mRNA_P-wetherbeei_contig6987.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6987.1.2
Unique NamemRNA_P-wetherbeei_contig6987.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A835ZJB2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJB2_9STRA)

HSP 1 Score: 407 bits (1047), Expect = 5.840e-141
Identity = 208/275 (75.64%), Postives = 234/275 (85.09%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAHDD 819
            A+T+ +LTF YD +   P L+ FNL L +GSRCLLIGQNGAGKSTLLRV+GGRHLAKPD AV +LGR+AFRDTKLNMVRSYLDMDWG+RTVSFAGYGVPLQADIAVKNMM+ +QA ++PERRD+L E+LGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLL+  RRES  RGATI+YATHIFDGLDDWP+HL YLTA G TGWQGR+EDL L R  R  G  + LL VAC WLR+EL+AQR  K +E A G   H++
Sbjct:   12 AVTIDNLTFKYD-QAPSPTLKGFNLSLPKGSRCLLIGQNGAGKSTLLRVVGGRHLAKPDNAVVVLGRHAFRDTKLNMVRSYLDMDWGMRTVSFAGYGVPLQADIAVKNMMAKMQA-ENPERRDELTELLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLQWLRRESEVRGATIIYATHIFDGLDDWPSHLTYLTANGATGWQGRIEDLQLYRTLRAEGKPA-LLNVACTWLRDELNAQRAAKHKEAASGESVHEN 283          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A4D9D643_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D643_9STRA)

HSP 1 Score: 383 bits (984), Expect = 3.630e-131
Identity = 188/275 (68.36%), Postives = 226/275 (82.18%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAHDD 819
            A+ ++DL F+Y    D PVL+  N+ L RGSRCLLIG NGAGKSTLLR+LGGRHL KPD+AVT++G +AFRDTKLN++R+Y+D DWG+RTV+FAGYGVPLQADI V  MMS LQ+ QHPERRD+L+E+LG+DPEWRM++VSDGQRRRVQL LGLVRPFDILLLDE+T SLDVVVRQDLLR  RRE+  RGAT++YATHIFDGLDDWP+HL ++T  G TGWQG+LEDL+  ++ R AGD  PLLR+A  WLR E + Q+R K REK  G    DD
Sbjct:   24 AVLIRDLNFSYG---DRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQS-QHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFDILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLEHYQELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDD 294          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A7R9ZBK7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBK7_9STRA)

HSP 1 Score: 352 bits (904), Expect = 1.530e-118
Identity = 186/274 (67.88%), Postives = 216/274 (78.83%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLRR--RESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAHD 816
            AI V +LTF+YD     PVLR+F+L L  GSRCLLIG NGAGKSTLLRVL GRHL K DE V +LG NAFRDT+LN  R+YLD DWG+RTV+FAG GVPL ADI V  MM  LQ + +PERRD+LVEMLG+D +WRMHQ+SDGQRRRVQ+L+GL+RPF +LLLDEITTSLDV VRQDLLR   RES ERGATI+YATHIFDGLDDW THLVYLT  G TGW+GR EDLD  R+ +E    + +L VA  WLR EL+  R  +R+EKA GALA++
Sbjct:   29 AIEVNNLTFSYDNAS--PVLRDFDLTLETGSRCLLIGANGAGKSTLLRVLAGRHLPK-DENVRVLGLNAFRDTRLNFHRAYLDCDWGMRTVAFAGAGVPLMADIPVHKMMDKLQRS-YPERRDELVEMLGIDLDWRMHQLSDGQRRRVQILIGLIRPFKVLLLDEITTSLDVCVRQDLLRWLVRESDERGATIIYATHIFDGLDDWATHLVYLTDEGRTGWRGRTEDLDEYRRLKEGNHPAKMLAVADKWLRAELERNRAARRKEKAQGALANE 298          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A7S2RIN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIN8_9STRA)

