mRNA_P-wetherbeei_contig7347.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7347.1.1
Unique NamemRNA_P-wetherbeei_contig7347.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7347contigP-wetherbeei_contig7347:323..3115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1487
Hectar predicted targeting categoryother localisation
Exons6
Cds size957
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7347.1.1prot_P-wetherbeei_contig7347.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7347 1170..3012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.4237287-UTR-P-wetherbeei_contig7347:322..4971683186975.4237287-UTR-P-wetherbeei_contig7347:322..497Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7347 323..497 +
1683186975.4327545-UTR-P-wetherbeei_contig7347:778..10031683186975.4327545-UTR-P-wetherbeei_contig7347:778..1003Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7347 779..1003 +
1683186975.4413452-UTR-P-wetherbeei_contig7347:1142..11691683186975.4413452-UTR-P-wetherbeei_contig7347:1142..1169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7347 1143..1169 +
1683186975.4894319-UTR-P-wetherbeei_contig7347:3012..31151683186975.4894319-UTR-P-wetherbeei_contig7347:3012..3115Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7347 3013..3115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.4498146-CDS-P-wetherbeei_contig7347:1169..12621683186975.4498146-CDS-P-wetherbeei_contig7347:1169..1262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7347 1170..1262 +
1683186975.459115-CDS-P-wetherbeei_contig7347:1751..19431683186975.459115-CDS-P-wetherbeei_contig7347:1751..1943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7347 1752..1943 +
1683186975.469231-CDS-P-wetherbeei_contig7347:2092..21731683186975.469231-CDS-P-wetherbeei_contig7347:2092..2173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7347 2093..2173 +
1683186975.4789994-CDS-P-wetherbeei_contig7347:2421..30121683186975.4789994-CDS-P-wetherbeei_contig7347:2421..3012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7347 2422..3012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7347.1.1

>prot_P-wetherbeei_contig7347.1.1 ID=prot_P-wetherbeei_contig7347.1.1|Name=mRNA_P-wetherbeei_contig7347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
MEHSLEEAAAVLHDSLDTACAQKRLRLAKEVWAGTAKVRQMQESAAATGR
PLRALEVALAEAHRLAAVRSRNGTNRRTLAEMHDSFHCEHGYRMMANDFD
