mRNA_P-wetherbeei_contig1022.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1022.3.1
Unique NamemRNA_P-wetherbeei_contig1022.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A2V7YRA1_9BACT (Very short patch repair endonuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7YRA1_9BACT)

HSP 1 Score: 139 bits (350), Expect = 2.180e-39
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   19 PSFIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLVFDVIQEQR 453
            P++  LR AS   +  AR SS K +TRCE+ L++ L   G RYR N   LPGRPD+VF   ++AVF DGDFWHGR    R  KL++G+N  YWV KI+RN+ERDRQ TR  + +GW VLR WE +V ++P    + V + ++E++
Sbjct:    3 PTYKGLRPASPHATAAARGSSKKTDTRCEVTLRKTLWAAGCRYRKNVPGLPGRPDVVFPGAKVAVFVDGDFWHGRDWETRQGKLSRGNNPAYWVAKIQRNIERDRQNTRHRQEMGWTVLRFWESEVHSDPGAVVRRVRETLRERQ 147          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A6M0K429_9GAMM (Very short patch repair endonuclease n=1 Tax=Thiorhodococcus minor TaxID=57489 RepID=A0A6M0K429_9GAMM)

HSP 1 Score: 137 bits (344), Expect = 2.460e-38
Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   19 PSFIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLVFDVIQ 444
            P F  L  AS+  S V R +  K  +  E LL++ L   GLRYRL+A++LPG+PDIVF   R+AVF DGDFWHGR    R RKLA+GHN  YWV+KIR N+ERDR+ T  L+  GW+VLR+WE D+L +P    + V  + Q
Sbjct:    8 PRFDALSPASKQASAVKRKNRAK-GSGAEALLRKRLWARGLRYRLHAKELPGKPDIVFRKLRLAVFVDGDFWHGRDWDQRQRKLAQGHNPGYWVEKIRYNLERDRRNTLELESRGWRVLRLWETDILKDPDGATEAVARLAQ 148          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A7W1MS55_9BACT (Very short patch repair endonuclease n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1MS55_9BACT)

HSP 1 Score: 135 bits (339), Expect = 2.380e-37
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   19 PSFIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLAN 405
            PSF    A+S   S   R+++ + NTR EL+L++AL   G RYRL+AR + G+PDIVFV   IAVFCDGDFWHGR    R RKLA G N  YWV KI+ NV RDR+ T AL+  GW+V+R+WE ++ AN
Sbjct:   20 PSFKNFSASSDAASHTKRSNTAR-NTRHELILRKALTARGARYRLHARGVLGKPDIVFVGAAIAVFCDGDFWHGRNWTIRKRKLATGANSAYWVAKIQSNVLRDRRTTAALRKQGWEVVRVWETEIQAN 147          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A838QNU0_9BACT (Very short patch repair endonuclease n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A838QNU0_9BACT)

HSP 1 Score: 131 bits (329), Expect = 5.000e-36
Identity = 66/124 (53.23%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   25 FIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDV 396
            F  LR +S   +  AR +S K +T  E++L+RAL   GLRYR+    LPG+PD+VF   R+ VFCDGDFWHGR LAAR+ KL +GHN  YWV KI  NV RDR+   AL   GW V+R WE D+
Sbjct:   19 FAGLRPSSTRATSAARGASRKRDTLPEIVLRRALFARGLRYRVARDGLPGKPDVVFGRARVVVFCDGDFWHGRDLAARIAKLKRGHNAPYWVAKITGNVARDRRTDAALAADGWAVMRFWETDI 142          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: UPI0019CF1A20 (Very short patch repair endonuclease n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI0019CF1A20)

HSP 1 Score: 125 bits (313), Expect = 1.470e-33
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   19 PSFIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLV 429
            PSFI L+ AS L S  A+  +   +T  E++L+R L   GLRYR   R LPG+PDIVF   R+A+FCDGDFWHGR       KL  G N  YW++KI+ N++RDR     L+  GW V+R+WE D+  +P  +A L+
Sbjct:   22 PSFIGLKPAS-LASSYAKQRNRGSDTAHEVMLRRELWHLGLRYRKTVRTLPGKPDIVFSRRRLAIFCDGDFWHGREWRKLRLKLKAGSNSSYWLKKIQSNIQRDRHNQTLLQCAGWTVIRLWESDIKRDPKKEAALI 157          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A3D1TUV7_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D1TUV7_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 5.520e-33
Identity = 69/148 (46.62%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   19 PSFIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLVFDVIQEQRRKL 462
            PSF  L  AS   S+  RA+  K +T  EL+L+R +   GLRYR +A D+PG PD+VF   R+AVFCDGDFWHGR       KL +G N  YW  KI RN ERD      L   GW+VLR+WE D+  +P   A  V   + E++R+L
Sbjct:   42 PSFKGLVPASEAASRAKRANR-KRDTAVELVLRREIWRMGLRYRKHAADVPGTPDLVFPGLRVAVFCDGDFWHGRNWDTLRPKLEQGSNAAYWPGKIARNRERDLATNAKLAAAGWRVLRLWETDIRRHPQSAATTVLRFVDERKREL 188          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A8H9WS80_9BACT (Very short patch repair endonuclease n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A8H9WS80_9BACT)