HSP 1 Score: 348 bits (892), Expect = 1.080e-116
Identity = 175/274 (63.87%), Postives = 208/274 (75.91%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLRR--RESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAHD 816
            +I V DLTF YD RK   +L+N NL L  GSRCLLIG NG+GKSTLLR+L GRHL+ PD  V +LG NAFRDTKLN  R+YLD DWG+RTV+FAG GVPL ADI V  MM  LQ   +PERRD+LVE+LG+D  WRMHQ+SDGQRRRVQLL+GL+RPF +LLLDEITTSLDV VRQDLL+   +E+ +R  T++YATHIFDGLDDW THL YLT  G  GWQGRL  L   +Q +E    + +L +A HWLR EL+  R+  + EKAGGALAH+
Sbjct:   53 SIEVNDLTFTYDSRKGKRILKNLNLNLETGSRCLLIGANGSGKSTLLRILAGRHLSSPDGNVKVLGLNAFRDTKLNFHRAYLDCDWGMRTVAFAGCGVPLMADIPVYKMMERLQQT-YPERRDELVELLGIDLRWRMHQLSDGQRRRVQLLIGLIRPFKVLLLDEITTSLDVCVRQDLLKWLVKETEQRQVTVIYATHIFDGLDDWATHLHYLTDEGSCGWQGRLAALPKYQQLKEENHPAKMLAIADHWLRRELENNRQRSKFEKAGGALAHE 325          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A6H5L275_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L275_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 1.670e-116
Identity = 181/284 (63.73%), Postives = 212/284 (74.65%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQ-----------------------VSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRRE 777
            A+ V  L F YDG  D PVL+ F+L L  GSRCLLIGQNGAGKSTLLR+L GRH+ KPD+AV +L ++AFRDT LN  RS+L MDWG+RT+SFAG+GVPLQADIAV +MM   Q  ++PERR++L+ MLGVDP WRMHQ                       VSDGQRRRVQLLLGLV+PF +LLLDE+TTSLDVVVRQDLL    +ES  RGATI+YATHIFDGLD+WPTHL YLT  G TGWQGRLEDL+L RQ +E G++  LL+VA HWLR E +  RRE
Sbjct:   45 AVVVTKLDFTYDGM-DKPVLKQFDLNLPTGSRCLLIGQNGAGKSTLLRLLAGRHITKPDDAVIVLDKHAFRDTTLNKHRSFLSMDWGMRTISFAGHGVPLQADIAVGDMMKKDQE-RYPERREELLNMLGVDPNWRMHQASKTHEACVILHVDTFMCCRSVCVSDGQRRRVQLLLGLVKPFKLLLLDEVTTSLDVVVRQDLLHWLHKESVGRGATIIYATHIFDGLDEWPTHLTYLTRDGSTGWQGRLEDLELNRQMKERGETCTLLKVAVHWLRGEQEEYRRE 326          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A7S3PTX2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX2_9STRA)

HSP 1 Score: 345 bits (885), Expect = 7.820e-116
Identity = 173/273 (63.37%), Postives = 209/273 (76.56%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAH 813
            AI V  LTFAYD   +  +L + +L L  GSRCLLIG NG+GKSTL+R+L GRHL K D  + +LG NAFRDTKLN  R+YLD DWGLRTV+FAG GVPL ADI V  MM  LQ + +PERRD+LVEMLG+D +WRMHQ+SDGQRRRVQLL+GL+RPF +LLLDEITTSLDV VRQDLL    +E+ ERGATI+YATHIFDGLDDWPTHL YLT +G TGWQG++++L+  +Q +     + +L VA HWLR EL+  R  ++ EKA G  AH
Sbjct:   24 AIEVDGLTFAYDSNPNAVILNDLSLALPTGSRCLLIGANGSGKSTLMRILAGRHLTKADNEIKVLGLNAFRDTKLNFHRAYLDCDWGLRTVAFAGTGVPLMADIPVHQMMEKLQKS-YPERRDELVEMLGIDLQWRMHQLSDGQRRRVQLLIGLIRPFKVLLLDEITTSLDVCVRQDLLGWLAKETEERGATIIYATHIFDGLDDWPTHLTYLTDSGNTGWQGKMDELEYYQQLKADNHPAKMLAVADHWLRKELERNRARRKFEKAQGENAH 295          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A7R9YAI1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAI1_9STRA)

