mRNA_P-wetherbeei_contig7480.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7480.1.1
Unique NamemRNA_P-wetherbeei_contig7480.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: A0A537MWV6_9PROT (Amidohydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MWV6_9PROT)

HSP 1 Score: 122 bits (306), Expect = 1.070e-31
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            WDM TS+AA+LMRKDDYGIAVG PADLVVLDAPDAI ALRTVAPVLAAFKRGRRTVTREPVRLH+P
Sbjct:  348 WDMTTSAAARLMRKDDYGIAVGNPADLVVLDAPDAIMALRTVAPVLAAFKRGRRTVTREPVRLHRP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: A0A259MRE3_9PROT (Amidohydrolase n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MRE3_9PROT)

HSP 1 Score: 115 bits (289), Expect = 3.110e-29
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            WDM T +AAKLMRKDDYGIAVGGPADLVVLDAPDA+ ALRT+APVLAA+K GRRTVTR PV LH+P
Sbjct:  348 WDMTTKTAAKLMRKDDYGIAVGGPADLVVLDAPDAVMALRTIAPVLAAYKSGRRTVTRTPVELHRP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: A0A521LE36_9HYPH (Amidohydrolase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LE36_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 4.330e-29
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            WDM T++AAKLMRKDDYGI VGGPADLVVLDA D++TALRTVAPVLAA+K GRRTVTREPV+LH+P
Sbjct:  348 WDMTTATAAKLMRKDDYGIKVGGPADLVVLDATDSVTALRTVAPVLAAWKNGRRTVTREPVKLHRP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: A0A1H8TR51_9PROT (Cytosine deaminase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8TR51_9PROT)

HSP 1 Score: 111 bits (277), Expect = 1.670e-27
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            WDM T+SAA+LM   DYGIAVG PADLVVLDAPD +TALRTVAPVL A+KRGRRTVTREPVRLH+P
Sbjct:  348 WDMTTASAARLMGLKDYGIAVGAPADLVVLDAPDPVTALRTVAPVLMAYKRGRRTVTREPVRLHRP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: A0A4Q4CS43_9PROT (Amidohydrolase (Fragment) n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A4Q4CS43_9PROT)

HSP 1 Score: 96.3 bits (238), Expect = 2.610e-23
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            W M TS++AKL+RK DYGIAVG PADL+V+DAPD + A+R +AP L  FKRGRRT TR PV LH+P
Sbjct:  137 WGMFTSNSAKLLRKSDYGIAVGNPADLIVVDAPDPVAAIREIAPTLMGFKRGRRTFTRTPVVLHRP 202
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: UPI001FCBD641 (amidohydrolase family protein n=2 Tax=unclassified Roseomonas TaxID=2617492 RepID=UPI001FCBD641)

HSP 1 Score: 99.8 bits (247), Expect = 3.240e-23
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            WDM T++AA+L+R+DDYG+AVG PADLVVLDA     ALRTVAPVL A+KRGRRTVTRE  RLH+P
Sbjct:  348 WDMTTTNAARLLRQDDYGVAVGNPADLVVLDAETPEMALRTVAPVLMAYKRGRRTVTRERARLHRP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: UPI001ADFD918 (amidohydrolase family protein n=1 Tax=Falsiroseomonas frigidaquae TaxID=487318 RepID=UPI001ADFD918)

HSP 1 Score: 99.8 bits (247), Expect = 3.260e-23
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            W M T  +A+++R+ DYGIAVG PADLVV+DAPD + ALR +APVLAAFKRGRRTVTR+P  LH+P
Sbjct:  348 WGMITDDSARILRQQDYGIAVGAPADLVVVDAPDEVAALRGIAPVLAAFKRGRRTVTRQPAELHRP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: A0A1I3ZPH4_9PROT (Cytosine deaminase n=3 Tax=Acetobacteraceae TaxID=433 RepID=A0A1I3ZPH4_9PROT)

HSP 1 Score: 97.4 bits (241), Expect = 2.310e-22
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            W M T  AAKL+RK DYG+A+G PADLVV+DAPD I ALR ++P L  FKRGRRT TR+PV LHKP
Sbjct:  348 WGMITDGAAKLIRKQDYGVAIGNPADLVVVDAPDEIAALRQLSPTLMGFKRGRRTFTRQPVALHKP 413
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: UPI001FE25CF3 (amidohydrolase family protein n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001FE25CF3)

HSP 1 Score: 97.1 bits (240), Expect = 2.960e-22
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    7 MATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            M T+ AA+++R+DDYG+AVG PADL+VLDAPDA+ ALRT APVL AFKRG RTVTR PV+LH+P
Sbjct:  339 MITADAARVLRQDDYGVAVGMPADLIVLDAPDAVMALRTTAPVLHAFKRGVRTVTRAPVQLHRP 402
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BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Match: UPI001C2C3121 (amidohydrolase family protein n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2C3121)

