mRNA_P-wetherbeei_contig745.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig745.2.1
Unique NamemRNA_P-wetherbeei_contig745.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig745.2.1 vs. uniprot
Match: A0A5J4Z2T5_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2T5_PORPP)

HSP 1 Score: 96.7 bits (239), Expect = 6.830e-22
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:   64 LADTSLISAKKAYFRYTPRISTGMVYFAKELKPAVDGGKWDIVAKAFVEEVTAQENSRRPDV-VKPKSSKIQRDLLDPMKIWAQTFAVKGTGPKLRALTAEIEKLEAALDTLEAVATMD 417
            LAD  L++AK++YFRY  R  +G+ +F  +L PAV   KWD V  AF     A++NS++ +  +  K S +QR L DP+ IWAQ+FA KGTGP  R L ++ ++ E  +D L  +A  D
Sbjct:   56 LADRDLMTAKRSYFRYATRAESGIDWFVTDLYPAVQEQKWDAVLDAFAPRSDARDNSKKAEYGIDRKVSNMQRFLFDPLTIWAQSFAEKGTGPNFRYLASQEKEFEEQMDRLRRIAKGD 174
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BLAST of mRNA_P-wetherbeei_contig745.2.1 vs. uniprot
Match: A0A0G4FPD6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FPD6_VITBC)

HSP 1 Score: 65.5 bits (158), Expect = 3.410e-10
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:   67 ADTSLISAKKAYFRYTPRISTGMVYFAKELKPAVDGGKWDIVAKAFVEEVTAQENSRRPDVVKPKSSKIQRDLLDPMKIWAQTFAVKGTGPKLRALTAEIEKLEAALDTL 396
            AD  L+SAK++YFRY PRI  G   +  +L+PA++   W  V   F             +V K  ++     L  PM+IW+ +F+ KGTG + + L +  ++ E ALD +
Sbjct:   43 ADIDLMSAKRSYFRYVPRIEKGRDMYVLDLRPAIESENWQAVQSFF-------------EVRKNDNTYASYYLTRPMEIWSTSFSEKGTGDRTKQLQSIAKEFEDALDKI 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig745.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5J4Z2T5_PORPP6.830e-2242.86Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A0G4FPD6_VITBC3.410e-1033.64Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig745contigP-wetherbeei_contig745:1131..1720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD30732
Model size417
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.68e-07
EggNOG OGs2E6W1@1|root,2SDIN@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004760.1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186982.1940022-CDS-P-wetherbeei_contig745:1130..12121683186982.1940022-CDS-P-wetherbeei_contig745:1130..1212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig745 1131..1212 -
1683186982.2062109-CDS-P-wetherbeei_contig745:1385..17201683186982.2062109-CDS-P-wetherbeei_contig745:1385..1720Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig745 1386..1720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig745.2.1prot_P-wetherbeei_contig745.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig745 1131..1720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig745.2.1

>prot_P-wetherbeei_contig745.2.1 ID=prot_P-wetherbeei_contig745.2.1|Name=mRNA_P-wetherbeei_contig745.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
RRDVLSAAGATIVAFSAALPVLADTSLISAKKAYFRYTPRISTGMVYFAK
ELKPAVDGGKWDIVAKAFVEEVTAQENSRRPDVVKPKSSKIQRDLLDPMK
IWAQTFAVKGTGPKLRALTAEIEKLEAALDTLEAVATMD
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mRNA from alignment at P-wetherbeei_contig745:1131..1720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig745.2.1 ID=mRNA_P-wetherbeei_contig745.2.1|Name=mRNA_P-wetherbeei_contig745.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=590bp|location=Sequence derived from alignment at P-wetherbeei_contig745:1131..1720- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGTGACGTTTTGTCAGCAGCCGGAGCCACCATCGTAGCTTTCTCGGC
CGCCCTTCCTGTGTTGGCTGACACGTCGCTGATCAGCGCAAAGAAAGCCT
ACTTCCGCTACACCCCAAGAATCTCCACCGGCATGGTGTACTTCGCCAAG
GAGCTGAAGCCGGCGGTCGACGGCGGGAAGTGGGACATTGTCGCCAAGGC
TTTTGTGGAAGAAGTCACCGCGCAGGAAAACTCCCGCCGTCCAGACGTCG
TTAAGCCGAAGAGCTCCAAGATTCAGCGCGACCTGCTGGACCCCATGAAG
ATTTGGGCCCAGACCTTTGCGGTGAAGGGGACGGGGTGAGTTTTCCTCGC
CGGCCCCGGCTGCATTTCGATCTCTCTAAAGCAGAAAAAATGTTTGGGCG
TTTCCAGCTGACCTTTTGCCAAGGTTGAACGCTCTGAGATTATGATTCCT
TGACTTGCCGGTCTGCGTATGCGTTTCTCATGCTCTTTTAATCATCCATC
AATGGCAGGCCGAAGCTTCGGGCGCTGACGGCCGAAATTGAGAAGTTGGA
GGCCGCGCTGGATACGCTGGAGGCGGTGGCGACGATGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig745:1131..1720-

>mRNA_P-wetherbeei_contig745.2.1 ID=mRNA_P-wetherbeei_contig745.2.1|Name=mRNA_P-wetherbeei_contig745.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig745:1131..1720- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGTGACGTTTTGTCAGCAGCCGGAGCCACCATCGTAGCTTTCTCGGC
CGCCCTTCCTGTGTTGGCTGACACGTCGCTGATCAGCGCAAAGAAAGCCT
ACTTCCGCTACACCCCAAGAATCTCCACCGGCATGGTGTACTTCGCCAAG
GAGCTGAAGCCGGCGGTCGACGGCGGGAAGTGGGACATTGTCGCCAAGGC
TTTTGTGGAAGAAGTCACCGCGCAGGAAAACTCCCGCCGTCCAGACGTCG
TTAAGCCGAAGAGCTCCAAGATTCAGCGCGACCTGCTGGACCCCATGAAG
ATTTGGGCCCAGACCTTTGCGGTGAAGGGGACGGGGCCGAAGCTTCGGGC
GCTGACGGCCGAAATTGAGAAGTTGGAGGCCGCGCTGGATACGCTGGAGG
CGGTGGCGACGATGGAC
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