mRNA_P-wetherbeei_contig731.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig731.1.1
Unique NamemRNA_P-wetherbeei_contig731.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A836CEF7_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.350e-21
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  461 QH-RSRPKMRWDVMDATAM-AYAAGEFDAIIDKGALDAMLPEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLAELSLWRLELHAVPAASKP 760
            QH R RP MRW VMD T M A     FDAIIDKGA+DA++ ED P  A AAA +LAEA R+LRP GR++ +TL Q F+ARALL  L  W L+LHA PA  +P
Sbjct:   90 QHIRRRPLMRWRVMDMTDMRALPDASFDAIIDKGAIDALMSEDTPAAAAAAARMLAEARRLLRPRGRHVVVTLAQPFIARALLRGLRGWALDLHAAPALLRP 191          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A388LGR9_CHABU (Methyltransf_25 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LGR9_CHABU)

HSP 1 Score: 90.9 bits (224), Expect = 4.250e-17
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAMAYAAGEFDAIIDKGALDAMLPEDAPQPAVAAAALLAEAGRVLRPG-GRYLCITLLQDFVARALLAELSL-WRLELHAVP 745
            R RPKMRW VMD T M +A G FD +IDKG LDA++PE +     A  ALL+E GRVL+ G GRY+C+TL Q  V   LL    L W++ +H VP
Sbjct:   99 RLRPKMRWLVMDMTKMQFADGSFDVVIDKGGLDALMPEQSDSARSAGKALLSEVGRVLKKGTGRYICVTLAQTHVLEVLLDHFKLHWKVVVHRVP 193          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: D7FQU9_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.400e-16
Identity = 53/129 (41.09%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  464 HRS----RPKMRWDVMDATAM-AYAAGEFDAIIDKGALDAMLPEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLAE-------------------------LSLWRLELHAVPAASKP 760
            HRS    RPKM W VMD T M  Y  G FDA++DKG LDA++ ED  +   +  A+L E  RVL+P GRY+C+TL QDF+  A L+                          +S W+L+LH+  A SKP
Sbjct:   97 HRSHSGVRPKMTWTVMDVTDMRGYEDGSFDAVVDKGTLDALMSEDTAEVRKSGEAMLREVKRVLKPTGRYMCVTLWQDFIGSAFLSSFAPAAVLPAAGXXXXXXXXXXXXXGMSSWKLDLHSAAATSKP 225          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A1D1Y6U2_9ARAE (Methyltransferase-like protein 13 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y6U2_9ARAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.470e-13
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAMAYAAGEFDAIIDKGALDAMLPEDAPQPAVAA---AALLAEAGRVLRPGGRYLCITLLQDFVARALLAELSL-WRLELHAVP 745
            R+RP+MRW VMD T M +A G FDAIIDKG LDA++     +P + A   +  L E  RVL+ GG+Y+C+TL +  V   L +E  L W++ +H +P
Sbjct:  102 RARPEMRWRVMDMTEMQFADGSFDAIIDKGGLDALM-----EPKLGAKLGSKFLKEVKRVLKLGGKYICLTLAESHVLGLLFSEFRLGWKMSIHVIP 193          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A2K1K655_PHYPA (Methyltransf_11 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K655_PHYPA)

HSP 1 Score: 78.2 bits (191), Expect = 8.600e-13
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAMAYAAGEFDAIIDKGALDAMLPEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALL 703
            R+RP MRW VMD T M +A   FD ++DKG+LDA+  E   +P VAA  LL+E  RVL+ GG+Y+CITL Q  V   LL
Sbjct:  114 RARPLMRWQVMDITKMQFADNSFDVVLDKGSLDALTGEP-DEPQVAAEGLLSEVKRVLKHGGKYICITLAQQHVIELLL 191          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: W2PRN7_PHYPN (Methyltransf_11 domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2PRN7_PHYPN)

HSP 1 Score: 77.8 bits (190), Expect = 1.150e-12
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAM-AYAAGEFDAIIDKGALDAMLPEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLAELSL 718
            R  P ++W VMD T M A     FD ++DKGALDA++ ED P+    A+ +L E  RVL PGGRYLC+T+ QDF+ + LL+  SL
Sbjct:  108 RKYPALQWQVMDMTDMRALEDASFDLVMDKGALDALMAEDTPEIKQDASKMLREVRRVLAPGGRYLCVTMAQDFILQHLLSFFSL 192          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A5A8ED43_CAFRO (Methyltransf_11 domain-containing protein n=9 Tax=Sar TaxID=2698737 RepID=A0A5A8ED43_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 7.440e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  473 RPKMRWDVMDATAMAYAAGEFDAIIDKGALDAMLPEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLA 706
            RP+M+W+V DA A    AG   +++DKG LDA+LPE     A  AAALL+E GRVL  GG Y+C++LLQ  V + L A
Sbjct:  102 RPEMKWEVGDARATGLDAGSVGSVVDKGTLDAVLPEPLADAAADAAALLSEGGRVLEAGGVYVCVSLLQSQVLQCLAA 179          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A2Z6MKP4_TRISU (Methyltransf_11 domain-containing protein n=4 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MKP4_TRISU)

