mRNA_P-wetherbeei_contig7404.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7404.3.1
Unique NamemRNA_P-wetherbeei_contig7404.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: W5YCH9_KOMXY (Uncharacterized protein n=1 Tax=Komagataeibacter xylinus E25 TaxID=1296990 RepID=W5YCH9_KOMXY)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-16
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 WPVPRSLATTSGVSVDVLSSGYLDVSVPRVCFHTL*IHVRIWPKPGVSPFGNLRIKACSQLPEA 192
            WPVPRSLATTS +S+DV SSGYLDVSVPRV   +L I   I     V+PF   RIKACS+LP A
Sbjct:   46 WPVPRSLATTSRISIDVFSSGYLDVSVPRVRLMSLCIQDMIPIAGWVAPFRYPRIKACSRLPMA 109          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: E0XUL8_9BACT (Uncharacterized protein n=1 Tax=uncultured Acidobacteriales bacterium HF0200_23L05 TaxID=710732 RepID=E0XUL8_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.160e-14
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 GLFRVRSPLLAESLLMSFPPGT*MFQFPGFASTHYEFM*G-SGRS-QGFPHSEIFGSKLVRSSP 187
            GLFRVRSPLLAESLL SFP GT M  FP  +ST Y F  G SG +  GFPHS+I GS  V +SP
Sbjct:    7 GLFRVRSPLLAESLLFSFPTGTEMVHFPALSSTAYVFSRGYSGITPSGFPHSDIVGSTFVCNSP 70          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: A0A060PEK9_BACNB (Uncharacterized protein n=1 Tax=Bacillus subtilis subsp. natto (strain BEST195) TaxID=645657 RepID=A0A060PEK9_BACNB)

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-14
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 WPVPRSLATTSGVSVDVLSSGYLDVSVPRVCFHTL*IHVRIWP----KPGVSPFGNLRIKACSQLPEA 192
            W  P SLA T G++    SSGYLDVSVPRVC   +    R+W     +  VSPFGNLRIKAC QLPEA
Sbjct:   54 WANPVSLAATQGIAFAFSSSGYLDVSVPRVCL-LISYEFRLWIPLHYERWVSPFGNLRIKACLQLPEA 120          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: E0XW66_9BACT (Uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium HF4000_26D02 TaxID=710731 RepID=E0XW66_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.060e-13
Identity = 43/65 (66.15%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 GLFRVRSPLLAESLLMSFPPGT*MFQFPGFASTHYEFM*GSGR-SQG-FPHSEIFGSKLVRSSPK 190
            GL RVRSPLLAESLL SFP GT M  FP  +S+ Y F  G  R SQG FPHSEI GSK V  SPK
Sbjct:   71 GLVRVRSPLLAESLLFSFPAGTEMVHFPALSSSTYGFSRGYLRISQGGFPHSEISGSKPVCGSPK 135          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: B0THV2_HELMI (Uncharacterized protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) TaxID=498761 RepID=B0THV2_HELMI)

HSP 1 Score: 63.2 bits (152), Expect = 2.110e-11
Identity = 36/63 (57.14%), Postives = 38/63 (60.32%), Query Frame = 2
Query:    5 LFRVRSPLLAESLLMSFPPGT*MFQFPGFASTHYEFM*G--SGRSQGFPHSEIFGSKLVRSSP 187
            LF  RSPLL ES L+SFPPGT MFQFPG AS  Y F  G       G PHS I GS+    SP
Sbjct:   18 LFPFRSPLLRESRLISFPPGTEMFQFPGLASHAYRFSVGYLDMTPSGLPHSGIHGSRPACGSP 80          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: E6PXH1_9ZZZZ (Uncharacterized protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=E6PXH1_9ZZZZ)

HSP 1 Score: 62.8 bits (151), Expect = 6.790e-11
Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 2
Query:    2 GLFRVRSPLLAESLLMSFPPGT*MFQFPGFASTHYEFM*GSGR--SQGFPHSEIFG 163
            GLFR RSPLL+ES  +SFPPGT M  FPGFA T            S GFPHSEIFG
Sbjct:   89 GLFRFRSPLLSESRFLSFPPGTEMVHFPGFARTRLCIQRAVPEVCSGGFPHSEIFG 144          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: A0A8J2JMX3_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JMX3_9HEXA)