LGPAFRDPLTDTMKYGIDWLQQIAGRAAELAAAEEQLDREVDAWIEGVGP
KPMEVVDLTSSQGDGGDALRDVAVGVTGGGGGGGDCGGGGAAAFSGGAGG
GGGGSSDDVAGSCGGGSVGGSDRGAGRGDPGCEHCGGGATSPHEGVVAAA
AAQHHGASFQQAGLPPELVQRFAGHRTDLAVAPVAAAATAGGGVGGVGGG
SGGGSGAGGDAQLPAMPA*
back to top

mRNA from alignment at P-wetherbeei_contig7347:323..3115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7347.1.1 ID=mRNA_P-wetherbeei_contig7347.1.1|Name=mRNA_P-wetherbeei_contig7347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2793bp|location=Sequence derived from alignment at P-wetherbeei_contig7347:323..3115+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCAGCACGGGCAACAGCGGTGGCGAGGGCGGCGGGGGCGGCCGGCG
CTTGGGGCGCTGGCGCGCCGCAGCTAGTCAGCGGTAGCTACGGCGACTGC
GGTGGCGGCGGCGGCGGCGAGAGTGGCCTGAGCGCGGGCGAGTGGGGCCC
GGAGGACGACCGACGTGCGCTCGAGGTGCGTCTATTATTTCGGATTCTGT
GTTGATTAAGAATCAAACAGGCGAGCGCAACGCAAAGCGTTTCCCTTTCA
GTTTCTCCAGAGCAGGTGGATCTGCCTTTAGAAAGGATGGGAATGGCGCA
GGATAACCGGCGAGCTGCACGCTGTCCATACCGGGCTGGGCTGCCCTTGC
TGTATCGCTCCCCCACCAAAAGCAAATCTCTGCCTGACCGTACACCGTTC
GTTTTTTGACGACGCTTTTGCCGTTCTCCCTTCTCTGTCTTACTCGTCTC
CGCCAGGCGGTTCTGCGGCGCGGCTACGGCGTTTGGGAGCTCGCGTCGCG
CGATGGGCCGACCCAGATTTGGCAACGCCTCCACGCCTGTGTCAGCCGTC
CCGACGCCAGCGGCGCGACGGTGGCGGCGGCTGGCGGCGCCGGCGCTGAC
GGCGCTGGCGGCGTCAGAAGCGCCAAATTGCCGGCATCGGGTGGAGAGCT
TTCGCCTGAGGCTGCGTTTCTGAAGGAACAGGTAACGTCGGCGGGGATGT
TTAATAACGGCGAGTTGTTTTTAACATCAATTCTTTCCGTCGAAAGGCCT
TTCATTTTTGATCTCTCTTCATGGCACAAATCTATCTACATTTTTGCTGT
TCCGAATGCCCTGTGGACAGGTGCGTCGATTGGAGCGCACGTTGCTGATG
GAGCATTCTCTGGAGGAGGCGGCAGCGGTGCTACACGACAGCCTCGATAC
GGCGTGCGCCCAGAAGCGGCTCCGACTCGCCAAGGAGGTGGTGAGCTAGC
GGAAAGCGGATAGAAAAGAAGTTTGTTCCCCGCAGTCTTACCCTGCTTTG
TTCTGACGCTGCACTACCGGCGTGCGGTGGCGGTTGCGGTTACGGATGCG
TTAGCTTTGACGTTGCATGCTGGAAAGATGTTTTCACCAGGCGAATAAAT
GCATGCGTTGGAGGGAAAAAAGAGGAAAAGGCAGGGGCGACGGCTGGCGG
ACCGTGTGTCTTCTGCAGCGTTTTGCAGCCCGTTCTTGCAGGTTTCAAGC
CTCCTGACGACCGTTCCCTTGCTCCCGTACTCAGCTCCTCCTGCCCACAT
CATCCATACGCCGTCTTGGTAATCCTTCCCTCCTCCCGTCTGCCGTTCTC
TGCTCCCCCTCCGTGCTCCCGCTGCCCGCACCGCCCGCCGCCCCTCCGTC
CGTCCGTCCACGGTGCAATTGGCGACCTTTCTCCTGCCGGTCTTGTCCTG
TCTTGTTCTGCCGGCCCGGAACCTGCCAGTGGGCGGGCACGGCCAAGGTC
CGGCAGATGCAGGAGTCCGCGGCGGCCACCGGCCGGCCACTGCGCGCGCT
TGAGGTGGCGCTCGCTGAGGCACACCGGCTGGCGGCCGTCCGGAGCCGGA
ATGGCACCAACCGGCGGACGCTGGCCGAGATGCATGACAGCTTCCATTGC
GAGCACGGCTACCGAATGATGGTCAGTCCAGCGCAGTCCGTTCCGGTCCG
GCCGGATAGCAAACCACTGTTGAAAACGAAGACACGCAAGTGGGCATGCG