HSP 1 Score: 117 bits (294), Expect = 3.760e-31
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   91 NTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLAN 405
            +T+ E+LL++AL   GLR RL+A+DLPG+PDIVF    + VFCDGDFWHGR    R  KLA G N DYW+ KI  N ER   Q++ L+  GW VLR WE ++LA+
Sbjct:    8 HTKPEILLRKALWARGLRCRLHAKDLPGKPDIVFRRAWVVVFCDGDFWHGRDWEQRRAKLADGANPDYWINKIASNRERAVHQSQELEAAGWLVLRFWESELLAD 112          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: UPI001FACBE5A (very short patch repair endonuclease n=1 Tax=Sellimonas intestinalis TaxID=1653434 RepID=UPI001FACBE5A)

HSP 1 Score: 117 bits (294), Expect = 9.180e-31
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   94 TRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAAR----LRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDV 396
            TR E++L++AL    LRYR+N + LPG+PDIVF  +++AVFCDGDFWHG   A R    L +   G++ DYW QKI RN+ERD +  +AL+ LGW V+RIWE D+
Sbjct:   24 TRPEIILRKALWHKNLRYRVNYKKLPGKPDIVFTKQKVAVFCDGDFWHGHNWAIRGQSSLEEELDGYS-DYWRQKILRNIERDEENNKALRALGWTVVRIWESDI 127          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A373BHZ5_9FIRM (Very short patch repair endonuclease n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A373BHZ5_9FIRM)

HSP 1 Score: 116 bits (290), Expect = 2.270e-30
Identity = 60/130 (46.15%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   76 SSIKC-NTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAAR----LRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLVFDVIQEQ 450
            S+IK  +T+ ELLL++AL  +G+RYR+N + LPG+PDIV    +IA+FCDGDFWHG   A R    L +  +G++ DYW  KI +NVERD + T+ L  +GW+V+RIWE D+  N     K + + I ++
Sbjct:    2 SAIKSKDTKPELLLRKALWKYGIRYRVNYKKLPGKPDIVITKYKIAIFCDGDFWHGHNWAIRGKKSLEEELQGYS-DYWRNKIIKNVERDNKNTKLLYSMGWKVIRIWESDIEHNLDECVKTIKEAIFDE 130          
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Match: A0A173WTX8_ANAHA (Very short patch repair endonuclease n=3 Tax=Anaerostipes hadrus TaxID=649756 RepID=A0A173WTX8_ANAHA)

HSP 1 Score: 115 bits (289), Expect = 4.660e-30
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   91 NTRCELLLQRALRTHGLRYRLNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWVQKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLVFDVI 441
            +T  E+ L++AL + G RYR N ++LPGRPDIV    +I +FCD +F+HG+      +KL KG N DYW++KI RN++RD+++ + LK +GW VL  W  D+L NP    +++ + I
Sbjct:   27 DTSIEVALRKALWSKGYRYRKNYKELPGRPDIVLTKYKIVIFCDSEFFHGKDWDTLKKKLEKGKNPDYWIKKIERNIQRDKEKDQVLKFMGWTVLHFWGKDILKNPDECIRVIEETI 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1022.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V7YRA1_9BACT2.180e-3948.28Very short patch repair endonuclease n=1 Tax=Acido... [more]
A0A6M0K429_9GAMM2.460e-3851.41Very short patch repair endonuclease n=1 Tax=Thior... [more]
A0A7W1MS55_9BACT2.380e-3754.26Very short patch repair endonuclease n=1 Tax=Chtho... [more]
A0A838QNU0_9BACT5.000e-3653.23Very short patch repair endonuclease n=1 Tax=Gemma... [more]
UPI0019CF1A201.470e-3346.72Very short patch repair endonuclease n=1 Tax=Pyrin... [more]
A0A3D1TUV7_9CHLR5.520e-3346.62Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A8H9WS80_9BACT3.760e-3154.29Very short patch repair endonuclease n=2 Tax=Gemma... [more]
UPI001FACBE5A9.180e-3153.33very short patch repair endonuclease n=1 Tax=Selli... [more]
A0A373BHZ5_9FIRM2.270e-3046.15Very short patch repair endonuclease n=2 Tax=Eubac... [more]
A0A173WTX8_ANAHA4.660e-3043.59Very short patch repair endonuclease n=3 Tax=Anaer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1022contigP-wetherbeei_contig1022:1394..1861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog411469.EUBHAL_00781
Preferred namevsr
PFAMsDUF559,Vsr
Model size468
Max annot lvl186801|Clostridia
KEGG koko:K07458
Hectar predicted targeting categorymitochondrion
Exons1
Evalue7.95e-32
EggNOG OGsCOG3727@1|root,COG3727@2|Bacteria,1V3S8@1239|Firmicutes,24MYE@186801|Clostridia,25WIB@186806|Eubacteriaceae
DescriptionDNA mismatch endonuclease Vsr
Cds size468
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.7527192-CDS-P-wetherbeei_contig1022:1393..18611683185859.7527192-CDS-P-wetherbeei_contig1022:1393..1861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1022 1394..1861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1022.3.1prot_P-wetherbeei_contig1022.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1022 1394..1861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1022.3.1