HSP 1 Score: 60.1 bits (144), Expect = 4.890e-10
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    7 VPRSLATTSGVSVDVLSSGYLDVSVPRVCFHTL*IHVRIWPKPGVSPFGNLRIKACSQLPEA 192
            +P SLATT G+SVDV SSGYLDVSV +V F  L I + I     V PF NLRIK     P +
Sbjct:   37 LPNSLATTIGISVDVFSSGYLDVSVLQVRFDNLCIQLPIPIARWVPPFRNLRIKVYLPTPRS 98          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: D1CZ21_9HYPH (Uncharacterized protein (Fragment) n=7 Tax=Brucella TaxID=234 RepID=D1CZ21_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 9.290e-10
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1
Query:    1 WPVPRSLATTSGVSVDVLSSGYLDVSVPRVCF 96
            WP PRSLATTSGVS DVLSSGYLDVSVP+V F
Sbjct:  104 WPGPRSLATTSGVSFDVLSSGYLDVSVPQVRF 135          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: A0A1B2YM57_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YM57_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 7.780e-9
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = -2
Query:    9 LIRRFPNGETPGFGQILT*IHSVWKQTRGTETSKYPEERTSTETPLVVASERG 167
            +IR++PNGET     I+    SV +QT+GTETSKY EE+ +   PLVVASERG
Sbjct:    1 MIRKYPNGETHYIEDIV----SVRRQTQGTETSKYLEEKKTKVIPLVVASERG 49          
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Match: L1MU73_9BACT (Uncharacterized protein n=1 Tax=Alloprevotella sp. oral taxon 473 str. F0040 TaxID=1035197 RepID=L1MU73_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.480e-8
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 2
Query:    2 GLFRVRSPLLAESLLMSFPPGT*MFQFPGFASTHYEFM*GSGRSQGFPHSEIFGSKLVRSSPK 190
            GLF VRSPLL ESLL SFP GT MFQFP  AS          +  G  HSEI GS ++ + P+
Sbjct:   18 GLFPVRSPLLGESLLFSFPRGTKMFQFPPLASRTCGIT--GLQPAGLSHSEICGSMVICTYPQ 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7404.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W5YCH9_KOMXY3.060e-1664.06Uncharacterized protein n=1 Tax=Komagataeibacter x... [more]
E0XUL8_9BACT1.160e-1464.06Uncharacterized protein n=1 Tax=uncultured Acidoba... [more]
A0A060PEK9_BACNB1.300e-1457.35Uncharacterized protein n=1 Tax=Bacillus subtilis ... [more]
E0XW66_9BACT1.060e-1366.15Uncharacterized protein n=1 Tax=uncultured Acidoba... [more]
B0THV2_HELMI2.110e-1157.14Uncharacterized protein n=1 Tax=Heliobacterium mod... [more]
E6PXH1_9ZZZZ6.790e-1160.71Uncharacterized protein n=1 Tax=mine drainage meta... [more]
A0A8J2JMX3_9HEXA4.890e-1054.84Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
D1CZ21_9HYPH9.290e-1087.50Uncharacterized protein (Fragment) n=7 Tax=Brucell... [more]
A0A1B2YM57_9BACT7.780e-956.60Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
L1MU73_9BACT1.480e-852.38Uncharacterized protein n=1 Tax=Alloprevotella sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7404contigP-wetherbeei_contig7404:1786..1977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1430440.MGMSRv2_1983
Model size192
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.33e-08
EggNOG OGs2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria,2UJNP@28211|Alphaproteobacteria
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.2967143-CDS-P-wetherbeei_contig7404:1785..18931683186979.2967143-CDS-P-wetherbeei_contig7404:1785..1893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7404 1786..1893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.3061774-UTR-P-wetherbeei_contig7404:1893..19771683186979.3061774-UTR-P-wetherbeei_contig7404:1893..1977Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7404 1894..1977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7404.3.1prot_P-wetherbeei_contig7404.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7404 1786..1893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7404.3.1

>prot_P-wetherbeei_contig7404.3.1 ID=prot_P-wetherbeei_contig7404.3.1|Name=mRNA_P-wetherbeei_contig7404.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=36bp
WPVPRSLATTSGVSVDVLSSGYLDVSVPRVCFHTL*
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mRNA from alignment at P-wetherbeei_contig7404:1786..1977+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7404.3.1 ID=mRNA_P-wetherbeei_contig7404.3.1|Name=mRNA_P-wetherbeei_contig7404.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig7404:1786..1977+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCCTGTTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCTGTTGATGT CCTTTCCTCCGGGTACTTAGATGTTTCAGTTCCCCGGGTTTGCTTCCACA CACTATGAATTCATGTGAGGATCTGGCCGAAGCCAGGGGTTTCCCCATTC GGAAATCTTCGGATCAAAGCTTGTTCGCAGCTCCCCGAAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7404:1786..1977+

>mRNA_P-wetherbeei_contig7404.3.1 ID=mRNA_P-wetherbeei_contig7404.3.1|Name=mRNA_P-wetherbeei_contig7404.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig7404:1786..1977+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCCTGTTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCTGTTGATGT
CCTTTCCTCCGGGTACTTAGATGTTTCAGTTCCCCGGGTTTGCTTCCACA
CACTATGA
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