mRNA_P-wetherbeei_contig6972.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6972.2.1
Unique NamemRNA_P-wetherbeei_contig6972.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.300e-41
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERR 281
            MIIPVRCFTCGKVIGNKWETYLSLLQADY EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS+ERR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 8.710e-40
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQA 293
            MIIPVRCFTCGKVIGNKWETYL LLQ+D  EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS+ERR  Q 
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRPMQG 72
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 137 bits (344), Expect = 1.350e-39
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQ 290
            MIIPVRCFTCGKVIGNKWE+YL LL+ADY EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN++ERR +Q
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQ 71
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.420e-39
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 3 
Query:   63 VLRTTMIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 266
            +L+  MIIPVRCFTCGKVIGNKWETYLSLLQADY EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   28 LLKNKMIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.070e-38
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERR 281
            MIIPVRCFTCGKV+GNKW++YL LL+ADY EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN++ERR
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERR 68
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 133 bits (335), Expect = 5.350e-38
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQARQQ 302
            MIIPVRCFTCGKVIGNKWETYL LLQA+Y EGDA+D LGL RYCCRRM++THVDLIEKLLNYN++ER   Q R+Q
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLERNPVQQREQ 75
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 130 bits (328), Expect = 2.550e-37
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 269
            MIIPVRCFTCGKVIGNKWETYL LLQADY EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: RPBAL_ARATH (DNA-directed RNA polymerase subunit 10-like protein n=8 Tax=Streptophyta TaxID=35493 RepID=RPBAL_ARATH)

HSP 1 Score: 130 bits (328), Expect = 3.090e-37
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRD 284
            MI+PVRCFTCGKVIGNKW+TYL LLQADY EGDALD LGL RYCCRRM++THVDLIEKLLNYN+ME+ D
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.510e-37
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 269
            MIIPVRCFTCGKVI NKWETYLSLLQAD+ EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64
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BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Match: A0A7S4B650_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B650_CHRCT)

HSP 1 Score: 131 bits (330), Expect = 4.680e-37
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 3 
Query:   78 MIIPVRCFTCGKVIGNKWETYLSLLQADYGEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQA 293
            MIIPVRCFTCGKVIGNK++ YL LLQADY EGDALD LGLKRYCCRRM+LTHVDLIEKLLNYN++ER D+QA
Sbjct:   27 MIIPVRCFTCGKVIGNKYDKYLELLQADYTEGDALDALGLKRYCCRRMLLTHVDLIEKLLNYNTLERGDAQA 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6972.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE1.300e-4197.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHW2_9STRA8.710e-4088.89DNA-directed RNA polymerase I, II, and III subunit... [more]
F0YLY9_AURAN1.350e-3988.73Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1V7Q3_9STRA6.420e-3991.18Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A8J2SAT8_9STRA1.070e-3888.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2P6TBS1_CHLSO5.350e-3880.00DNA-directed RNA polymerases and III subunit RPABC... [more]
B8C402_THAPS2.550e-3792.19DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
RPBAL_ARATH3.090e-3784.06DNA-directed RNA polymerase subunit 10-like protei... [more]
A0A1E7EXD3_9STRA4.510e-3792.19DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S4B650_CHRCT4.680e-3784.72Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6972contigP-wetherbeei_contig6972:2093..2527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041410.1
Preferred namePOLR2L
PFAMsRNA_pol_N
Model size435
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02912,ko:K03007,ko:K11313,ko:K15271
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,ko04623,ko05016,ko05169,ko05202,map00230,map00240,map01100,map03010,map03020,map04623,map05016,map05169,map05202
KEGG ModuleM00177,M00179,M00180,M00181,M00182
Hectar predicted targeting categorysignal peptide
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009719,GO:0009889,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons1
Evalue1.77e-41
EggNOG OGsCOG1644@1|root,KOG3497@2759|Eukaryota
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit N/Rpb10
Ec32 orthologEc-15_003650.1
EC3.6.4.12
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size291
COG categoryK
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.1297696-UTR-P-wetherbeei_contig6972:2092..22161683186949.1297696-UTR-P-wetherbeei_contig6972:2092..2216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6972 2093..2216 -
1683186949.1641917-UTR-P-wetherbeei_contig6972:2507..25271683186949.1641917-UTR-P-wetherbeei_contig6972:2507..2527Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6972 2508..2527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186949.1436481-CDS-P-wetherbeei_contig6972:2216..25071683186949.1436481-CDS-P-wetherbeei_contig6972:2216..2507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6972 2217..2507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6972.2.1prot_P-wetherbeei_contig6972.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6972 2217..2507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6972.2.1

>prot_P-wetherbeei_contig6972.2.1 ID=prot_P-wetherbeei_contig6972.2.1|Name=mRNA_P-wetherbeei_contig6972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MGKRKRGQNFLRLLVLRTTMIIPVRCFTCGKVIGNKWETYLSLLQADYGE
GDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSMERRDSQARQQEG*
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mRNA from alignment at P-wetherbeei_contig6972:2093..2527-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6972.2.1 ID=mRNA_P-wetherbeei_contig6972.2.1|Name=mRNA_P-wetherbeei_contig6972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig6972:2093..2527- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGAAGCGCGGGGATGAAATGGGAAAAAGGAAGCGTGGACAGAACTTC
CTGCGTCTCCTCGTGCTTCGTACTACCATGATTATCCCGGTACGCTGCTT
CACGTGCGGCAAGGTGATTGGAAACAAGTGGGAGACGTATCTCAGCCTGC
TCCAGGCCGATTACGGCGAGGGCGACGCCCTAGACGAGCTCGGGCTGAAG
CGCTACTGCTGTCGGCGCATGGTTCTGACGCACGTCGACCTGATCGAGAA
GCTGTTGAACTACAATTCAATGGAGCGCAGAGATTCCCAGGCGCGGCAAC
AAGAAGGCTGACGAGAGGCGCGAGACGGCTTTGAGTAAGAGGGATGAAGA
CTGGCGAGAGACCACACCGCCCCAAAACCTGATAAATAGCACCAACATAA
TGTTTTTGATCCTGGTTCTTGGGCCCTGGTTCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6972:2093..2527-

>mRNA_P-wetherbeei_contig6972.2.1 ID=mRNA_P-wetherbeei_contig6972.2.1|Name=mRNA_P-wetherbeei_contig6972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6972:2093..2527- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAAAAAGGAAGCGTGGACAGAACTTCCTGCGTCTCCTCGTGCTTCG
TACTACCATGATTATCCCGGTACGCTGCTTCACGTGCGGCAAGGTGATTG
GAAACAAGTGGGAGACGTATCTCAGCCTGCTCCAGGCCGATTACGGCGAG
GGCGACGCCCTAGACGAGCTCGGGCTGAAGCGCTACTGCTGTCGGCGCAT
GGTTCTGACGCACGTCGACCTGATCGAGAAGCTGTTGAACTACAATTCAA
TGGAGCGCAGAGATTCCCAGGCGCGGCAACAAGAAGGCTGA
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