mRNA_P-wetherbeei_contig12880.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A835YRY5_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY5_9STRA) HSP 1 Score: 211 bits (536), Expect = 5.050e-63 Identity = 118/211 (55.92%), Postives = 143/211 (67.77%), Query Frame = 1 Query: 1 RVDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGLPQGVGPGQARVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHDWVDAL 633 RVDLLLA PRPLQLER+L ++S +GV +LVL NA+KV YFGSHL+++PE +R KLVEG TQSG + LPR + +RLKIFLED+LE L+P DT +RV AHP+RA N P AP RL + P+ ARV++AVGPEGGWDEP+EL++ GF VTLG RVLRSDVAV ALLALAHDWVD+L Sbjct: 218 RVDLLLAAPRPLQLERMLPMISSLGVDSLVLINAAKVEKSYFGSHLMRKPEALRAKLVEGCTQSGSTVLPRTTIKRRLKIFLEDELESLYPRDTCLRVIAHPTRAD-NTTP-------------AP-------------RLSTLPPPEKATAHTARVVIAVGPEGGWDEPFELEMFEAHGFVPVTLGTRVLRSDVAVNALLALAHDWVDSL 401
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: D8LR28_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR28_ECTSI) HSP 1 Score: 202 bits (515), Expect = 1.700e-59 Identity = 124/235 (52.77%), Postives = 145/235 (61.70%), Query Frame = 1 Query: 1 RVDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSR------------------AAPNVDPGV-ASIVLAAGDMHAPSGIRMEAAAAG---GQRLRDIGLPQGVGPGQARVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHDWVDALGA 639 +V L+LAVPRPLQLERIL VV+ +GV T+VL A KV YFGSH + P VR KL+EGL+QSGD+ +P V+VA+RLKIFLEDDL++ FP D +VR AHP+R AA GV A +V A G+ + AA R I P+G P VLVAVGPEGGW EP EL LL GF+AVTLG RVLRSDVAV ALLALAH WVD A Sbjct: 199 KVALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSGDTVMPEVMVARRLKIFLEDDLDRCFPRDRWVRALAHPTRLPAQVSRCAGGEATAAATAAGGEGVGVEAGVVAATAQSGRVDGVESDGAATAPVPALRFSQIEPPKGCDPADVGVLVAVGPEGGWVEPDELQLLQSFGFQAVTLGSRVLRSDVAVNALLALAHAWVDERAA 433
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A6V2MGD3_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2MGD3_9STRA) HSP 1 Score: 189 bits (479), Expect = 3.490e-54 Identity = 107/210 (50.95%), Postives = 137/210 (65.24%), Query Frame = 1 Query: 4 VDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGLPQGVGPGQA-----RVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHD 618 V L+LA+PRPLQL RIL +V+Q+GV LVL +A KV DYFGSHL ++P +RR L+EGL Q+GD +P+V V +RLK FLEDDL+ +FP D Y RV AHP R IVL G+ P A R+RD+ P+ Q R+++AVGPEGGW E YEL++ +CGF+ +TLG RVLRSDVAV +LL+LAHD Sbjct: 250 VSLILALPRPLQLGRILPMVAQLGVDHLVLTSAQKVPKDYFGSHLFRKPNELRRHLIEGLCQAGDVKIPKVTVVRRLKPFLEDDLDSMFPLDEYARVIAHPQRE---------KIVLENGETIIP---------APPLRMRDVVFPESSNTEQEQHQQPRIVLAVGPEGGWAEDYELNMFQKCGFQQITLGKRVLRSDVAVVSLLSLAHD 441
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: K0SJH0_THAOC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJH0_THAOC) HSP 1 Score: 177 bits (450), Expect = 1.130e-50 Identity = 108/234 (46.15%), Postives = 140/234 (59.83%), Query Frame = 1 Query: 1 RVDLLLAVPRPLQLER-----------------------ILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGLPQGVGPGQARVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHDWVDAL 633 RV LLLA+PRPLQL+R +L +V+Q+GV L+L NA KV DYFGSHL ++P ++R LVEGL+QSGD LPRV V+KRLKIFLED+L++LFP Y R+ AHP R G M S I++ A G P+ R+L+AVGPEGGW+EPYELD+ + GF+ +TLG RVLR+DVAV +LLALA++ +L Sbjct: 163 RVSLLLALPRPLQLQRWGLFIQCENSLEFWSLLTNFRIRLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRSQYERIIAHPQRKDET------------GRMTRMSDIKVNAT---------DGSPR-------RILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALANEACSSL 368