HSP 1 Score: 343 bits (880), Expect = 2.210e-115
Identity = 165/260 (63.46%), Postives = 208/260 (80.00%), Query Frame = 1
Query:    4 ITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRRE 777
            + VKDL F+Y+   +H VLR  NL L +G R LLIG NGAGKSTLLRVLGGRH+  PD+A  I GR AF DT+LN +RSYLD  WG+RTV+FAGYGVP+QADIAV +MM  +Q + HPERRD+L ++LG++P WRMH +SDGQRRRVQ++LGLVRPF++LL+DE+T SLDVVVRQDLL   R+E   RG  ++YATHIFDGLDDWPTHL YLT+ G TGWQG + +LD+ R+ R AG+ SP+LR+AC WLR+EL  ++++
Sbjct:   25 VRVKDLWFSYE---NHHVLRGINLRLEKGQRMLLIGANGAGKSTLLRVLGGRHMFHPDDAALICGRQAFHDTRLNFLRSYLDTQWGMRTVAFAGYGVPMQADIAVVDMMKKMQDS-HPERRDELYQLLGINPNWRMHALSDGQRRRVQIMLGLVRPFEVLLMDEVTVSLDVVVRQDLLLWLRQECETRGCCVIYATHIFDGLDDWPTHLHYLTSEGTTGWQGPIGELDIYRELRAAGEPSPMLRIACKWLRDELAERKKQ 280          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: B8C780_THAPS (ABC transporter domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C780_THAPS)

HSP 1 Score: 341 bits (875), Expect = 3.150e-114
Identity = 170/275 (61.82%), Postives = 209/275 (76.00%), Query Frame = 1
Query:    1 AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAHDD 819
            AI++ DLTF+YD     P L N NL+L +GSRCLLIG NG+GKSTLLR++ GRHLAKP+  +T+LG N+FRDT+LN  R+YL+  WGL+TV+FAG GVPL ADI V  MM  LQ A +PERRD+L+EMLG+DP WRMH +SDGQRRRVQLL+ LVRPF ILLLDE+T SLDV VRQDLL+   +ES ERGATI+YATHIFDGLDDW THL YL   G  GWQG ++DL+L    + A     +L +A +WLR EL+  R+ +R EKA G +A+ D
Sbjct:   26 AISITDLTFSYDPSTLKPTLENLNLQLPQGSRCLLIGANGSGKSTLLRLISGRHLAKPEGCITVLGLNSFRDTRLNFHRAYLETGWGLQTVAFAGCGVPLMADIPVFKMMEKLQNA-YPERRDELIEMLGIDPNWRMHMLSDGQRRRVQLLIQLVRPFTILLLDEVTVSLDVCVRQDLLKWLEKESVERGATIIYATHIFDGLDDWATHLYYLNNNGSCGWQGEMKDLELYHTLKAANHPCKMLAIADNWLRKELEDNRKNRRLEKAQGEMAYQD 299          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: K0R089_THAOC (ABC transporter domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R089_THAOC)

HSP 1 Score: 329 bits (844), Expect = 2.260e-110
Identity = 165/263 (62.74%), Postives = 202/263 (76.81%), Query Frame = 1
Query:   31 YDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNELDAQRREKRREKAGGALAH 813
            YD +   P L   +L+L  GSRCLLIG NG+GKSTLLR++ GRHLAKP+  + +LG NA+RDT+LN  RSYL+  WGL TV+FAG GVPL ADI VK MM ++Q A  PERRD+L+E+LG+DPEWRMH +S+GQRRRVQLL+ LVRPF ILLLDE+T SLDV VRQDLLR   RES+ERGATIVYATHIFDGLDDW THL YLT+ G  GW G ++DL+  ++ +     S +L VA HWLR EL+  RR++R EKA G +A+
Sbjct:    1 YDPKVLAPTLNKLDLQLPTGSRCLLIGANGSGKSTLLRLISGRHLAKPEGCINVLGLNAYRDTRLNFHRSYLETGWGLTTVAFAGCGVPLMADIPVKEMMKSVQNA-FPERRDELMELLGIDPEWRMHMLSEGQRRRVQLLIQLVRPFQILLLDEVTVSLDVCVRQDLLRWLERESSERGATIVYATHIFDGLDDWATHLFYLTSEGNCGWSGEMKDLEYYQRLKAENHPSKMLAVADHWLRRELEENRRKRRFEKAQGEMAY 262          
