mRNA_P-wetherbeei_contig7204.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7204.1.1
Unique NamemRNA_P-wetherbeei_contig7204.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7204contigP-wetherbeei_contig7204:1272..2090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size819
Hectar predicted targeting categoryother localisation
Exons1
Cds size747
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.5601344-UTR-P-wetherbeei_contig7204:1271..13021683186965.5601344-UTR-P-wetherbeei_contig7204:1271..1302Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7204 1272..1302 -
1683186965.5919282-UTR-P-wetherbeei_contig7204:2049..20901683186965.5919282-UTR-P-wetherbeei_contig7204:2049..2090Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7204 2050..2090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.5712826-CDS-P-wetherbeei_contig7204:1302..20491683186965.5712826-CDS-P-wetherbeei_contig7204:1302..2049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7204 1303..2049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7204.1.1prot_P-wetherbeei_contig7204.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7204 1303..2049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7204.1.1

>prot_P-wetherbeei_contig7204.1.1 ID=prot_P-wetherbeei_contig7204.1.1|Name=mRNA_P-wetherbeei_contig7204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=249bp
MSGKTRSSKKREAAVAVATPPRAVEHSDSDEAPEEISFTKGEEEALAVIA
AETAARGLTAKKKRQRKSRDRKTTEATGEATDGGATAAAKEGEGGADATD
EVKGASAPQSSLSSSRAVALPDEVLKAVKAAKEEAAVATAVAQAAAAAAA
AAAAGKDARTRVAQRKRKRKTFGNIELVVLSEESLGDPMARPPAAGPAAA
VAKFKARDFLGLQLAKKPRIPLMKMRSEKRKGPAWSFAKDRAGEKKGK*
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mRNA from alignment at P-wetherbeei_contig7204:1272..2090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7204.1.1 ID=mRNA_P-wetherbeei_contig7204.1.1|Name=mRNA_P-wetherbeei_contig7204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig7204:1272..2090- (Phaeothamnion wetherbeei SAG_119_79)
GGTGATTGGGGGAAGGGAAAAAAGTAGCAGAACCAACCATCATGTCGGGC
AAGACGCGATCCTCCAAAAAGCGCGAGGCCGCGGTGGCTGTCGCAACACC
ACCGCGAGCGGTTGAGCATTCAGACTCGGACGAGGCGCCGGAGGAAATCT
CGTTTACCAAAGGAGAGGAGGAGGCCCTCGCCGTGATTGCAGCCGAGACA
GCCGCACGAGGACTTACAGCCAAGAAGAAGCGGCAACGGAAAAGTCGCGA
TCGCAAGACGACTGAAGCAACAGGGGAGGCGACGGATGGAGGAGCGACAG
CAGCAGCGAAGGAAGGCGAGGGCGGCGCCGACGCCACGGACGAGGTAAAG
GGCGCGAGCGCGCCACAATCATCGTTATCGTCGTCCCGAGCGGTGGCACT
CCCCGACGAGGTTTTGAAAGCCGTGAAGGCGGCAAAGGAAGAGGCGGCTG
TAGCTACTGCAGTCGCTCAGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCT
GCAGGGAAGGACGCCAGAACGCGGGTCGCGCAGCGGAAGCGGAAGCGCAA
GACCTTTGGCAACATCGAGCTGGTGGTACTTAGCGAAGAAAGCCTTGGCG
ATCCGATGGCCCGACCGCCGGCGGCGGGGCCGGCGGCAGCAGTCGCCAAG
TTCAAGGCGCGGGATTTTTTAGGGCTGCAGCTGGCGAAAAAGCCGCGGAT
CCCGCTCATGAAGATGCGGTCGGAGAAGCGAAAGGGACCGGCGTGGTCCT
TTGCGAAAGACAGAGCAGGAGAGAAAAAAGGCAAATGAGATAAAAATGGG
AACCCTTTTAGTCATCCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7204:1272..2090-

>mRNA_P-wetherbeei_contig7204.1.1 ID=mRNA_P-wetherbeei_contig7204.1.1|Name=mRNA_P-wetherbeei_contig7204.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig7204:1272..2090- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGGCAAGACGCGATCCTCCAAAAAGCGCGAGGCCGCGGTGGCTGT
CGCAACACCACCGCGAGCGGTTGAGCATTCAGACTCGGACGAGGCGCCGG
AGGAAATCTCGTTTACCAAAGGAGAGGAGGAGGCCCTCGCCGTGATTGCA
GCCGAGACAGCCGCACGAGGACTTACAGCCAAGAAGAAGCGGCAACGGAA
AAGTCGCGATCGCAAGACGACTGAAGCAACAGGGGAGGCGACGGATGGAG
GAGCGACAGCAGCAGCGAAGGAAGGCGAGGGCGGCGCCGACGCCACGGAC
GAGGTAAAGGGCGCGAGCGCGCCACAATCATCGTTATCGTCGTCCCGAGC
GGTGGCACTCCCCGACGAGGTTTTGAAAGCCGTGAAGGCGGCAAAGGAAG
AGGCGGCTGTAGCTACTGCAGTCGCTCAGGCGGCGGCGGCGGCGGCGGCA
GCAGCAGCTGCAGGGAAGGACGCCAGAACGCGGGTCGCGCAGCGGAAGCG
GAAGCGCAAGACCTTTGGCAACATCGAGCTGGTGGTACTTAGCGAAGAAA
GCCTTGGCGATCCGATGGCCCGACCGCCGGCGGCGGGGCCGGCGGCAGCA
GTCGCCAAGTTCAAGGCGCGGGATTTTTTAGGGCTGCAGCTGGCGAAAAA
GCCGCGGATCCCGCTCATGAAGATGCGGTCGGAGAAGCGAAAGGGACCGG
CGTGGTCCTTTGCGAAAGACAGAGCAGGAGAGAAAAAAGGCAAATGA
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