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A8J5WZT2_DIALT (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5WZT2_DIALT) HSP 1 Score: 174 bits (441), Expect = 5.360e-50 Identity = 118/230 (51.30%), Postives = 140/230 (60.87%), Query Frame = 1 Query: 1 RVDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPE---LVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDI-----GLPQGVGPGQ-ARVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHD----WVDALGANGGG 651 RVDLLLA+PRPLQLERIL +V+Q+GVGTLVLA A KV Y+GSHLL+ + R L++GL Q GD+ALPRV AK L + E++LE LFP D+ RV AHP RA V A G RLRD+ G P G G +R+L+AVGPEGGWDEP E+ LL R GF +TLG RVLRSDVAV +LLALAH+ W GA G G Sbjct: 104 RVDLLLALPRPLQLERILPMVAQLGVGTLVLAGARKVELSYWGSHLLRARDGAAHTRACLLDGLAQCGDTALPRVTRAKDLARWCEEELEALFPRDSVARVVAHPQRAG----------VPAHG------------------RLRDVPDPAAGTPAGRGARTPSRLLLAVGPEGGWDEPDEVALLERHGFMLITLGERVLRSDVAVVSLLALAHETVRCWPPDEGARGEG 305
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A7S1FT39_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT39_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.090e-48 Identity = 107/219 (48.86%), Postives = 129/219 (58.90%), Query Frame = 1 Query: 4 VDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTY---VRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGL--PQGVGPGQAR----VLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHDWVDAL 633 V L+LA PRPL L RIL VVS MGV LVL ASKV DYFGSHL ++ E + + LVEGL Q+GD LP V VA+RLKIFLEDDL+ +FP RV AHP+R SGI E R+RD+ L P +G + +L+AVGPEGGW+E YE+DL + GF VTLG R LR+DVAV LL LA D D++ Sbjct: 71 VSLILACPRPLALRRILPVVSMMGVDRLVLCGASKVPKDYFGSHLFRKEEEITKLLVEGLCQAGDVRLPEVTVARRLKIFLEDDLDDIFPPPERGGPTRVIAHPTR----------------------SGISKEKGGKIEMRVRDVELYAPSPMGSNDSSHHPSILLAVGPEGGWEEEYEIDLFRKHGFEVVTLGQRTLRTDVAVITLLGLAQDACDSV 267
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A448YWC9_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWC9_9STRA) HSP 1 Score: 172 bits (435), Expect = 2.170e-48 Identity = 100/208 (48.08%), Postives = 130/208 (62.50%), Query Frame = 1 Query: 1 RVDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLE-DDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGLPQGVGPGQARVLVAVGPEGGWDEPYELDLL-GRCGFRAVTLGVRVLRSDVAVTALLALAHD 618 RV LLLA+PRPLQ+ RIL ++SQ+GV LVL +A+KV DYFGSHL ++PE+++ KL+EGL Q+GD LP++ V + L FL D+ E+LFP D+ RV AHP R +P R+ ++ P G P R+LVAVGPEGGW+EP ELDL CGF+ +TLG R LRSDVAV LL+LAH+ Sbjct: 179 RVSLLLALPRPLQIGRILPMISQIGVDHLVLTSAAKVPKDYFGSHLFRKPEVLQEKLIEGLCQAGDVRLPKLRVVRNLSGFLRSDEFEELFPRDSCARVLAHPKRHDDPEEP---------------------------LRMGEVRFPSGSPP---RILVAVGPEGGWEEPGELDLFRNECGFQQITLGSRTLRSDVAVAGLLSLAHE 356
