wetherbeei_contig7593.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7593 1972..2424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7593.2.1

>prot_P-wetherbeei_contig7593.2.1 ID=prot_P-wetherbeei_contig7593.2.1|Name=mRNA_P-wetherbeei_contig7593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MASRSTRSGATGGPCRLHAAAAGGGRRGAGCRRPWASRTCCVASVRVCPY
QHARWQTHLRRQQQRQGLDCERQRVPQVDARRPQNEARLQAPRPQVWRLR
WGHRAALSDAQEDGAAGAVPEGARRRRLHAAAGAVHPRPPQDAVVGVADA
*
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mRNA from alignment at P-wetherbeei_contig7593:1829..2615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7593.2.1 ID=mRNA_P-wetherbeei_contig7593.2.1|Name=mRNA_P-wetherbeei_contig7593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=787bp|location=Sequence derived from alignment at P-wetherbeei_contig7593:1829..2615- (Phaeothamnion wetherbeei SAG_119_79)
CGAAGGAGGAATCGAAACTGCAGTAAAGTGCTGAGCAACCAACAAGCGAT
CAAATGTTGGGTTGGATGCCAGCCGGTTAGTTGAATGGTCTTATCGGAAC
ATCAAATTTCCAGTGAACAGCACACCCATGAGATTGATGCCGATTGAATT
ATCTGTCATACCAACAAGTATTGCGCGGTCAGCAGATATGCATGGCTTCA
AGGTCAACTCGTTCCGGAGCAACGGGAGGGCCGTGTCGACTGCACGCCGC
GGCTGCCGGTGGCGGACGACGCGGCGCTGGTTGTCGTCGACCCTGGGCGT
CAAGGACGTGCTGCGTCGCGTCCGTCCGCGTCTGCCCGTACCAGCACGCA
CGCTGGCAAACCCATCTCCGTCGTCAGCAACAGCGACAAGGTCTGGACTG
TGAGCGGCAACGAGTACCGCAAGTCGACGCGCGCCGACCTCAAAACGAAG
CGCGACTGCAAGCGCCGCGGCCGCAAGTGTGGCGGCTACGGTGGGGCCAT
CGTGCGGCTCTCAGCGACGCGCAAGAGGACGGTGCGGCTGGAGCCGTACC
TGAGGGGGCTCGCCGACGTCGACTCCACGCTGCAGCGGGAGCTGTGCACC
CGCGGCCGCCGCAAGACGCGGTGGTTGGTGTCGCGGATGCGTGAGAGCTG
GGTGGAGGCGACGGCCAAGCGGCTGGTGGCGCCGACGCTGTGGCCCAGCA
GCGGCGTCGTGACGTTCGGAGACGCTCACTTCCAGGTGGGGCGGGGCGGC
GGCCCGAAGAAGGCGCTGGTGGCAGCAGCGGCGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7593:1829..2615-

>mRNA_P-wetherbeei_contig7593.2.1 ID=mRNA_P-wetherbeei_contig7593.2.1|Name=mRNA_P-wetherbeei_contig7593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig7593:1829..2615- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTCAAGGTCAACTCGTTCCGGAGCAACGGGAGGGCCGTGTCGACT
GCACGCCGCGGCTGCCGGTGGCGGACGACGCGGCGCTGGTTGTCGTCGAC
CCTGGGCGTCAAGGACGTGCTGCGTCGCGTCCGTCCGCGTCTGCCCGTAC
CAGCACGCACGCTGGCAAACCCATCTCCGTCGTCAGCAACAGCGACAAGG
TCTGGACTGTGAGCGGCAACGAGTACCGCAAGTCGACGCGCGCCGACCTC
AAAACGAAGCGCGACTGCAAGCGCCGCGGCCGCAAGTGTGGCGGCTACGG
TGGGGCCATCGTGCGGCTCTCAGCGACGCGCAAGAGGACGGTGCGGCTGG
AGCCGTACCTGAGGGGGCTCGCCGACGTCGACTCCACGCTGCAGCGGGAG
CTGTGCACCCGCGGCCGCCGCAAGACGCGGTGGTTGGTGTCGCGGATGCG
TGA
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