HSP 1 Score: 74.3 bits (181), Expect = 1.720e-11
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAMAYAAGEFDAIIDKGALDAML-PEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLAELSL-WRLELHAVP--AASKP 760
            RSRP MRW VMD T+M +    FDA++DKG LDA++ PE  P         L E  RVL+PGG+++C+TL +  V   L ++  L W++ ++A+P  ++SKP
Sbjct:  107 RSRPLMRWRVMDMTSMQFEDEAFDAVVDKGGLDALMEPELGPD---LGNQYLLEVKRVLKPGGKFVCLTLAESHVLDILFSKFRLGWKMSVNAIPLNSSSKP 205          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: W1PUP2_AMBTC (Methyltransf_11 domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1PUP2_AMBTC)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-11
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAMAYAAGEFDAIIDKGALDAML-PEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLAELSL-WRLELHAV 742
            RSRP MRW VMD T M +A G FD ++DKG LDA++ P+  P+     +  L+E  RVL+ GG+Y+C+TL +  V   LL++    W + L A+
Sbjct:  100 RSRPNMRWRVMDMTQMQFADGSFDVVLDKGGLDALMEPQLGPK---LGSQYLSEVKRVLKVGGKYICLTLAESHVIELLLSKFRFGWHISLEAI 190          
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Match: A0A200Q6W4_9MAGN (Methyltransferase type 11 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q6W4_9MAGN)

HSP 1 Score: 74.3 bits (181), Expect = 1.740e-11
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  467 RSRPKMRWDVMDATAMAYAAGEFDAIIDKGALDAML-PEDAPQPAVAAAALLAEAGRVLRPGGRYLCITLLQDFVARALLAELSL-WRLELHAVP 745
            RSRP M+W VMD T M +  G FDA++DKG LDA++ PE   +     +  LAE  RVL+ GG+++C+TL +  V   L ++    W++ LHA+P
Sbjct:  116 RSRPDMKWRVMDMTHMQFTDGTFDAVLDKGGLDALMEPEYGTK---LGSQYLAEVKRVLKSGGKFVCLTLAESHVLGLLFSKFRFGWKMNLHAIP 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEF7_9STRA3.350e-2158.82Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A388LGR9_CHABU4.250e-1752.63Methyltransf_25 domain-containing protein n=1 Tax=... [more]
D7FQU9_ECTSI6.400e-1641.09Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A1D1Y6U2_9ARAE3.470e-1345.36Methyltransferase-like protein 13 n=1 Tax=Anthuriu... [more]
A0A2K1K655_PHYPA8.600e-1353.16Methyltransf_11 domain-containing protein n=2 Tax=... [more]
W2PRN7_PHYPN1.150e-1249.41Methyltransf_11 domain-containing protein n=14 Tax... [more]
A0A5A8ED43_CAFRO7.440e-1251.28Methyltransf_11 domain-containing protein n=9 Tax=... [more]
A0A2Z6MKP4_TRISU1.720e-1143.14Methyltransf_11 domain-containing protein n=4 Tax=... [more]
W1PUP2_AMBTC1.730e-1143.62Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A200Q6W4_9MAGN1.740e-1143.16Methyltransferase type 11 n=1 Tax=Macleaya cordata... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig731contigP-wetherbeei_contig731:956..2086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size761
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.693477-UTR-P-wetherbeei_contig731:955..12511683186971.693477-UTR-P-wetherbeei_contig731:955..1251Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig731 956..1251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.714868-CDS-P-wetherbeei_contig731:1251..16341683186971.714868-CDS-P-wetherbeei_contig731:1251..1634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig731 1252..1634 +
1683186971.7387292-CDS-P-wetherbeei_contig731:2004..20861683186971.7387292-CDS-P-wetherbeei_contig731:2004..2086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig731 2005..2086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig731.1.1prot_P-wetherbeei_contig731.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig731 1252..2086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig731.1.1