>prot_P-wetherbeei_contig1022.3.1 ID=prot_P-wetherbeei_contig1022.3.1|Name=mRNA_P-wetherbeei_contig1022.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
STSGPTPSFIRLRAASRLTSKVARASSIKCNTRCELLLQRALRTHGLRYR
LNARDLPGRPDIVFVPERIAVFCDGDFWHGRRLAARLRKLAKGHNGDYWV
QKIRRNVERDRQQTRALKGLGWQVLRIWEGDVLANPTHQAKLVFDVIQEQ
RRKLL*
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mRNA from alignment at P-wetherbeei_contig1022:1394..1861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1022.3.1 ID=mRNA_P-wetherbeei_contig1022.3.1|Name=mRNA_P-wetherbeei_contig1022.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig1022:1394..1861+ (Phaeothamnion wetherbeei SAG_119_79)
TCGACTTCTGGCCCGACACCTTCTTTCATTCGTCTCAGAGCGGCTTCCCG GCTTACCTCCAAGGTCGCCCGGGCGAGCAGCATTAAGTGCAACACTCGAT GCGAACTTCTATTGCAGCGGGCTCTACGGACGCACGGCTTAAGATACCGA CTAAATGCGCGAGACCTGCCAGGCCGCCCGGATATCGTATTCGTCCCAGA GCGGATAGCCGTATTTTGTGACGGCGATTTCTGGCACGGTCGAAGGTTGG CTGCTCGCTTGCGCAAGTTGGCAAAAGGGCACAATGGCGACTACTGGGTC CAAAAGATCCGGAGGAACGTTGAGCGCGACCGCCAACAAACCCGAGCCTT GAAGGGGCTCGGCTGGCAGGTGCTTCGCATCTGGGAAGGAGACGTACTTG CGAACCCGACTCATCAAGCCAAACTTGTATTTGATGTGATCCAGGAGCAA CGACGCAAGCTCCTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1022:1394..1861+

>mRNA_P-wetherbeei_contig1022.3.1 ID=mRNA_P-wetherbeei_contig1022.3.1|Name=mRNA_P-wetherbeei_contig1022.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig1022:1394..1861+ (Phaeothamnion wetherbeei SAG_119_79)
TCGACTTCTGGCCCGACACCTTCTTTCATTCGTCTCAGAGCGGCTTCCCG
GCTTACCTCCAAGGTCGCCCGGGCGAGCAGCATTAAGTGCAACACTCGAT
GCGAACTTCTATTGCAGCGGGCTCTACGGACGCACGGCTTAAGATACCGA
CTAAATGCGCGAGACCTGCCAGGCCGCCCGGATATCGTATTCGTCCCAGA
GCGGATAGCCGTATTTTGTGACGGCGATTTCTGGCACGGTCGAAGGTTGG
CTGCTCGCTTGCGCAAGTTGGCAAAAGGGCACAATGGCGACTACTGGGTC
CAAAAGATCCGGAGGAACGTTGAGCGCGACCGCCAACAAACCCGAGCCTT
GAAGGGGCTCGGCTGGCAGGTGCTTCGCATCTGGGAAGGAGACGTACTTG
CGAACCCGACTCATCAAGCCAAACTTGTATTTGATGTGATCCAGGAGCAA
CGACGCAAGCTCCTTTGA
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