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Match: A0A8J2SKG5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKG5_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.390e-109
Identity = 164/259 (63.32%), Postives = 205/259 (79.15%), Query Frame = 1
Query:    1 AITVKDLTFAYD----GRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVLGGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPLQADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQLLLGLVRPFDILLLDEITTSLDVVVRQDLLR--RRESAERGATIVYATHIFDGLDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLRNEL 759
            A+ V +L FAY     G  +H VL+NF ++L  GSRCLL+G NG+GKSTLL+VL G+HL K D  V ++G +AFRD KLN+ R++LD  WG+RTV+FAGYG PLQADI V  MM  LQ+ Q+PERRD+LV++LGV+PEWRMH+VSDGQRRRVQLLLGLVRPFDILLLDE+TT LDV+VRQDL+R  ++E+  RGAT+VYATHIFDGLDDWPTHL YL   G TGWQG + +L+L  + R+ G  SP+L++A  WLR E+
Sbjct:   43 AVEVDNLDFAYPSSLPGEDEHLVLKNFCMQLKPGSRCLLLGANGSGKSTLLKVLAGKHLTKGDR-VKVMGTDAFRDLKLNLTRAFLDTQWGMRTVAFAGYGCPLQADIRVGGMMEKLQS-QYPERRDELVKLLGVNPEWRMHRVSDGQRRRVQLLLGLVRPFDILLLDEVTTCLDVIVRQDLMRWLQKETETRGATVVYATHIFDGLDDWPTHLHYLNRHGATGWQGPMGELELYSKLRKEGHPSPMLKIATTWLRAEI 299          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6987.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJB2_9STRA5.840e-14175.64P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9D643_9STRA3.630e-13168.36ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7R9ZBK7_9STRA1.530e-11867.88Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2RIN8_9STRA1.080e-11663.87Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6H5L275_9PHAE1.670e-11663.73ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3PTX2_9STRA7.820e-11663.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9YAI1_9STRA2.210e-11563.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B8C780_THAPS3.150e-11461.82ABC transporter domain-containing protein n=1 Tax=... [more]
K0R089_THAOC2.260e-11062.74ABC transporter domain-containing protein (Fragmen... [more]
A0A8J2SKG5_9STRA1.390e-10963.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6987contigP-wetherbeei_contig6987:1..2322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps23811
PFAMsABC_tran
Model size843
Max annot lvl2836|Bacillariophyta
KEGG koko:K12608
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons7
Evalue5.16e-115
EggNOG OGsCOG4586@1|root,KOG2355@2759|Eukaryota,2XB7Z@2836|Bacillariophyta
DescriptionABC transporter
Cds size843
COG categoryQ
BRITEko00000,ko00001,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6987.1.2prot_P-wetherbeei_contig6987.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6987 1..2322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.9226148-CDS-P-wetherbeei_contig6987:0..1411683186949.9226148-CDS-P-wetherbeei_contig6987:0..141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 1..141 -
