mRNA_P-wetherbeei_contig7427.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7427.2.1
Unique NamemRNA_P-wetherbeei_contig7427.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 6.680e-69
Identity = 117/224 (52.23%), Postives = 160/224 (71.43%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFR-DSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKAL-LHDKKLAVFRLRLVCFYSKGQYEALAGADDDS 666
            MP+S+RN++V +TK   KGR  KQG++ E+R+ VD++  +YVFSF NLR+  +K+VR +FR DSRFF+GKNKVM LALG+S  DE+ +NL + S+ L+G VGLL T RP  +V+ YF ALAV D A  GF+   T  LP G L   PVSM+EQ R LG+V E+E+G++  R    MC AGE ++PE AK L L+DKK+A F + L+C +S+G++EALA   DD+
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDA 224          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.490e-67
Identity = 115/221 (52.04%), Postives = 157/221 (71.04%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFR-DSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKAL-LHDKKLAVFRLRLVCFYSKGQYEALAGAD 657
            MPKSKRNK V +T    KGRT KQ +I++IR+ +D H+ L+VF + N+R+  MKDVR +FR DSRFF+GKN +MQ ALG S  DE+++NL + SRH+RG  GLL+T+R +  V  YFA LAVP+FA+AGF    T  LP G  +  PV M++QLR LG+  E++D  + LR    MC+ G+ALTPEQAK L LHD+K++VF+++L C +S+G +E  A  D
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPTQW-PVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYAAPD 220          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: M4C3P0_HYAAE (Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3P0_HYAAE)

HSP 1 Score: 211 bits (537), Expect = 1.740e-65
Identity = 113/221 (51.13%), Postives = 154/221 (69.68%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSKGQYEALAGADD 660
            MPKSKR +   +T+A  KG   K+ +++ IR  VD +E  YVFSF N+RTSH KDVR +F+DSRFFLGKNKVM+LALGRS  DE+AENL R S+ + G+ GLL T++PR +V  YFA L+V D+  AGF+   T  +P G L     SMLE LR LG+  ++++G++ L   + +C++G+ LTPEQAK L+H D KLA F+L ++  +SK  YE L+ ADD
Sbjct:    1 MPKSKRQRTKTLTQANKKGNELKKNVVEAIRNAVDTYESAYVFSFQNMRTSHFKDVRMDFKDSRFFLGKNKVMKLALGRSKEDEYAENLFRLSKDVSGNTGLLFTNKPRDEVVDYFAKLSVSDYPRAGFVATDTITIPEGPLPQFIGSMLESLRGLGLPVDLKNGVVMLSRNYTICKSGQTLTPEQAKLLVHFDHKLAEFKLVMLSVWSKDTYERLS-ADD 220          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM)

HSP 1 Score: 203 bits (517), Expect = 1.850e-62
Identity = 106/220 (48.18%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSKGQYEALAGAD 657
            MPKSKR +   +T+A  KG   KQ +++ IR  VD +   YVFSF N+RT+H KDVR +F+DSRFFLGKNKVM+LALGRS  +E+AENL R S+ + G  GLL T++P  +V  YFA L+V D   +GF+   T  +P G L     SMLE LR LG+  ++++G+I L   + +C+ G+ LTPEQAK L+H D K+A F+L ++  +SK +Y+ +A  D
Sbjct:    1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDFKDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIAAED 220          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: K3WRY3_GLOUD (Ribosome assembly factor mrt4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRY3_GLOUD)