TAGCTTTGACCTTGTAATCCTCTTCTTCTGCTGTATGCTCTTACGCCGTA
CCGGGTACTTTCCCCAACAGGCGAACGACTTCGACCTGGGGCCGGCGTTC
AGGGATCCGTTGACGGACACGATGAAATACGGGATCGACTGGTTGCAGCA
GGTGCAGCAAATTGGGTGGAAGGCGGGGGTGCTTTGGACGGCAAATTGGC
AAATCGGATGCCGACTTATCTTTTTTTCCCGTTGTCTCATTAAGAAAGTA
CTCGCCAAGTAAAAACTTGCGTAGCCTCGCGGCGAATCTCTGATGTTCTC
GAGGTTATCCCTTCGATAGCACGACCCGGAACTTGCATTGGGGTTTAGAA
TCCTCTACACTTCTCTGAATATCGCTCCTGTCCCAAGGCCTGCCCGCAGA
TAGCGGGCCGTGCGGCAGAGCTCGCTGCGGCCGAAGAGCAGCTCGACCGG
GAGGTGGACGCGTGGATCGAGGGGGTCGGACCGAAACCCATGGAAGTCGT
CGACCTCACGTCTTCACAAGGCGATGGCGGGGATGCCTTACGCGATGTTG
CTGTCGGCGTTACCGGTGGTGGAGGCGGCGGCGGCGACTGTGGCGGTGGC
GGTGCTGCAGCCTTTAGCGGCGGCGCTGGTGGCGGCGGCGGTGGCAGTAG
CGACGACGTGGCCGGCAGTTGTGGTGGCGGCAGCGTCGGCGGCAGCGACA
GAGGTGCTGGACGCGGCGACCCCGGTTGCGAGCATTGTGGCGGCGGCGCG
ACCAGCCCACATGAGGGTGTGGTCGCGGCGGCCGCTGCGCAACACCACGG
CGCATCCTTTCAACAGGCGGGGCTGCCGCCGGAATTAGTGCAAAGGTTCG
CAGGGCATCGCACGGATTTGGCAGTGGCACCGGTGGCGGCGGCAGCGACG
GCAGGAGGCGGCGTCGGCGGCGTCGGCGGCGGCAGCGGCGGCGGCAGTGG
GGCTGGTGGTGACGCACAGCTGCCGGCGATGCCGGCCTAGCCTGATGCCT
GATGCGACAGGGCAGGCGCACGGCTGGCTATAACACGCGAACTTTGGCAG
CGGCGACAATTGGCTCGAGGGCGACAATGCGTGAAAACGAAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7347:323..3115+

>mRNA_P-wetherbeei_contig7347.1.1 ID=mRNA_P-wetherbeei_contig7347.1.1|Name=mRNA_P-wetherbeei_contig7347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig7347:323..3115+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCATTCTCTGGAGGAGGCGGCAGCGGTGCTACACGACAGCCTCGA
TACGGCGTGCGCCCAGAAGCGGCTCCGACTCGCCAAGGAGGTGTGGGCGG
GCACGGCCAAGGTCCGGCAGATGCAGGAGTCCGCGGCGGCCACCGGCCGG
CCACTGCGCGCGCTTGAGGTGGCGCTCGCTGAGGCACACCGGCTGGCGGC
CGTCCGGAGCCGGAATGGCACCAACCGGCGGACGCTGGCCGAGATGCATG
ACAGCTTCCATTGCGAGCACGGCTACCGAATGATGGCGAACGACTTCGAC
CTGGGGCCGGCGTTCAGGGATCCGTTGACGGACACGATGAAATACGGGAT
CGACTGGTTGCAGCAGATAGCGGGCCGTGCGGCAGAGCTCGCTGCGGCCG
AAGAGCAGCTCGACCGGGAGGTGGACGCGTGGATCGAGGGGGTCGGACCG
AAACCCATGGAAGTCGTCGACCTCACGTCTTCACAAGGCGATGGCGGGGA
TGCCTTACGCGATGTTGCTGTCGGCGTTACCGGTGGTGGAGGCGGCGGCG
GCGACTGTGGCGGTGGCGGTGCTGCAGCCTTTAGCGGCGGCGCTGGTGGC
GGCGGCGGTGGCAGTAGCGACGACGTGGCCGGCAGTTGTGGTGGCGGCAG
CGTCGGCGGCAGCGACAGAGGTGCTGGACGCGGCGACCCCGGTTGCGAGC
ATTGTGGCGGCGGCGCGACCAGCCCACATGAGGGTGTGGTCGCGGCGGCC
GCTGCGCAACACCACGGCGCATCCTTTCAACAGGCGGGGCTGCCGCCGGA
ATTAGTGCAAAGGTTCGCAGGGCATCGCACGGATTTGGCAGTGGCACCGG
TGGCGGCGGCAGCGACGGCAGGAGGCGGCGTCGGCGGCGTCGGCGGCGGC
AGCGGCGGCGGCAGTGGGGCTGGTGGTGACGCACAGCTGCCGGCGATGCC
GGCCTAG
back to top