HSP 1 Score: 96.7 bits (239), Expect = 4.300e-22
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 WDMATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRGRRTVTREPVRLHKP 198
            W M T+ +A+LMR+ DYGIAVG PADLV++DAPD + A+R VAPVLAAFKRGRR+VTR P  LH+P
Sbjct:  345 WGMFTTGSARLMRRKDYGIAVGNPADLVLVDAPDPVAAIREVAPVLAAFKRGRRSVTRAPAVLHRP 410
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7480.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537MWV6_9PROT1.070e-3190.91Amidohydrolase n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A259MRE3_9PROT3.110e-2983.33Amidohydrolase n=5 Tax=Alphaproteobacteria TaxID=2... [more]
A0A521LE36_9HYPH4.330e-2983.33Amidohydrolase n=1 Tax=Reyranella sp. TaxID=192929... [more]
A0A1H8TR51_9PROT1.670e-2781.82Cytosine deaminase n=3 Tax=Alphaproteobacteria Tax... [more]
A0A4Q4CS43_9PROT2.610e-2366.67Amidohydrolase (Fragment) n=1 Tax=Acetobacteraceae... [more]
UPI001FCBD6413.240e-2372.73amidohydrolase family protein n=2 Tax=unclassified... [more]
UPI001ADFD9183.260e-2368.18amidohydrolase family protein n=1 Tax=Falsiroseomo... [more]
A0A1I3ZPH4_9PROT2.310e-2268.18Cytosine deaminase n=3 Tax=Acetobacteraceae TaxID=... [more]
UPI001FE25CF32.960e-2271.88amidohydrolase family protein n=1 Tax=Roseomonas a... [more]
UPI001C2C31214.300e-2268.18amidohydrolase family protein n=1 Tax=Siccirubrico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7480contigP-wetherbeei_contig7480:62..262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121106.JQKB01000003_gene2592
PFAMsAmidohydro_3
Model size201
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00074,RC00514,RC00809
KEGG koko:K01485
KEGG ReactionR00974,R01411,R02922
KEGG Pathwayko00240,ko00330,ko01100,map00240,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.67e-20
EggNOG OGsCOG0402@1|root,COG0402@2|Bacteria,1MX34@1224|Proteobacteria,2U0IN@28211|Alphaproteobacteria,2JRJQ@204441|Rhodospirillales
EC3.5.4.1
DescriptionAmidohydrolase family
Cds size195
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.8028328-UTR-P-wetherbeei_contig7480:61..671683186983.8028328-UTR-P-wetherbeei_contig7480:61..67Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7480 62..67 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186983.8136005-CDS-P-wetherbeei_contig7480:67..2621683186983.8136005-CDS-P-wetherbeei_contig7480:67..262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7480 68..262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7480.1.1prot_P-wetherbeei_contig7480.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7480 68..262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7480.1.1

>prot_P-wetherbeei_contig7480.1.1 ID=prot_P-wetherbeei_contig7480.1.1|Name=mRNA_P-wetherbeei_contig7480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MATSSAAKLMRKDDYGIAVGGPADLVVLDAPDAITALRTVAPVLAAFKRG
RRTVTREPVRLHKP*
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mRNA from alignment at P-wetherbeei_contig7480:62..262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7480.1.1 ID=mRNA_P-wetherbeei_contig7480.1.1|Name=mRNA_P-wetherbeei_contig7480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig7480:62..262+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGACATGGCCACCTCGTCGGCCGCGAAGCTGATGCGCAAGGACGACTA
TGGCATTGCCGTCGGCGGTCCGGCCGACCTGGTCGTACTGGACGCGCCCG
ACGCGATCACCGCTCTCAGGACCGTTGCGCCCGTGCTGGCCGCCTTCAAG
CGCGGCCGGCGCACCGTGACCCGCGAACCCGTCCGCCTGCACAAGCCGTA
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7480:62..262+

>mRNA_P-wetherbeei_contig7480.1.1 ID=mRNA_P-wetherbeei_contig7480.1.1|Name=mRNA_P-wetherbeei_contig7480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig7480:62..262+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCTCGTCGGCCGCGAAGCTGATGCGCAAGGACGACTATGGCAT
TGCCGTCGGCGGTCCGGCCGACCTGGTCGTACTGGACGCGCCCGACGCGA
TCACCGCTCTCAGGACCGTTGCGCCCGTGCTGGCCGCCTTCAAGCGCGGC
CGGCGCACCGTGACCCGCGAACCCGTCCGCCTGCACAAGCCGTAG
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