HSP 1 Score: 203 bits (516), Expect = 2.460e-62
Identity = 108/231 (46.75%), Postives = 155/231 (67.10%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSKGQYEALAGA-------DDDSD 669
            MPKSKR +   +TK   K    KQ +++ +RE VD +  L+ FSF N+RT+H K+VR +FRDSRFFLGKNKVM++ALGR+ A+E+A+NLS+ SR L G+VGLL TD+   +V +YF  L+  DFA +GF+   T  +P+G L     SM+E LR LG+  +++ G + L   + +C+ G+ LTPEQ K L+H D+K+A F+L ++  +SKG+Y+ LA A       DDD D
Sbjct:    1 MPKSKRQRTKALTKVDKKTSDLKQKVVESVREAVDSYATLFAFSFVNMRTNHFKEVRMDFRDSRFFLGKNKVMKVALGRTEAEEYADNLSKISRDLNGNVGLLFTDKTEDEVTEYFNKLSEKDFARSGFVATETVQVPQGPLPQFIGSMVESLRTLGLPVDLKKGNVVLNQDYTICKEGQTLTPEQCKLLVHFDRKMAEFKLVMLSSWSKGEYKRLADASVNAIEDDDDED 231          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.970e-62
Identity = 104/225 (46.22%), Postives = 152/225 (67.56%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSKGQYEALAGADDDSDG 672
            MPKSKR +   +T+A  KG   KQ ++  +R  VD +   YVFSF N+RT+H KDVR +F+DSRFFLGKNKVM+LALGRS  +E+AENL R S+ + G+ GLL T++P  +V  YF+ L+V D+  +GF+   T  +P G L     SM+E LR LG+  +++ G++ L   + +C+ G+A+TPEQAK L+H D+K+A F+L ++  +SK +Y+ LA  D  + G
Sbjct:    1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDFKDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLASEDATTTG 225          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.730e-61
Identity = 105/218 (48.17%), Postives = 155/218 (71.10%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSK-GQYEALA 648
            MPKSKR +   +T+ K+KG   K+G+++ IR  +D+++ +YVFSF N+RT+H K VRA+F DSRFFLGKNKVM++ALGR+  +E+AEN+ + +  + G VGLL+T++P  +V++YF  LAV DFA +GF+   T  +P G L     SM+E LR LG+  +++ G I L +   +C+AG+ LTPEQAK L+H DKK+A F ++L+  +S  G+YE LA
Sbjct:    1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADFSDSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLA 218          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA)

HSP 1 Score: 199 bits (507), Expect = 6.030e-61
Identity = 104/220 (47.27%), Postives = 147/220 (66.82%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSKGQYEALAGAD 657
            MPKSKR +   +T+A  KGR  K+ ++  IR  VD +E  Y FS+ N+RT+H K+VR +F+DSRFFLGKNKVM+LALGRS  +E+AENL R S+ + G+ GLL T++P  +V  YF  L+V D   +GF+   T  +P G L     SM+E LR LG+  ++++G I L   + +C+ G+ LTPEQAK L+H D K+A F+L ++  +SK +YE LA  D
Sbjct:    1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDFKDSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLATED 220          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: A0A1W0A1Q6_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1Q6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.770e-60
Identity = 100/218 (45.87%), Postives = 154/218 (70.64%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSK-GQYEALA 648
            MPKS+R +   +T+   KG   K+G+++ IR G+D+++ +YVFSF N+RT+H K VR +F DSRFFLGKNKVM++ALGRS  +E+A NL + +  + G VGLL+T++P A+V +YF  L+V D+A +GF+   T  +P G L     SM+E LRALG+  +++ G+ITL + + +C+ G  LTPEQAK L+H D K++ F ++++  ++K G+YE +A
Sbjct:    1 MPKSRRVRAKPLTQTNKKGAELKKGVVESIRSGIDEYDAVYVFSFENMRTNHFKVVRTDFNDSRFFLGKNKVMKVALGRSPEEEYASNLFKVAHDISGSVGLLMTNKPDAEVREYFNKLSVQDYAKSGFVATETVTIPAGPLPQFVGSMVESLRALGLPVDLKRGVITLNNDYTICKEGATLTPEQAKLLVHFDNKMSYFSVQMLSRWTKDGKYERIA 218          
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Match: A0A067D1N9_SAPPC (Ribosome assembly factor mrt4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D1N9_SAPPC)