1683186949.936396-CDS-P-wetherbeei_contig6987:456..6151683186949.936396-CDS-P-wetherbeei_contig6987:456..615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 457..615 -
1683186949.952797-CDS-P-wetherbeei_contig6987:823..9041683186949.952797-CDS-P-wetherbeei_contig6987:823..904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 824..904 -
1683186949.9623253-CDS-P-wetherbeei_contig6987:1275..13891683186949.9623253-CDS-P-wetherbeei_contig6987:1275..1389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 1276..1389 -
1683186949.9781916-CDS-P-wetherbeei_contig6987:1707..18431683186949.9781916-CDS-P-wetherbeei_contig6987:1707..1843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 1708..1843 -
1683186949.9890862-CDS-P-wetherbeei_contig6987:1988..21051683186949.9890862-CDS-P-wetherbeei_contig6987:1988..2105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 1989..2105 -
1683186949.9987388-CDS-P-wetherbeei_contig6987:2227..23221683186949.9987388-CDS-P-wetherbeei_contig6987:2227..2322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6987 2228..2322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6987.1.2

>prot_P-wetherbeei_contig6987.1.2 ID=prot_P-wetherbeei_contig6987.1.2|Name=mRNA_P-wetherbeei_contig6987.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
AITVKDLTFAYDGRKDHPVLRNFNLELSRGSRCLLIGQNGAGKSTLLRVL
GGRHLAKPDEAVTILGRNAFRDTKLNMVRSYLDMDWGLRTVSFAGYGVPL
QADIAVKNMMSALQAAQHPERRDKLVEMLGVDPEWRMHQVSDGQRRRVQL
LLGLVRPFDILLLDEITTSLDVVVRQDLLRRRESAERGATIVYATHIFDG
LDDWPTHLVYLTAAGGTGWQGRLEDLDLIRQFREAGDSSPLLRVACHWLR
NELDAQRREKRREKAGGALAHDDGNELRKPY
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mRNA from alignment at P-wetherbeei_contig6987:1..2322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6987.1.2 ID=mRNA_P-wetherbeei_contig6987.1.2|Name=mRNA_P-wetherbeei_contig6987.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2322bp|location=Sequence derived from alignment at P-wetherbeei_contig6987:1..2322- (Phaeothamnion wetherbeei SAG_119_79)
GCAATCACTGTAAAAGACTTGACATTTGCATATGACGGACGCAAAGACCA CCCAGTACTGCGAAACTTCAATTTGGAGCTGTCCAGGGGAAGCAGGTGAG AGCAGGAAAGCAGGAGAAAATTGCTTTCTGACTCACGGAAGGACTTTGTC GTGCGACGTTCAAAACGCTTGCCATAAATCTCCCACCATTCAAAACTGTG GCACGTACACATTGCAGATGTCTCCTCATCGGCCAGAACGGCGCCGGCAA GAGCACTTTGCTGCGGGTGCTGGGAGGACGGCACCTTGCGAAGCCGGATG AGGCTGTGACCATCCTGGGCAGGAACGCTTTCAGGTAAAGCTCAGCCTTT GAAACTCAATTGCCCTCGGATCTTTAATGGAAGGCGGCGGTTTTCCTTCA GGTTTTTTTAAATCTTGTCATCAACCTGGGTGGATTCCTCGAGTCGTCTT AGTATTCCTTTTCTCCATGCGGCAAACAGGGATACAAAGTTGAACATGGT GCGATCATATCTGGACATGGACTGGGGCCTGCGCACCGTGTCCTTTGCGG GATACGGCGTGCCGCTCCAGGCAGACATTGCCGTCAAGAACATGATGTCT GCGCTTCAAGCAGCTGTGAGTGACCAAAGTTCGGCACATGCCTTTAAATG GATTCATTGGAGATCTGAGCAATCGAGAAAGCCGTCGAGCCGCAGTAAAG GCGGCTTCTGGGCTCCTGTGGTTGGATTCACGACTGCAGCATATCGAGCT