mRNA_P-wetherbeei_contig7068.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7068.3.1
Unique NamemRNA_P-wetherbeei_contig7068.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7068.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7068contigP-wetherbeei_contig7068:756..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1037
Hectar predicted targeting categoryother localisation
Exons1
Cds size867
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.7811832-UTR-P-wetherbeei_contig7068:755..8971683186955.7811832-UTR-P-wetherbeei_contig7068:755..897Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7068 756..897 +
1683186955.8140364-UTR-P-wetherbeei_contig7068:1764..17921683186955.8140364-UTR-P-wetherbeei_contig7068:1764..1792Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7068 1765..1792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.7949631-CDS-P-wetherbeei_contig7068:897..17641683186955.7949631-CDS-P-wetherbeei_contig7068:897..1764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7068 898..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7068.3.1prot_P-wetherbeei_contig7068.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7068 898..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7068.3.1

>prot_P-wetherbeei_contig7068.3.1 ID=prot_P-wetherbeei_contig7068.3.1|Name=mRNA_P-wetherbeei_contig7068.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
MKGLLQSFCEKFDNLHSTIDELLEKVDDGLVRIKRLEQGMRGNEHLTEEW
PCASSAYGNAPPVARFAVVAQSRITFRFLEFAAASGMAPGAASGHRRREC
NCKKRPPVAGADRQGERCALGCDDDGSGSAVSCVCVGSQLAALQSCPWDE
SLCSAAASDYKIYHLMYTRENRCFWDDSACRSVAANPRLAVGKRVPMECF
DLHRRRWQYQRHWEGGASGAKRRWWQRYQTDVRAACLPSARPAVSGIRQS
HIRAQNRIAGRRERCVGRRCATIRRSGREAVMRQNIGG*
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mRNA from alignment at P-wetherbeei_contig7068:756..1792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7068.3.1 ID=mRNA_P-wetherbeei_contig7068.3.1|Name=mRNA_P-wetherbeei_contig7068.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1037bp|location=Sequence derived from alignment at P-wetherbeei_contig7068:756..1792+ (Phaeothamnion wetherbeei SAG_119_79)
CCCTAAACTCCTACAGTAGGGCAACCACACACCAGCCCATAACTCCGTAG
AGGACACGCAGACCTTTCATTTCCCGAAGGGAGTGCAATCCAACATCCTT
CCTGTAGTAAAACGAAGCATCGAAGGCGAGGCTACGCTCGACATGAAAGG
TCTGTTGCAGAGCTTCTGCGAGAAGTTTGACAATCTGCACAGCACCATCG
ATGAGCTGCTCGAAAAGGTCGACGACGGGCTTGTCAGGATCAAAAGGCTG
GAGCAAGGGATGCGCGGAAACGAGCACCTCACAGAGGAATGGCCTTGCGC
GTCCTCAGCTTACGGCAACGCCCCGCCGGTGGCGCGGTTTGCCGTTGTGG
CGCAGTCCCGCATAACGTTCCGGTTCCTGGAATTCGCTGCTGCCTCGGGC
ATGGCGCCAGGGGCTGCATCAGGGCATCGACGTCGTGAATGCAATTGTAA
GAAGCGGCCACCTGTGGCTGGTGCAGATCGTCAGGGCGAGCGGTGTGCCC
TGGGATGCGACGACGACGGCAGCGGCAGCGCCGTCTCATGTGTCTGTGTC
GGTTCTCAGCTGGCTGCACTGCAAAGCTGCCCGTGGGACGAGTCTCTCTG
TTCCGCGGCTGCCAGCGACTACAAAATTTACCACCTCATGTATACACGAG
AAAATCGATGTTTTTGGGACGACAGCGCCTGCAGATCCGTCGCGGCGAAT
CCCCGACTGGCTGTGGGAAAAAGGGTGCCTATGGAATGTTTCGACCTGCA
TAGAAGGCGGTGGCAATATCAGAGGCATTGGGAGGGCGGGGCTTCAGGGG
CGAAGCGCCGCTGGTGGCAGCGATATCAAACTGACGTCCGAGCCGCTTGC
CTGCCCTCGGCAAGGCCGGCAGTGTCAGGAATCCGGCAGAGCCACATTCG
GGCGCAAAACCGCATAGCAGGACGCCGGGAGCGGTGTGTTGGGAGGCGGT
GCGCCACGATCCGCCGGAGTGGCCGAGAAGCAGTGATGAGGCAGAACATC
GGCGGATGAAGTGGCAGGATACACAGCAAGTAAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7068:756..1792+

>mRNA_P-wetherbeei_contig7068.3.1 ID=mRNA_P-wetherbeei_contig7068.3.1|Name=mRNA_P-wetherbeei_contig7068.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig7068:756..1792+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGGTCTGTTGCAGAGCTTCTGCGAGAAGTTTGACAATCTGCACAG
CACCATCGATGAGCTGCTCGAAAAGGTCGACGACGGGCTTGTCAGGATCA
AAAGGCTGGAGCAAGGGATGCGCGGAAACGAGCACCTCACAGAGGAATGG
CCTTGCGCGTCCTCAGCTTACGGCAACGCCCCGCCGGTGGCGCGGTTTGC
CGTTGTGGCGCAGTCCCGCATAACGTTCCGGTTCCTGGAATTCGCTGCTG
CCTCGGGCATGGCGCCAGGGGCTGCATCAGGGCATCGACGTCGTGAATGC
AATTGTAAGAAGCGGCCACCTGTGGCTGGTGCAGATCGTCAGGGCGAGCG
GTGTGCCCTGGGATGCGACGACGACGGCAGCGGCAGCGCCGTCTCATGTG
TCTGTGTCGGTTCTCAGCTGGCTGCACTGCAAAGCTGCCCGTGGGACGAG
TCTCTCTGTTCCGCGGCTGCCAGCGACTACAAAATTTACCACCTCATGTA
TACACGAGAAAATCGATGTTTTTGGGACGACAGCGCCTGCAGATCCGTCG
CGGCGAATCCCCGACTGGCTGTGGGAAAAAGGGTGCCTATGGAATGTTTC
GACCTGCATAGAAGGCGGTGGCAATATCAGAGGCATTGGGAGGGCGGGGC
TTCAGGGGCGAAGCGCCGCTGGTGGCAGCGATATCAAACTGACGTCCGAG
CCGCTTGCCTGCCCTCGGCAAGGCCGGCAGTGTCAGGAATCCGGCAGAGC
CACATTCGGGCGCAAAACCGCATAGCAGGACGCCGGGAGCGGTGTGTTGG
GAGGCGGTGCGCCACGATCCGCCGGAGTGGCCGAGAAGCAGTGATGAGGC
AGAACATCGGCGGATGA
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