HSP 1 Score: 196 bits (498), Expect = 1.520e-59
Identity = 107/231 (46.32%), Postives = 155/231 (67.10%), Query Frame = 1
Query:    1 MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRTSHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHVGLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSMLEQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLH-DKKLAVFRLRLVCFYSK-GQYEAL------AGADDDSD 669
            MPKS+R +   +T+   KG   K+G++  IR  VD +  +YVFSF N+RT+H K VRA+F DSRFFLGKNKVM++ALGRS  +E+AENL + S  + G VGLL+T++   +V +YFA L+V D+A +GF+   T  +P G L     SM+E LRALG+  +++  +ITL +   +C+ G+ LTPEQAK L+H DKK+A F ++++  +SK GQY  +      A A+DD +
Sbjct:    1 MPKSRRVRTKPLTQTSKKGADLKKGVVDSIRSAVDDYSAIYVFSFENMRTNHFKVVRADFADSRFFLGKNKVMKVALGRSPEEEYAENLFKLSNDISGSVGLLMTNKGDDEVREYFAKLSVEDYAKSGFVATETVTIPAGPLPQFVGSMVESLRALGLPVDLKRSVITLNNAHTICKEGQTLTPEQAKLLVHFDKKMATFNVQMLSRWSKDGQYTRISERKTKASANDDDE 231          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7427.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI6.680e-6952.23RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
A0A835Z2W2_9STRA2.490e-6752.04Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
M4C3P0_HYAAE1.740e-6551.13Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonos... [more]
H3GA64_PHYRM1.850e-6248.18Ribosome assembly factor mrt4 n=24 Tax=Phytophthor... [more]
K3WRY3_GLOUD2.460e-6246.75Ribosome assembly factor mrt4 n=1 Tax=Globisporang... [more]
A0A3F2RLT2_9STRA2.970e-6246.22Ribosome assembly factor mrt4 n=1 Tax=Phytophthora... [more]
A0A485KK68_9STRA3.730e-6148.17Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces ... [more]
A0A3M6VK82_9STRA6.030e-6147.27Ribosome assembly factor mrt4 n=1 Tax=Peronospora ... [more]
A0A1W0A1Q6_9STRA3.770e-6045.87Ribosome assembly factor mrt4 n=1 Tax=Thraustothec... [more]
A0A067D1N9_SAPPC1.520e-5946.32Ribosome assembly factor mrt4 n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7427contigP-wetherbeei_contig7427:409..1663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6X6
Preferred nameMRTO4
PFAMsRibosomal_L10
Model size672
Max annot lvl2759|Eukaryota
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons3
Evalue1.1e-69
EggNOG OGsCOG0244@1|root,KOG0816@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-01_011870.1
Descriptionribosomal large subunit assembly
Cds size672
COG categoryJ
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.6705549-CDS-P-wetherbeei_contig7427:408..5101683186980.6705549-CDS-P-wetherbeei_contig7427:408..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7427 409..510 -
1683186980.6825426-CDS-P-wetherbeei_contig7427:852..12091683186980.6825426-CDS-P-wetherbeei_contig7427:852..1209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7427 853..1209 -
1683186980.6927001-CDS-P-wetherbeei_contig7427:1450..16631683186980.6927001-CDS-P-wetherbeei_contig7427:1450..1663Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7427 1451..1663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7427.2.1prot_P-wetherbeei_contig7427.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7427 409..1663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7427.2.1