GCCGCAAAGCATGTTGGAGTCTGTTTGCTCGTCGTTGGGCGGGCCTCCTT CTCGCTGACCACTCGAAAAACGGGCAAAAGTCCAGAGCACCTCTCCTTTA TGAAGACTTTCCTGGGTTGGAGCCACGCCGTCCTCTGAACTTTCTCTGCC GTTTGTCATGTGCCATGCCATGCTCTCCGTGAGCAGCACCCGGAGCGGCG GGATAAGCTGGTGGAGATGCTGGGCGTCGACCCCGAGTGGCGAATGCACC AGGTCTCCGACGGACAGCGGCGACGGGTGCAACTCTTGCTCGGCCTGGTG AGCCCAAATTGGTCCTGCAAACCTCCGATGTATCCGAGGAAGGGCGAGGT CGACGAATAAGTTGCAGCATTTGGCAATGAAACGGCGCTAGCGTTTGACG GGAGGAAGGAGCCAAAGACTTGATAGTGTCAGGTTGTCCTTGGGTCTGCA AGCGGGTTTTTCTGGGTCCTCGTTACTGCGGGTTGTTTGCTCTGTCTCTC CAGTTACTTAAATTTACGACAAGGCCAAAAGTTGTTGAAGTTCTCTTTTT GCGGAACTGTAGTGCAATTCCTGGATTCTTCCTTGTCTGGATTTGTAGTC TCACCGTCATTGGATCTATCTGTTCTTGTTCCCTTTGTGGCACCCCTGCC CTTATCACCGTTCCAAAGGTCCGGCCATTCGACATTTTGCTGCTGGACGA GATTACCACCTCGCTGGACGTCGTCGTCCGGCAAGACCTCCTCAGGCGCG TTTCATTTTCCGGTGCGCGTCATCGCGCCACACAAACGCGTCTTGCTGGC TTGAGTTTCCAGGCACCGGTTGCCTGTTCACGGCTCGCTGCATTTGGCAA GCGACATCGCGCTTTTTCTTCCCCTCTCCTCATCGACTTGAACGGCTGGC TGGCTGCATGCGGCGCGTCCCACCGATGGTTCCGATGGCGGCGGCAGATG GCTGGAGCGGGAGTCGGCGGAGCGCGGCGCGACAATCGTGTACGCAACGC ACATCTTCGACGGGCTGGATGACTGGCCGACGCACCTTGTCTACTTGACG GCCGCTGGCGGGACAGGCTGGCAGGGCCGCTTGGAGGACCTGGACTTGAT TCGGCAGTTCCGAGAGGTAAACAGGGTAGGGCAAGCGAGAAGAAGGGAAG GAGAACGGAAAGAGAGATGAAGTGAAAGGAGAAGGGAACGAGGATACGAG AAAGGAAAGAGGAAAAGAGAAGCGAACGTGAAGACGGTAATTGTCAGTGG ATGGAGTAGCTGCCTTTGCTCTGCTCTGGCCGCTACAAAGCGCCACTGTG GTTCGACTCGTGACCTTTCGTACTGCATCGCTATCGGTTTTTTCCTACTG CCCCTGCCGCCACCGCAACTGAAGATGCTCGCTCTTTATTTCTCACGCCT CTCCCCTCACCCAATCCATCTGTCTGCCCAGGCGGGGGACTCGTCACCGC TGCTGCGGGTGGCGTGCCATTGGCTGCGTAACGAGCTTGATGCGCAGCGC CGCGAAAAGCGCCGCGAGAAGGCGGGCGGTGCCCTCGCCCACGACGACGG CAACGAGCTGCGCAAGCCGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6987:1..2322-

>mRNA_P-wetherbeei_contig6987.1.2 ID=mRNA_P-wetherbeei_contig6987.1.2|Name=mRNA_P-wetherbeei_contig6987.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig6987:1..2322- (Phaeothamnion wetherbeei SAG_119_79)
GCAATCACTGTAAAAGACTTGACATTTGCATATGACGGACGCAAAGACCA
CCCAGTACTGCGAAACTTCAATTTGGAGCTGTCCAGGGGAAGCAGATGTC
TCCTCATCGGCCAGAACGGCGCCGGCAAGAGCACTTTGCTGCGGGTGCTG
GGAGGACGGCACCTTGCGAAGCCGGATGAGGCTGTGACCATCCTGGGCAG
GAACGCTTTCAGGGATACAAAGTTGAACATGGTGCGATCATATCTGGACA
TGGACTGGGGCCTGCGCACCGTGTCCTTTGCGGGATACGGCGTGCCGCTC
CAGGCAGACATTGCCGTCAAGAACATGATGTCTGCGCTTCAAGCAGCTCA
GCACCCGGAGCGGCGGGATAAGCTGGTGGAGATGCTGGGCGTCGACCCCG
AGTGGCGAATGCACCAGGTCTCCGACGGACAGCGGCGACGGGTGCAACTC
TTGCTCGGCCTGGTCCGGCCATTCGACATTTTGCTGCTGGACGAGATTAC
CACCTCGCTGGACGTCGTCGTCCGGCAAGACCTCCTCAGGCGCCGGGAGT
CGGCGGAGCGCGGCGCGACAATCGTGTACGCAACGCACATCTTCGACGGG
CTGGATGACTGGCCGACGCACCTTGTCTACTTGACGGCCGCTGGCGGGAC
AGGCTGGCAGGGCCGCTTGGAGGACCTGGACTTGATTCGGCAGTTCCGAG
AGGCGGGGGACTCGTCACCGCTGCTGCGGGTGGCGTGCCATTGGCTGCGT
AACGAGCTTGATGCGCAGCGCCGCGAAAAGCGCCGCGAGAAGGCGGGCGG
TGCCCTCGCCCACGACGACGGCAACGAGCTGCGCAAGCCGTAT
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