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: B7FST2_PHATC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST2_PHATC) HSP 1 Score: 169 bits (429), Expect = 6.390e-48 Identity = 94/205 (45.85%), Postives = 132/205 (64.39%), Query Frame = 1 Query: 4 VDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGLPQGVGPGQARVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHD 618 V L+LA+PRPLQL R+L ++SQMGV LVLA A KV DYFGSHLL+ PE +R KL+EGL Q+GD LP++ + + L+ FL ++++++FP + Y R AHP R + DP + S+ ++++ + P +R++VAVGPEGGW+EP ELD CGF+ +T+G RVLRSD AV +LL+LAHD Sbjct: 152 VSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKNQYARAIAHPQRTS---DP-MGSL----------------------KKMKQVEFPVK----SSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAHD 326
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A7S2KRF7_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRF7_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.090e-47 Identity = 97/189 (51.32%), Postives = 121/189 (64.02%), Query Frame = 1 Query: 1 RVDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTYVRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGLPQGVGPGQARVLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVR 567 +V LLLA+PRPLQL RIL +VSQ+GV L+L NA KV DYFGSH+ ++PE++R L+EGL QSGD LP V V KRLK+F+ED+L+ LFP + VRV AHP R ++D G P+ +RM DI P+ P R+LVAVGPEGGW EPYELD+ GF+ VTLG R Sbjct: 39 KVSLLLALPRPLQLSRILPMVSQLGVDQLILTNAMKVPKDYFGSHIFRKPEVLRGLLMEGLAQSGDVRLPNVHVTKRLKVFVEDELDVLFPPEEVVRVIAHPQRR--DID----------GREVGPAPLRMT----------DIEFPKSDKP--RRLLVAVGPEGGWKEPYELDMFRDKGFQQVTLGTR 203
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Match: A0A7S1BIA7_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIA7_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.700e-47 Identity = 107/219 (48.86%), Postives = 129/219 (58.90%), Query Frame = 1 Query: 4 VDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPELVRRKLVEGLTQSGDSALPRVVVAKRLKIFLEDDLEKLFPSDTY---VRVFAHPSRAAPNVDPGVASIVLAAGDMHAPSGIRMEAAAAGGQRLRDIGL--PQGVGPGQAR----VLVAVGPEGGWDEPYELDLLGRCGFRAVTLGVRVLRSDVAVTALLALAHDWVDAL 633 V L+LA PRPL L RIL VVS MGV LVL ASKV DYFGSHL ++ E + + LVEGL Q+GD LP V VA+RLKIFLEDDL+ +FP RV AHP+R SGI E R+RD+ L P +G + +L+AVGPEGGW+E YE+DL + GF VTLG R LR+DVAV LL LA D D++ Sbjct: 180 VSLILACPRPLALRRILPVVSMMGVDRLVLCGASKVPKDYFGSHLFRKEEEITKLLVEGLCQAGDVRLPEVTVARRLKIFLEDDLDDIFPPPERGGPTRVIAHPTR----------------------SGISKEKGGKIEMRVRDVELYAPSPMGSNDSSHHPSILLAVGPEGGWEEEYEIDLFRKHGFEVVTLGQRTLRTDVAVITLLGLAQDACDSV 376 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12880.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12880.1.2 >prot_P-wetherbeei_contig12880.1.2 ID=prot_P-wetherbeei_contig12880.1.2|Name=mRNA_P-wetherbeei_contig12880.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp RVDLLLAVPRPLQLERILAVVSQMGVGTLVLANASKVSPDYFGSHLLQRPback to top mRNA from alignment at P-wetherbeei_contig12880:2..1468- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12880.1.2 ID=mRNA_P-wetherbeei_contig12880.1.2|Name=mRNA_P-wetherbeei_contig12880.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig12880:2..1468- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12880:2..1468- >mRNA_P-wetherbeei_contig12880.1.2 ID=mRNA_P-wetherbeei_contig12880.1.2|Name=mRNA_P-wetherbeei_contig12880.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig12880:2..1468- (Phaeothamnion wetherbeei SAG_119_79)back to top |