>prot_P-wetherbeei_contig7427.2.1 ID=prot_P-wetherbeei_contig7427.2.1|Name=mRNA_P-wetherbeei_contig7427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MPKSKRNKEVHMTKAKAKGRTRKQGLIQEIREGVDKHECLYVFSFHNLRT
SHMKDVRAEFRDSRFFLGKNKVMQLALGRSHADEHAENLSRASRHLRGHV
GLLLTDRPRADVEKYFAALAVPDFASAGFIPAATEVLPRGILEGRPVSML
EQLRALGMVAEIEDGLITLRSPFCMCRAGEALTPEQAKALLHDKKLAVFR
LRLVCFYSKGQYEALAGADDDSDG
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mRNA from alignment at P-wetherbeei_contig7427:409..1663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7427.2.1 ID=mRNA_P-wetherbeei_contig7427.2.1|Name=mRNA_P-wetherbeei_contig7427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1255bp|location=Sequence derived from alignment at P-wetherbeei_contig7427:409..1663- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAAGAGCAAGAGAAACAAGGAAGTGCACATGACAAAGGCGAAAGC CAAGGGACGTACCAGAAAACAGGGGCTCATCCAGGAGATTCGCGAGGGGG TGGACAAGCACGAGTGCCTCTATGTGTTTAGCTTCCACAACTTGAGAACA TCACATATGAAGGATGTCAGAGCAGAATTTCGTGATAGTCGCTTTTTCCT TGGCAAGAACAAGGTGAGAGCCAAAATCATCGGTTCGGGTTGCCTTTTCG ATGGCCACCAAGTCGTCTGACTCTCTTTCCAAAGGACGCCTACGGTACCG ACTATTTTCTCTTTTAGCTCCGTCTCTGCTGCAGCCGCTTCTCTAAGCTT TCTGCTGGAAGTCTTCCAGCCGAATGCAACAAAGACCTGACCTTATCCCT ATCTTTCCCTCCACCGCCCTTCCTCACTCTCCGCGAAACTCCTTCGTTCC GCAGGTGATGCAGCTGGCGCTGGGGCGGAGCCACGCCGACGAGCACGCCG AAAACCTCAGCCGCGCCAGCCGCCATCTCCGCGGCCATGTCGGCCTCCTC CTCACTGACCGCCCCCGAGCCGACGTTGAAAAGTATTTCGCCGCGCTCGC CGTCCCGGACTTCGCGAGCGCCGGCTTCATCCCGGCCGCGACGGAAGTTC TGCCGCGCGGGATCCTAGAAGGGCGGCCGGTGTCGATGCTGGAGCAGTTG CGGGCGCTGGGCATGGTGGCGGAGATCGAGGACGGCCTGATCACGCTGCG GTCACCGTTTTGCATGTGCCGCGCGGGGGAGGCGCTGACGCCGGAGCAGG CCAAGGCGCTGGTGAGTGGCTCACGCGTGGCATCCGTCTGTGCGTTCTCT GCAATCGCTTCGTTGAGGTCTGGCTTGGTTTTATCGCATGGCTGCTTCGG CGATCGGCGTGAATTTCGACGCTTCGAGTTTGAGCTGTACCGTATGATGC GATGCCCTGAAGTTTGCCGTGCAATTGAGATATTTGTAAAGCTTACTTGC TTTAAGCTGCCGATATCTACTCGGCCAAATATCTCAGCCCGGGTGACGCA GGAGACTGCCCTGGCACGTGCCGCTCATCGGTCAAGTCTATCCTCCATCT GACCTCTACTAGGCGACCATTACCGATGTTCCAAATGAATGAACTTACAG GAGCTCCATGACAAGAAGCTGGCGGTCTTTCGCCTCCGCCTCGTCTGCTT CTACAGCAAGGGCCAATACGAAGCGTTGGCCGGCGCCGACGATGACAGCG ATGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7427:409..1663-

>mRNA_P-wetherbeei_contig7427.2.1 ID=mRNA_P-wetherbeei_contig7427.2.1|Name=mRNA_P-wetherbeei_contig7427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig7427:409..1663- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAAGAGCAAGAGAAACAAGGAAGTGCACATGACAAAGGCGAAAGC
CAAGGGACGTACCAGAAAACAGGGGCTCATCCAGGAGATTCGCGAGGGGG
TGGACAAGCACGAGTGCCTCTATGTGTTTAGCTTCCACAACTTGAGAACA
TCACATATGAAGGATGTCAGAGCAGAATTTCGTGATAGTCGCTTTTTCCT
TGGCAAGAACAAGGTGATGCAGCTGGCGCTGGGGCGGAGCCACGCCGACG
AGCACGCCGAAAACCTCAGCCGCGCCAGCCGCCATCTCCGCGGCCATGTC
GGCCTCCTCCTCACTGACCGCCCCCGAGCCGACGTTGAAAAGTATTTCGC
CGCGCTCGCCGTCCCGGACTTCGCGAGCGCCGGCTTCATCCCGGCCGCGA
CGGAAGTTCTGCCGCGCGGGATCCTAGAAGGGCGGCCGGTGTCGATGCTG
GAGCAGTTGCGGGCGCTGGGCATGGTGGCGGAGATCGAGGACGGCCTGAT
CACGCTGCGGTCACCGTTTTGCATGTGCCGCGCGGGGGAGGCGCTGACGC
CGGAGCAGGCCAAGGCGCTGCTCCATGACAAGAAGCTGGCGGTCTTTCGC
CTCCGCCTCGTCTGCTTCTACAGCAAGGGCCAATACGAAGCGTTGGCCGG
CGCCGACGATGACAGCGATGGC
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