>prot_P-wetherbeei_contig731.1.1 ID=prot_P-wetherbeei_contig731.1.1|Name=mRNA_P-wetherbeei_contig731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MAGFQCTEHLLVKCYRDHAVEHPFPCPQLSHSVFATCDWTLLPSPPLNLL
CSLSSSTGRGQRCGGMLWMPLPWRTPPASLMLSSIRAPLMQCCQRTRRNP
PSRPPLCWRRPAACCGPAAATSASRCCRTLWPVRCSPNCRCGGLSSTPCP
PPPSR
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mRNA from alignment at P-wetherbeei_contig731:956..2086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig731.1.1 ID=mRNA_P-wetherbeei_contig731.1.1|Name=mRNA_P-wetherbeei_contig731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-wetherbeei_contig731:956..2086+ (Phaeothamnion wetherbeei SAG_119_79)
ACGTCTCGCTCCAATTACACGACGAGGGCTACGACGTGACGTCGATGGAT TTTAGCGAGCGCGTCATCCACCAAATGATGGCGAAGGTTCGTGTTGGGTG TATGTGGTTCTTTTCTGTTTTTTGTATATATTTGGCATCTGCTGTTTTCT TCAGTGCCTCCTCTATAGATCGTACTTGGTACAGCTGTTGGATGTCTTCT TATAGCAAGAATTCAATTTTGCATGCCTTCGAAATTTTCCTTTGAATAGT GTTGCAAGCAACGTTTCCTTGGAACTGAGTGGTGCATGGAACGCTGATGG CCGGTTTCCAGTGCACAGAACATCTGCTAGTAAAGTGTTACCGAGATCAT GCCGTCGAGCATCCCTTTCCCTGTCCTCAACTTTCCCATTCTGTTTTCGC CACTTGCGACTGGACTCTCCTTCCATCACCGCCTCTCAATCTCCTTTGCT CTCTTTCTTCCAGCACCGGTCGCGGCCAAAGATGCGGTGGGATGTTATGG ATGCCACTGCCATGGCGTACGCCGCCGGCGAGTTTGATGCTATCATCGAT AAGGGCGCCCTTGATGCAATGCTGCCAGAGGACGCGCCGCAACCCGCCGT CGCGGCCGCCGCTTTGCTGGCGGAGGCCGGCCGCGTGCTGCGGCCCGGCG GCCGCTACCTCTGCATCACGCTGCTGCAGGTGCGTTTTTGCTCCCCTTTT CTCCGCGCCTTTTTGCTGCTTAGTTTGTCTTTCCTCTCCTTGGCTAGAGC GTTCATGGCGGGCCGAGTCTGTCAAAGGAAGAGGATGGTATTGGTTTCAA CGCCGCTAGTAAAGCTCTAGATGATATTGGGGAAGATATTTAGAGCAACC GCCCGGACTGCTCGCTATCTAGTTGCTGGGCCATGGCGTTCGCTCATGGA CAATTTTCAATCGAGCCAATGGATCAAGCTCCAACCTCTTACCTTCTCCA CGAGGCCGACCCTCTTTCCTCGCTCGAGAATCGATTTACTGTCTTCGCGT GTTTGTTTTTCCTCTTCCTCTGTGCCTCCACCGTCTGCCCGTTCTGCAGG ACTTTGTGGCCCGTGCGCTGCTCGCCGAACTGTCGTTGTGGCGGCTTGAG CTCCACGCCGTGCCCGCCGCCTCCAAGCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig731:956..2086+

>mRNA_P-wetherbeei_contig731.1.1 ID=mRNA_P-wetherbeei_contig731.1.1|Name=mRNA_P-wetherbeei_contig731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig731:956..2086+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGTTTCCAGTGCACAGAACATCTGCTAGTAAAGTGTTACCGAGA
TCATGCCGTCGAGCATCCCTTTCCCTGTCCTCAACTTTCCCATTCTGTTT
TCGCCACTTGCGACTGGACTCTCCTTCCATCACCGCCTCTCAATCTCCTT
TGCTCTCTTTCTTCCAGCACCGGTCGCGGCCAAAGATGCGGTGGGATGTT
ATGGATGCCACTGCCATGGCGTACGCCGCCGGCGAGTTTGATGCTATCAT
CGATAAGGGCGCCCTTGATGCAATGCTGCCAGAGGACGCGCCGCAACCCG
CCGTCGCGGCCGCCGCTTTGCTGGCGGAGGCCGGCCGCGTGCTGCGGCCC
GGCGGCCGCTACCTCTGCATCACGCTGCTGCAGGACTTTGTGGCCCGTGC
GCTGCTCGCCGAACTGTCGTTGTGGCGGCTTGAGCTCCACGCCGTGCCCG
CCGCCTCCAAGCCGT
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